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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/1886?offset=610</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38577/genoviz-visualization-software-for-genomics</guid>
	<pubDate>Wed, 02 Jan 2019 04:07:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38577/genoviz-visualization-software-for-genomics</link>
	<title><![CDATA[GenoViz: Visualization software for genomics]]></title>
	<description><![CDATA[<p><span>GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser (IGB).</span><br><br><span>For more information about IGB, visit&nbsp;</span><a href="http://bioviz.org/" target="_blank">http://bioviz.org<span></span></a><span>.</span><br><br><span>Source code for the project was hosted here for many years. In 2014, we moved to a new git repository at&nbsp;</span><a href="http://www.bitbucket.org/lorainelab/integrated-genome-browser" target="_blank">http://www.bitbucket.org/lorainelab/integrated-genome-browser<span></span></a><span>. We are still using SourceForge to distribute new releases of IGB as compiled code (igb.zip) you can use to run IGB on your computer.&nbsp;</span><br><br><span>If you have questions, feel free to get in touch. Contact project head Ann Loraine (</span><a href="mailto:aloraine@uncc.edu" target="_blank">aloraine@uncc.edu<span></span></a><span>) or lead developer David Norris (</span><a href="mailto:dcnorris@uncc.edu" target="_blank">dcnorris@uncc.edu<span></span></a><span>&gt;).</span></p><p>Address of the bookmark: <a href="https://sourceforge.net/projects/genoviz/" rel="nofollow">https://sourceforge.net/projects/genoviz/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40476/libsdyogen-libibrary-for-comparative-genomics</guid>
	<pubDate>Wed, 25 Dec 2019 01:32:39 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40476/libsdyogen-libibrary-for-comparative-genomics</link>
	<title><![CDATA[LibsDyogen: Libibrary for comparative genomics]]></title>
	<description><![CDATA[<p>Library of usual classes and functions written in python and used in the Dyogen team for comparative genomics applications.</p>
<p>Collaborative python library used in the<span>&nbsp;</span><a href="http://www.ibens.ens.fr/?rubrique43&amp;lang=fr">DYOGEN team</a>for studying the evolution of gene order in vertebrates.</p>
<p><a href="http://www.ibens.ens.fr/?rubrique43&amp;lang=fr">http://www.ibens.ens.fr/?rubrique43&amp;lang=fr</a></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://github.com/DyogenIBENS/LibsDyogen" rel="nofollow">https://github.com/DyogenIBENS/LibsDyogen</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41493/coronavirus-resources</guid>
	<pubDate>Wed, 25 Mar 2020 17:11:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41493/coronavirus-resources</link>
	<title><![CDATA[Coronavirus Resources !]]></title>
	<description><![CDATA[<p><span>2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC. It also incorporates a wide range of relevant information including scientific literatures, news, and popular articles for science dissemination, and provides visualization functionalities for genome variation analysis results based on all collected 2019-nCoV strains.</span></p>
<p><span>Annotation</span></p>
<p><span><a href="https://bigd.big.ac.cn/ncov/variation/annotation">https://bigd.big.ac.cn/ncov/variation/annotation</a></span></p>
<p><span>Genome wharehouse&nbsp;</span></p>
<p><span><a href="https://bigd.big.ac.cn/gwh/browse/index">https://bigd.big.ac.cn/gwh/browse/index</a></span></p>
<p>Released Genome</p>
<p><a href="https://bigd.big.ac.cn/ncov/release_genome">https://bigd.big.ac.cn/ncov/release_genome</a></p>
<p>Download data&nbsp;</p>
<p><a href="ftp://download.big.ac.cn/Genome/Viruses/Coronaviridae/">ftp://download.big.ac.cn/Genome/Viruses/Coronaviridae/</a></p>
<p>Raw data</p>
<p><a href="https://bigd.big.ac.cn/gsa/browse/run/?tag=Coronaviridae">https://bigd.big.ac.cn/gsa/browse/run/?tag=Coronaviridae</a></p><p>Address of the bookmark: <a href="https://bigd.big.ac.cn/ncov/about" rel="nofollow">https://bigd.big.ac.cn/ncov/about</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/14338/biology-computers-collide-in-high-demand-field-of-bioinformatics</guid>
	<pubDate>Mon, 25 Aug 2014 00:56:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/14338/biology-computers-collide-in-high-demand-field-of-bioinformatics</link>
	<title><![CDATA[Biology, Computers Collide in High-Demand Field of Bioinformatics]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/fk0z7KOTyMo" frameborder="0" allowfullscreen></iframe>Dr. Shivas Amin calls bioinformatics a "collision of biology and computers." Students learn how to use computers and skills in math and biology to analyze genome and proteome projects to prepare for high-demand jobs in the life sciences. Learn more about Amin and hear from student Medina Baitemirova and alumnus Lukas Simon about the fast-growing field of bioinformatics.]]></description>
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43046/postdoctoral-fellow-for-a-large-scale-microbial-comparative-genomics</guid>
  <pubDate>Thu, 29 Apr 2021 08:44:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[postdoctoral fellow for a large-scale microbial comparative genomics !]]></title>
  <description><![CDATA[
<p>Asaf Levy hiring a postdoctoral fellow for a large-scale microbial comparative genomics project at the Hebrew University of Jerusalem (Israel). <br />The project is a continuation of Levy Asaf et al. Nature Genetics 2018 paper.<br />Requirements: <br />1.Experience with programming in at least one programming language, preferably Python.<br />2.A PhD in bioinformatics/computational biology<br />3.At least one first authorship publication in a good journal, preferably more.<br />4.Good communication skills in English <br />5.Ability to enter and study in Israel (not applicable for Pakistani people, for example). <br />6.Ability to work in a team.<br />Please send CV to alevy@mail.huji.ac.il</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/14800/a-comprehensive-atlas-of-human-gene-activity-released</guid>
	<pubDate>Tue, 02 Sep 2014 14:20:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/14800/a-comprehensive-atlas-of-human-gene-activity-released</link>
	<title><![CDATA[A comprehensive atlas of human gene activity released !!!]]></title>
	<description><![CDATA[<div><div id="postDescription_4018558404"><p>A large international consortium of researchers has produced the first comprehensive, detailed map of the way&nbsp;<a href="http://www.hsph.harvard.edu/news/topic/genetics/" target="_blank">genes</a>&nbsp;work across the major cells and tissues of the human body. The findings describe the complex networks that govern gene activity, and the new information could play a crucial role in identifying the genes involved with disease.</p><p><img src="http://www.kurzweilai.net/images/Coexpression-clustering.jpg" alt="image" width="640" height="460" style="border: 0px; border: 0px;"></p><p>We are able to pinpoint the regions of the genome that can be active in a disease and in normal activity, whether it&rsquo;s in a brain cell, the skin, in blood stem cells or in hair follicles. This is a major advance that will greatly increase our ability to understand the causes of disease across the body.</p><p>The research is outlined in a series of papers published March 27, 2014, two in the journal&nbsp;<em>Nature</em>&nbsp;and 16 in other scholarly journals. The work is the result of years of concerted effort among 250 experts from more than 20 countries as part of&nbsp;<a href="http://fantom.gsc.riken.jp/" target="_blank">FANTOM 5 (Functional Annotation of the Mammalian Genome)</a>. The FANTOM project, led by the Japanese institution RIKEN, is aimed at building a complete library of human genes.</p><p>Researchers studied human and mouse cells using a new technology called Cap Analysis of Gene Expression (CAGE), developed at RIKEN, to discover how 95% of all human genes are switched on and off. These &ldquo;switches&rdquo; &mdash; called &ldquo;promoters&rdquo; and &ldquo;enhancers&rdquo; &mdash; are the regions of DNA that manage gene activity. The researchers mapped the activity of 180,000 promoters and 44,000 enhancers across a wide range of human cell types and tissues and, in most cases, found they were linked with specific cell types.</p><p>Referene : www.kurzweilai.net/first-comprehensive-atlas-of-human-gene-activity-released</p></div></div>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43791/comparative-genomics-visualisation-tools</guid>
	<pubDate>Thu, 17 Feb 2022 05:37:55 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43791/comparative-genomics-visualisation-tools</link>
	<title><![CDATA[Comparative genomics visualisation tools !]]></title>
	<description><![CDATA[<p>Comparative genomics visualisation tools !</p><p>Address of the bookmark: <a href="https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&amp;selected=%23BRIG&amp;tag=Comparative" rel="nofollow">https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&amp;selected=%23BRIG&amp;tag=Comparative</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/14927/which-of-the-following-programming-language-is-best-for-a-bioinformatics-beginner</guid>
	<pubDate>Thu, 04 Sep 2014 07:51:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/14927/which-of-the-following-programming-language-is-best-for-a-bioinformatics-beginner</link>
	<title><![CDATA[Which of the following programming language is best for a bioinformatics beginner?]]></title>
	<description><![CDATA[<p>I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Which languages would you recommend to a student wishing to enter the world of bioinformatics?</p>]]></description>
	<dc:creator>Manisha Mishra</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4549/mab-lab</guid>
  <pubDate>Sun, 15 Sep 2013 09:28:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[MAB Lab]]></title>
  <description><![CDATA[
<p>Seamless integration of a series of biological processes finally manifests as what we perceive as "Life". In order to gain insights about life and its manifestations in different forms (from single cell to multicellular forms), we seek to understand the underlying mechanistic basis of biological processes at the molecular level and integrate them at the systems level. Towards this, we employ a combination of approaches encompassing Bioinformatics &amp; Computational Biology, Biochemical and Biophysical approaches and X-ray crystallography. Our current research interests pertains to RNA Biology and Molecular Evolution.</p>

<p>More @ http://www.iitg.ernet.in/banand/index.html</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4546/sowdhamini-lab</guid>
  <pubDate>Sun, 15 Sep 2013 09:19:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[SOWDHAMINI Lab]]></title>
  <description><![CDATA[
<p>Genome sequencing projects have enormous potential for benefiting human endeavors. However, just as acquiring a language's vocabulary does not enable one to speak it, databases that list the amino acid composition of proteins do not directly tell us much about these proteins' higher-level structure and function. The most productive way to indirectly exploit these databases has been to start with the small number of proteins that are fully-characterised and to assume that other "similar" proteins will have a related structure and function. Proteins with very similar amino acid sequence are "no-brainers", but the real test, which our group largely focuses on, is to detect the "essential" similarity in proteins whose non-critical sections have experienced random rearrangements during evolution. In such cases functionally similar proteins may have less than 25% sequence overlap.</p>

<p>More @ http://www.ncbs.res.in/sowdhamini/groups_sowdhamini.htm</p>
]]></description>
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