<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/18738?offset=290 https://bioinformaticsonline.com/opportunity/view/12111/internship-program-with-arraygen-technolgies Sun, 22 Jun 2014 23:18:31 -0500 <![CDATA[Internship program with ArrayGen Technolgies]]> Internship Program for Bioinformatics / Biotechnology Professionals Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis. Applications are accepted throughout the year. Accepted students will be listed on web with their schedules. Accepted students can attend our future workshops and trainings freely at the specified venue.

Interested candidates may email their resume along with a cover letter to careers@arraygen.com

Official website: http://www.arraygen.com/

]]> https://bioinformaticsonline.com/opportunity/view/13337/phd-opportunity-at-universite-de-liege-belgium Sat, 02 Aug 2014 01:12:43 -0500 <![CDATA[PhD opportunity at Université de Liège - Belgium]]> PhD opportunity at Université de Liège - Belgium

The Bioinformatics and Systems Biology Unit of Université de Liège (Belgium) is looking for a highly motivated master student with programming skills for a PhD thesis project (4 years, fully funded) with the goal of designing computational tools that use literature, genomic and structural data in order to infer regulatory and metabolic networks.

Applicants are invited to send their resume and a recommendation letter to Prof. Patrick Meyer (more details at www.biosys.ulg.ac.be )

For more information : www.biosys.ulg.ac.be

]]> https://bioinformaticsonline.com/researchlabs/view/14756/roderic-guigo-lab Mon, 01 Sep 2014 17:13:00 -0500 <![CDATA[Roderic Guigó Lab]]> Research in our group focuses on the investigation of the signals involved in gene specification in genomic sequences (promoter elements, splice sites, translation initiation sites, etc…). We are interested both in the mechanism of their recognition and processing, and in their evolution. In addition, but related to this basic component of our research, our group is also involved in the development of software for gene prediction and annotation in genomic sequences. Our group also actively participates in the analysis of many eukaryotic genomes and it in involved in the NIH-funded ENCODE project. Furthermore we are members of two large cancer-studies consortia (chronic lymphocytic leukemia "CLL" and Breast Cancer -Hospital del Mar/CRG/Roche-).

More at http://big.crg.cat/computational_biology_of_rna_processing

]]> https://bioinformaticsonline.com/researchlabs/view/17652/arraygen-bioinformatics-genomics-group Sun, 28 Sep 2014 14:09:55 -0500 <![CDATA[ArrayGen Bioinformatics Genomics Group]]> ArrayGen is a global bioinformatics company which is a one stop solution for microarray designing and genomics data analysis. Our novel Array Design Approach Strategy (ADAS) aims to condense the time lag between demands of scientific community and manufacture industry, thereby expediting research processes.

ArrayGen specializes in Genomics data analysis and research, as we believe in the level of precision, predictability, benchmark-ability, and data analysis capability of genomics data over other forms of biological data. ArrayGen constantly strives to develop new solutions, and plug the existing gaps in the technological advancement of the field.

More http://www.arraygen.com/

]]> https://bioinformaticsonline.com/opportunity/view/18578/research-scientist-%E2%80%93-national-institute-of-cholera-and-enteric-diseases Wed, 22 Oct 2014 10:26:46 -0500 <![CDATA[Research Scientist – National Institute of Cholera and Enteric Diseases]]> The following post is to be filled up on purely temporary basis under the project entitled "Second phase of Task Force Biomedical Informatics Center of ICMR" under Dr. Santasabuj Das, Scientist 'D' of this Institute:-

01. Scientist II 01
Essential: Ph.D. degree in Life Sciences from a recognized university along with a minimum of 2 years of research experience in Bioinformatics as evidenced by publications in the peer reviewed journals.

OR
Ph.D. degree in Bioinformatics from a recognized university.

OR
M.Sc. in Bioinformatics from a recognized university along with a minimum of 3 years of research experience in Bioinformatics as evidenced by publications in the peer reviewed journals.

Desirable:
Thorough Knowledge about In silico genome analysis and comparative genomics.
Experience with in silico identification of novel virulence factors of pathogens, host-pathogen interactions and Systems Biology.
Additional Postdoctoral research experience in relevant subjects from a recognized institutions.

Rs. 44,000/- p.m. (consolidated) plus 30% HRA

Below 40 years

Applications along with Bio-Data containing detail work experience and full list of publications may be sent via email tosantasabujdas@yahoo.com latest by October 27, 2014.

Short-listed candidates will be called via email for an interview to be held at the institute in the second week of November, 2014.

Advertisement: www.niced.org.in/placements.htm

]]> https://bioinformaticsonline.com/bookmarks/view/19636/google-genomics Thu, 18 Dec 2014 11:05:42 -0600 https://bioinformaticsonline.com/bookmarks/view/19636/google-genomics <![CDATA[Google Genomics]]>

  • Explore genetic variation interactively. Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more.

  • Process big genomic data easily. Run batch analyses like principal component analysis and Hardy-Weinberg equilibrium on as many samples as you like, in minutes or hours, with just a little code.

  • Use Google's infrastructure and big data expertise. Store one genome or a million using Google Genomics and take advantage of the same infrastructure that powers Search, Maps, YouTube, Gmail and Drive.

  • Support emerging global standards. Google Genomics is implementing the API defined by the Global Alliance for Genomics and Health for visualization, analysis and more. Compliant software can access Google Genomics, local servers, or any other implementation.

    • Address of the bookmark: https://cloud.google.com/genomics/

    ]]>     Tenzin Paul     https://bioinformaticsonline.com/bookmarks/view/42985/janggu-deep-learning-for-genomics Tue, 23 Mar 2021 05:14:43 -0500 https://bioinformaticsonline.com/bookmarks/view/42985/janggu-deep-learning-for-genomics <![CDATA[Janggu - Deep learning for Genomics]]> Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license.

    Detail tutorial at https://janggu.readthedocs.io/en/latest/

    USE cases

    https://github.com/wkopp/janggu_usecases

    Address of the bookmark: https://github.com/BIMSBbioinfo/janggu

    ]]>     Jit     https://bioinformaticsonline.com/researchlabs/view/22403/ryan-e-mills-lab Tue, 26 May 2015 09:29:24 -0500 <![CDATA[Ryan E. Mills Lab]]> Our research group is primarily focused on the analysis of whole genome sequence data to identify genetic variation (primarily structural variation) and examine their potential functional impact in disease phenotypes. We are particularly interested in analyzing complex regions of the genome that are not easily resolved through modern sequencing approaches and which may exhibit interesting mechanistic origins.

    We are also interested in the large-scale integration of genomic, expression, methylation and proteomic data sets, as well as the application of whole genome sequence analysis in clinical diagnostics.

    More at http://millslab.ccmb.med.umich.edu/index.html

    ]]>         https://bioinformaticsonline.com/news/view/22769/ensembl-27 Tue, 16 Jun 2015 16:10:36 -0500 https://bioinformaticsonline.com/news/view/22769/ensembl-27 <![CDATA[Ensembl 27]]> What is new?
    • Expansion of Protists and Fungi with hundreds of annotated genomes
    • Variation data for bread wheat, rice, Aedes aegypti, and Ixodes scapularis
    • Whole genome alignments for O. longistaminata and T. cacao
    • Non-coding RNA gene models in Bacteria
    • New assembly of tomato (version 2.50)
    • Full support for UCSC Track Hub format for hosting your own data in Ensembl

    More at http://www.ensembl.info/blog/2015/06/16/ensembl-genomes-release-27-is-out/

    ]]>     Jit     https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon Thu, 03 Dec 2015 05:52:09 -0600 https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon <![CDATA[ArrayGen Next Generation Genome Browser Coming Soon !!!]]> The ANG genome browser is a visualization tool, developed by ArrayGen Technologies. This is a fast and an efficient genome browser, built with Javafx and Java swing. ANG genome browser was built for latest next generation sequencing data analysis. It is platform independent and much simpler to use.

    The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM and it can be integrated with other browsers or tools for analysis of genome.

    ]]>     ArrayGen Technologies