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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/1886?offset=980</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/38257/bioinformatics-programme-officer-international-centre-for-genetic-icgeb-engineering-and-biotechnology</guid>
  <pubDate>Fri, 23 Nov 2018 03:50:16 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Programme Officer @ International Centre for Genetic ICGEB Engineering and Biotechnology]]></title>
  <description><![CDATA[
<p>The following vacancies are available in the DBT Apex Biotechnology Information project at ICGEB, New Delhi, India. These positions are available for a period of approx. two years, however, initial appointment offer will be for 6 months, which will be extended based on performance of work. Salaries will be offered as per DBT, educational qualification and experience. Depending on requirements, selected candidates may be required to work on location from the Department of Biotechnology, New Delhi. Shortlisted candidates will be invited for an interview at ICGEB. Only the selected candidates will be informed individually. No TA/DA or accommodation will be offered to the candidates attending the interview. </p>

<p>4 Programme Officer 1 <br />5 Technical Research Assistant 1 </p>

<p>Minimum Educational Qualification, desirable experience and expected duties: </p>

<p>4: The applicants should be Postgraduates with experience in Data collection and Statistics, especially in Biotechnology-related data. </p>

<p>Expected duties: Collection of Biotechnology related information from India, to facilitate the Apex BTIC experts committee review of programmes at centres and R&amp;D programs funded by DBT. </p>

<p>5: The applicants should be Postgraduates in Science with experience in Bioinformatics-related projects. <br />Expected duties: The candidates will assist the senior staff of the centre in daily activities and help in the preparation of the Annual Training Calendar, seminar and training podcasts/videos, repository of training material and Apex BTIC Newsletter. </p>

<p>Interested candidates should submit their full, updated Curriculum Vitae with a detailed description of relevant experience, along with two references by December 14th, 2018, addressed to, The Chairperson, DBT- Apex BTIC, ICGEB, Aruna Asaf Ali Marg, New Delhi 110067, Email: abtic@icgeb.res.in, kindly write “Application for DBT Apex BTIC vacancy” in the subject of the email or envelope, if sending by post.</p>

<p>Advertisement: http://www.icgeb.org/tl_files/Vacancies/dbt-abtic-vac-annmntrevsk.pdf</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/2573/most-commonly-used-awk-by-bioinformatician</guid>
	<pubDate>Mon, 19 Aug 2013 01:12:38 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/2573/most-commonly-used-awk-by-bioinformatician</link>
	<title><![CDATA[Most Commonly used Awk by Bioinformatician]]></title>
	<description><![CDATA[<p style="text-align: center;">&nbsp;</p><p>Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Although you can achieve all its functionality with Perl, awk is simpler in many practical cases.</p><p>Why awk? You can replace a pipeline of 'stuff | grep | sed | cut...' with a single call to awk. For a simple script, most of the timelag is in loading these apps into memory, and it's much faster to do it all with one. This is ideal for something like an openbox pipe menu where you want to generate something on the fly. You can use awk to make a neat one-liner for some quick job in the terminal, or build an awk section into a shell script. You can find a lot of online tutorials, but here I will only show a few examples which cover most of bioinformatician daily uses of awk.</p><p>choose rows where column 3 is larger than column 5:</p><p>awk '$3&gt;$5' input.txt &gt; output.txt</p><p>extract column 2,4,5:</p><p>awk '{print $2,$4,$5}' input.txt &gt; output.txt</p><p>awk 'BEGIN{OFS="\t"}{print $2,$4,$5}' input.txt</p><p>show rows between 20th and 80th:</p><p>awk 'NR&gt;=20&amp;&amp;NR&lt;=80' input.txt &gt; output.txt</p><p>calculate the average of column 2:</p><p>awk '{x+=$2}END{print x/NR}' input.txt</p><p>regex (egrep):</p><p>awk '/^test[0-9]+/' input.txt</p><p>calculate the sum of column 2 and 3 and put it at the end of a row or replace the first column:</p><p>awk '{print $0,$2+$3}' input.txt</p><p>awk '{$1=$2+$3;print}' input.txt</p><p>join two files on column 1:</p><p>awk 'BEGIN{while((getline&lt;"file1.txt")&gt;0)l[$1]=$0}$1 in l{print $0"\t"l[$1]}' file2.txt &gt; output.txt</p><p>count number of occurrence of column 2 (uniq -c):</p><p>awk '{l[$2]++}END{for (x in l) print x,l[x]}' input.txt</p><p>apply "uniq" on column 2, only printing the first occurrence (uniq):</p><p>awk '!($2 in l){print;l[$2]=1}' input.txt</p><p>count different words (wc):</p><p>awk '{for(i=1;i!=NF;++i)c[$i]++}END{for (x in c) print x,c[x]}' input.txt</p><p>deal with simple CSV:</p><p>awk -F, '{print $1,$2}'</p><p>substitution (sed is simpler in this case):</p><p>awk '{sub(/test/, "no", $0);print}' input.txt</p><p>&nbsp;</p><p>OK now here's where to read this stuff properly explained. roll</p><p>Two thorough tutorials:</p><p>http://www.gnu.org/software/gawk/manual/gawk.html</p><p>http://www.grymoire.com/Unix/Awk.html</p><p>A famous list of useful one-liners - though they're short, many are quite tricky:</p><p>http://www.pement.org/awk/awk1line.txt</p><p>And some nice explanations of those one-liners. After reading this you'll have a pretty good grasp!</p><p>http://www.catonmat.net/blog/awk-one-li &hellip; -part-one/</p><p>http://www.catonmat.net/blog/ten-awk-ti &hellip; -pitfalls/</p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39025/binc-exam-merged-with-dbt-bet-jrf-exam</guid>
	<pubDate>Thu, 21 Feb 2019 09:37:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39025/binc-exam-merged-with-dbt-bet-jrf-exam</link>
	<title><![CDATA[BINC Exam merged with DBT- BET JRF Exam]]></title>
	<description><![CDATA[<p>Another breaking news received has been received from the Department of biotechnology &ndash; DBT. As per a notification released by DBT, Bioinformatics National Certification (BINC) Exam conducted once per year by DBT has been now merged with DBT- BET JRF Exam.</p><p>Also, Bioinformatics Industrial Training Program (BIITP) is merged with the HRD Biotechnology Industrial Training Programme (BITP).</p><p>While this comes as a surprise for a lot of participants. We believe this is a good attempt to unify and create a national benchmark for talent. And we appreciate this endeavor from Department of biotechnology.</p><p>However, such last-minute announcements can create confusion. Thus candidates are advised to go through the complete notification DBT-BET JRF 2019 via the link below.If you have any kind of doubts, you must contact DBT JRF or Biotecnika for any kind of help &amp; assistance.</p><p><br />Attention:-Bioinformatics Programs (BINC and BIITP)</p><p>1. Bioinformatics National Certification (BINC) has been merged with DBT-Junior<br />Research Fellow (BET Exam)</p><p>2. Bioinformatics Industrial Training Program (BIITP) is merged with HRDBiotechnology Industrial Training Programme (BITP).</p><p>Students of Bioinformatics, who are interested to apply for Fellowship or Industrial<br />Training may keep track of the advertisement of DBT-JRF (BET Exam) and BITP<br />of DBT.</p><p>&nbsp;More at&nbsp;http://www.bcil.nic.in/files/Attention_Bioinformatics_Programs_(BINC_and_BIITP).pdf</p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4106/phd-at-national-institute-for-research-in-reproductive-health</guid>
  <pubDate>Fri, 30 Aug 2013 04:50:35 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD at National Institute for Research in Reproductive Health]]></title>
  <description><![CDATA[
<p>National Institute for Research in Reproductive Health</p>

<p>(Indian Council of Medical Research )<br />Jehangir Merwanji Street, Parel, Mumbai 400 012</p>

<p>Advertisement No. 1/NIRRH/Ph.D. 2013<br />Admission to Ph.D. Programme – 2013</p>

<p>National Institute for Research in Reproductive Health, Mumbai, a premier institute of the Indian Council of Medical Research, conducts basic, clinical and operational research in different areas of reproductive health. The thrust areas of research include: Fertility Regulation, Infertility and Reproductive Disorders, Reproductive Tract Infections, Maternal and Child Health, Osteoporosis, Genetic Disorders, Stem Cell Biology, Structural Biology, Bioinformatics and Reproductive Toxicology. Institute is affiliated to the University of Mumbai for the award of Ph.D. degree in Applied Biology, Biochemistry, Life Sciences and Biotechnology. The institute invites applications from young and bright students for enrollment in Ph.D. programme.</p>

<p>More at http://www.nirrh.res.in/announcements/phd_program_2013.htm</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40235/bioinformatics-web-development-course</guid>
	<pubDate>Wed, 06 Nov 2019 20:42:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40235/bioinformatics-web-development-course</link>
	<title><![CDATA[Bioinformatics web development course]]></title>
	<description><![CDATA[<p>This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to develop and deploy web applications for Bioinformatics.</p>
<p>No previous programming knowledge is assumed. By following this tutorial you will learn the fundamental concepts of programming by using scripting languages: variables, types, arrays, cycles, conditional statements, functions, objects, regular expressions, files reading and manipulation et-cetera.</p><p>Address of the bookmark: <a href="http://www.cellbiol.com/bioinformatics_web_development/introduction/" rel="nofollow">http://www.cellbiol.com/bioinformatics_web_development/introduction/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/2742/baumbach-lab</guid>
  <pubDate>Wed, 21 Aug 2013 10:56:35 -0500</pubDate>
  <link></link>
  <title><![CDATA[Baumbach Lab]]></title>
  <description><![CDATA[
<p>The Computational Biology research group was established in October 2012 at the Department of Mathematics and Computer Science (IMADA) at the University of Southern Denmark (SDU). It emerged from the Computational Systems Biology group, founded in March 2010 at the Max Planck Institute for Informatics (MPII) and the Cluster of Excellence for Multimodel Computing and Interaction (MMCI) at Saarland University, Saarbrücken, Germany.<br />​<br />The group is headed by Prof. Dr. Jan Baumbach and currently hosts nine PhD students and one postdoctoral fellow at both, IMADA/SDU and MMCI/MPII.</p>

<p>More at &gt;&gt; http://www.baumbachlab.net/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2839/look-up-a-biological-numbers</guid>
	<pubDate>Fri, 23 Aug 2013 03:27:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2839/look-up-a-biological-numbers</link>
	<title><![CDATA[Look up a biological numbers]]></title>
	<description><![CDATA[<p><strong>Did you ever need to look up a number</strong><span>&nbsp;like the volume of a cell or the cellular concentration of ATP, only to find yourself spending much more time than you wanted on the Internet or flipping through textbooks - all without much success?&nbsp;</span><br><br><span>Well, it didn&rsquo;t happen only to you. It is often surprising how difficult it can be to find concrete biological numbers, even for properties that have been measured numerous times. To help solve this for one and all, BioNumbers (</span><strong>the database of key numbers in molecular biology</strong><span>) was created. Along with the numbers, you'll find the relevant&nbsp;</span><strong>references to the original literature</strong><span>, useful comments, and related numbers.&nbsp;</span></p>
<p><span><span>To cite BioNumbers please refer to: Milo et al. Nucl. Acids Res. (2010) 38: D750-D753. When using a specific entry from the database it is highly recommended that you also specify the BioNumbers 6 digit ID, e.g. "BNID 100986, Milo et al 2010".&nbsp;</span></span></p><p>Address of the bookmark: <a href="http://bionumbers.hms.harvard.edu/" rel="nofollow">http://bionumbers.hms.harvard.edu/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/3952/ancestor-at-work</guid>
	<pubDate>Sun, 25 Aug 2013 19:45:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/3952/ancestor-at-work</link>
	<title><![CDATA[Ancestor at work !!!]]></title>
	<description><![CDATA[<p>When they will learn Bioinformatics :)</p>]]></description>
	<dc:creator>Jit</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/3952" length="10064" type="image/gif" />
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42164/postdoctoral-researcher-in-statistical-bioinformatics-at-orebro-university</guid>
  <pubDate>Wed, 26 Aug 2020 10:20:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Researcher in Statistical Bioinformatics at Örebro University]]></title>
  <description><![CDATA[
<p>The position is in Medical Sciences, with special focus on Statistical Bioinformatics.</p>

<p>The position is a full-time position for a fixed term of two years. The salary depends on the successful candidate’s qualifications and experience.</p>

<p>For more information, please contact Prof. Dirk Repsilber,This is an email address, Prof. Hugo Hesser, This is an email addressor Prof. Allan Sirsjö, allan.This is an email address, or Prof. Robert Brummer,This is an email address.</p>

<p>Örebro University actively pursues an equal work environment and values the qualities that diversity adds to our operations.</p>

<p>More detail at https://www.oru.se/english/working-at-orebro-university/jobs-and-vacancies/job/?jid=20200286/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4835/chang-lab</guid>
  <pubDate>Tue, 24 Sep 2013 17:25:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Chang lab]]></title>
  <description><![CDATA[
<p>The Chang lab is focused on how the activities of hundreds or even thousands of genes (gene parties) are coordinated to achieve biological meaning. We have pioneered methods to predict, dissect, and control large-scale gene regulatory programs; these methods have provided insights into human development, cancer, and aging. A particular interest is how cells know and remember their locations in the body, particularly with the help of long noncoding RNAs.</p>

<p>More at http://changlab.stanford.edu/index.html</p>
]]></description>
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