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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/19087?offset=710</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18380/jrfsrf-at-university-of-hyderabad</guid>
  <pubDate>Fri, 17 Oct 2014 01:55:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF/SRF at University of Hyderabad]]></title>
  <description><![CDATA[
<p>Applications are invited for the following post of Junior Research Fellow (temporary position coterminous with the project) under DBT funded research project on ““Understanding the functions of α1β1γ1/α2β1γ1 selective AMPK Modulators in dissecting the pharmacological role of these isozymes in metabolic diseases”</p>

<p>Qualified and interested candidates can send their curriculum vitae by e-mail to hr@drils.org on or before 27th October 2014 mention in the subject line of the mail the following code: AMPK-Biology.</p>

<p>Selected candidates will be called for a personal interview to Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad. The selected candidate is expected to report within two weeks from the date of selection to start work on the project.</p>

<p>Junior Research Fellowship (Molecular Modeling/Biology) for two years and Senior Research fellowship for one year</p>

<p>Junior Research Fellowship: Rs. 15,600/- (consolidated) per month for first two years.<br />Senior Research Fellowship: Rs. 18,200/-(consolidated) per month for the 3rd year.</p>

<p>Duration: The duration of the fellowship is for three years. However, the performance of the candidate will be reviewed after the completion of every year and the fellowship will be renewed only upon satisfactory performance.</p>

<p>Responsibilities:</p>

<p>1) Literature search.<br />2) Design, plan and execute experiments under the supervision of the scientist.<br />3) Provide scientific support to the scientist in his/her research activities.<br />4) Book keeping and maintenance of stocks and consumables.</p>

<p>Essential Qualifications:</p>

<p>Required: M.Sc. in Microbiology/Biotechnology/Bioinformatics or any other related branch of basic Sciences from a recognized university/institute with a consistent academic record of minimum 60% aggregate in all qualifying examinations. The candidate should be NET qualified for lectureship. The candidate should be motivated to work with dedication.</p>

<p>Desirable: expertise/experience in both Molecular Modeling and Molecular Biology.</p>

<p>Experience: 0-2 years in the areas of Molecular Modeling and/or Molecular Biology and cell biology and Biochemistry.</p>

<p>Preferable: Relevant research experience as evident from thesis/dissertation/project work.</p>

<p>Advertisement: http://www.ilsresearch.org/userfiles/Junior%20REsearch%20Fellowship%20-%20AMPK(Biology).pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/40770/scientist-bioinformatics-positions</guid>
  <pubDate>Thu, 30 Jan 2020 06:53:40 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist Bioinformatics Positions]]></title>
  <description><![CDATA[
<p>Bioinformatics-Multi_Omics_Integration</p>

<p>https://www.researchgate.net/job/939073_Senior_Scientist_Bioinformatics-Multi_Omics_Integration</p>

<p> <br />Senior_Scientist_Bioinformatics-Transcriptomics_Analysis     </p>

<p>https://www.researchgate.net/job/939075_Senior_Scientist_Bioinformatics-Transcriptomics_Analysis-Belgium_France_Switzerland_The_Netherlands</p>

<p>Senior Scientist Bioinformatics - Network Analytics</p>

<p>https://www.researchgate.net/job/939070_Senior_Scientist_Bioinformatics-Network_Analytics_Belgium_France_Switzerland_the_Netherlands</p>

<p>Team Leader Bioinformatics Data Sciences - Mechelen, Belgium</p>

<p>https://www.researchgate.net/job/938787_Team_Leader_Bioinformatics_Data_Sciences-Mechelen_Belgium</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18385/biinformamatics-lead-at-google-life-sciences</guid>
  <pubDate>Fri, 17 Oct 2014 02:24:55 -0500</pubDate>
  <link></link>
  <title><![CDATA[Biinformamatics Lead at Google Life Sciences]]></title>
  <description><![CDATA[
<p>Google Life Sciences is recruiting a technical lead with experience in bioinformatics and clinical bioinformatics, including for biomarker discovery projects such as the Baseline study.</p>

<p>Responsibilities</p>

<p>Lead teams of scientists in structuring, prototyping, and executing large-scale bioinformatic and other analysis.<br />Develop novel bioinformatics, statistical, data processing, pathway, data mining and other algorithms to identify biological signals and their clinical correlates in broad kinds of individual and population data.<br />Develop novel platform-level analytical tools for sequence-based assays (assembly, annotation, variant calling and interpretation, phasing, genome structure, etc.), expression assays (RNAseq and microarray), proteomics, and metabolomics.<br />Develop statistical models that robustly correlate complex laboratory-derived information with phenotypic and clinical information.<br />Create scientifically rigorous visualizations, communications, and presentations of results.</p>

<p>Reference @ https://www.google.com/about/careers/search#!t=jo&amp;jid=62095001</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42313/crbhits-from-conditional-reciprocal-best-hits-to-codon-alignments-and-kaks-in-r</guid>
	<pubDate>Wed, 11 Nov 2020 23:06:03 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42313/crbhits-from-conditional-reciprocal-best-hits-to-codon-alignments-and-kaks-in-r</link>
	<title><![CDATA[CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R]]></title>
	<description><![CDATA[<p>CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculations and synteny. The new R package targets ecology, population and evolutionary biologists working in the field of comparative genomics.</p><p>Address of the bookmark: <a href="https://gitlab.gwdg.de/mpievolbio-it/crbhits" rel="nofollow">https://gitlab.gwdg.de/mpievolbio-it/crbhits</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44541/powerful-books-for-learning-data-analysis-with-r</guid>
	<pubDate>Tue, 28 May 2024 07:42:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44541/powerful-books-for-learning-data-analysis-with-r</link>
	<title><![CDATA[Powerful books for learning data analysis with R]]></title>
	<description><![CDATA[<p><span>R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R today:</span></p>
<p><span>https://csgillespie.github.io/efficientR/</span></p>
<p><span>https://r-graphics.org/</span></p>
<p><span>https://rstudio-education.github.io/hopr/</span></p>
<p><span>https://r-pkgs.org/</span></p>
<p><span>https://r4ds.had.co.nz/</span></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://r-graphics.org/" rel="nofollow">https://r-graphics.org/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</guid>
	<pubDate>Thu, 18 May 2017 05:31:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</link>
	<title><![CDATA[maf2synteny]]></title>
	<description><![CDATA[<p>A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat)</p>
<p>This tool is a standalone version of Ragout module [<a href="http://fenderglass.github./Ragout">http://fenderglass.github./Ragout</a>]</p><p>Address of the bookmark: <a href="https://github.com/fenderglass/maf2synteny" rel="nofollow">https://github.com/fenderglass/maf2synteny</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35252/hgt-finder-a-new-tool-for-horizontal-gene-transfer-finding-and-application-to-aspergillus-genomes</guid>
	<pubDate>Wed, 17 Jan 2018 05:03:19 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35252/hgt-finder-a-new-tool-for-horizontal-gene-transfer-finding-and-application-to-aspergillus-genomes</link>
	<title><![CDATA[HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes]]></title>
	<description><![CDATA[<p><span>HGT-Finder: </span></p>
<p><span>(i) can be used for HGT detection in both prokaryotes and eukaryotes, </span></p>
<p><span>(ii) can report a statistical&nbsp;</span><em>P</em><span>&nbsp;value for each gene to indicate how likely it is to be horizontally transferred, and </span></p>
<p><span>(iii) is fully automated (requires minimal human intervention), as well as very easy to install and run.&nbsp;</span></p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626719/" rel="nofollow">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626719/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38581/cvit-chromosome-viewing-tool</guid>
	<pubDate>Wed, 02 Jan 2019 04:10:09 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38581/cvit-chromosome-viewing-tool</link>
	<title><![CDATA[CViT: Chromosome Viewing Tool]]></title>
	<description><![CDATA[<p><span>CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.</span></p>
<p><span>https://www.hindawi.com/journals/ijpg/2011/373875/</span></p><p>Address of the bookmark: <a href="https://sourceforge.net/projects/cvit/" rel="nofollow">https://sourceforge.net/projects/cvit/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44571/panacus-a-counting-tool-for-pangenome-graphs</guid>
	<pubDate>Fri, 14 Jun 2024 14:42:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44571/panacus-a-counting-tool-for-pangenome-graphs</link>
	<title><![CDATA[Panacus : A Counting Tool for Pangenome Graphs]]></title>
	<description><![CDATA[<p dir="auto"><code>panacus</code>&nbsp;is a tool for calculating statistics for&nbsp;<a href="https://github.com/GFA-spec/GFA-spec/blob/master/GFA1.md">GFA</a>&nbsp;files. It supports GFA files with&nbsp;<code>P</code>&nbsp;and&nbsp;<code>W</code>&nbsp;lines, but requires that the graph is&nbsp;<code>blunt</code>, i.e., nodes do not overlap and consequently, each link (<code>L</code>) points from the end of one segment (<code>S</code>) to the start of another.</p>
<p dir="auto"><code>panacus</code>&nbsp;supports the following calculations:</p>
<ul dir="auto">
<li>coverage histogram</li>
<li>pangenome growth statistics</li>
<li>path-/group-resolved coverage table</li>
</ul><p>Address of the bookmark: <a href="https://github.com/marschall-lab/panacus" rel="nofollow">https://github.com/marschall-lab/panacus</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/45270/when-dna-data-tells-the-wrong-story-crossfit-assist-to-resolve</guid>
	<pubDate>Fri, 04 Sep 2026 03:41:38 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/45270/when-dna-data-tells-the-wrong-story-crossfit-assist-to-resolve</link>
	<title><![CDATA[When DNA Data Tells the Wrong Story - CrossFit assist to resolve !]]></title>
	<description><![CDATA[<p>Imagine comparing humans and chimpanzees to discover which genes make us different. You have millions of RNA-sequencing reads&mdash;but there is a catch: the computer may align these reads more easily to one species' genome than the other.</p><p>Suddenly, a technical error can look like a biological difference.</p><p>This is the problem Kenneth A. Barr and Yoav Gilad tackle with CrossFilt, a new computational tool introduced in Genome Biology journal.</p><p>CrossFilt acts like a careful referee. It keeps only sequencing reads that can be reliably compared across species, filtering out reads that could create alignment bias.</p><p>When tested on human, chimpanzee, and rhesus macaque data, CrossFilt reduced false discoveries and produced more reliable cross-species comparisons.</p><p>The message is simple: before asking what makes species different, we need to make sure our methods aren't creating those differences.</p><p>In genomics, sometimes the most important discovery is finding&mdash;and removing&mdash;the bias hiding in the data.</p><p>Read more at&nbsp;https://link.springer.com/article/10.1186/s13059-026-04082-2?</p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

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