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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/19555?offset=1500</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35400/zpicture-a-dynamic-blastz-alignment-visualization</guid>
	<pubDate>Tue, 30 Jan 2018 16:03:08 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35400/zpicture-a-dynamic-blastz-alignment-visualization</link>
	<title><![CDATA[zPicture: A dynamic blastz alignment visualization]]></title>
	<description><![CDATA[<p><span>zPicture is a dynamic alignment and&nbsp;</span><span>visualization</span><span>&nbsp;tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.</span></p><p>Address of the bookmark: <a href="https://zpicture.dcode.org/" rel="nofollow">https://zpicture.dcode.org/</a></p>]]></description>
	<dc:creator>Archana Malhotra</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26559/microscope</guid>
	<pubDate>Fri, 04 Mar 2016 05:26:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26559/microscope</link>
	<title><![CDATA[Microscope]]></title>
	<description><![CDATA[<p>Microscope Platform user documentation.</p>
<p>The MicroScope platform is available at this URL:</p>
<p><a href="https://www.genoscope.cns.fr/agc/microscope">https://www.genoscope.cns.fr/agc/microscope</a></p><p>Address of the bookmark: <a href="http://microscope.readthedocs.org/en/latest/index.html" rel="nofollow">http://microscope.readthedocs.org/en/latest/index.html</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37259/epiviz-an-interactive-visualization-tool-for-functional-genomics-data</guid>
	<pubDate>Mon, 09 Jul 2018 05:27:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37259/epiviz-an-interactive-visualization-tool-for-functional-genomics-data</link>
	<title><![CDATA[Epiviz: an interactive visualization tool for functional genomics data.]]></title>
	<description><![CDATA[<p><span>Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the&nbsp;</span><a href="http://barcode.luhs.org/" target="_blank">Gene Expression Barcode project</a><span>&nbsp;for transcriptome visualization. It has a flexible plugin framework so users can add</span><a href="http://d3js.org/" target="_blank">d3</a><span>&nbsp;visualizations. You can see a video tour&nbsp;</span><a href="http://youtu.be/099c4wUxozA" target="_blank">here</a><span>.</span></p>
<p><span>https://bioconductor.org/packages/release/bioc/html/epivizr.html</span></p>
<p><span>https://github.com/epiviz</span></p>
<p><span>https://github.com/epiviz/epiviz</span></p><p>Address of the bookmark: <a href="https://epiviz.github.io/" rel="nofollow">https://epiviz.github.io/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26500/postdoc-at-iiser-tvm</guid>
  <pubDate>Fri, 26 Feb 2016 03:53:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[PostDoc at IISER -TVM]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship/ Research Associateship</p>

<p>Eligibility : M Phil / Phd</p>

<p>Location : Thiruvananthapuram</p>

<p>Last Date : 30 Apr 2016</p>

<p>Hiring Process : Face to Face Interview<br />IISER -TVM </p>

<p>The Postdoctoral Fellowship/Research Associateship is a full-time, contractual position for highly qualified young scientists to carry out research at CCMS, IISER-TVM.</p>

<p>Research areas at the Centre</p>

<p>Quantum Chemistry/ Computational Fluid Dynamics/Condensed Matter Physics (Theory)/Genomics/Genetics/Gravitational Waves</p>

<p>Qualifications: PhD in Bioinformatics / Biophysics / Physics / Astrophysics / Chemistry / Mathematics / Engineering (Mechanical/Aerospace) Those who are in the final stages of their Ph.D. thesis submission are also eligible to apply. However, those candidates must have submitted the thesis at the time of the interview.</p>

<p>Experience: Applicants should have at least three peer reviewed publications and relevant experience in the research area they are applying for.</p>

<p>No. of positions: 5</p>

<p>Age limit: 35 yrs or below. A relaxation of 5 yrs will be applicable to candidates belonging to SC/ST/OBC and women candidates</p>

<p>Salary: The Fellowship carries a remuneration of INR Rs. 5,18,000 - Rs. 5,76,000 per annum (including HRA). The postdoctoral fellowship may not be held concurrently with any other national or international fellowships. It is also not transferable to any other fellowship<br />How to apply</p>

<p>Applications should reach the Head, CCMS, IISER Thiruvananthapuram,CET Campus, Engineering College PO,Thiruvananthapuram 695016 on or before April 30, 2016 by e-mail to ccms@iisertvm.ac.in by mentioning the research area name in the subject line. </p>

<p>More at http://www.iisertvm.ac.in/openings/read_opening/150.phpx</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38646/visnetwork-an-r-package-for-network-visualization-using-visjs-javascript-library</guid>
	<pubDate>Wed, 09 Jan 2019 11:00:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38646/visnetwork-an-r-package-for-network-visualization-using-visjs-javascript-library</link>
	<title><![CDATA[visNetwork: an R package for network visualization, using vis.js javascript library]]></title>
	<description><![CDATA[<div id="introduction">
<p><strong>visNetwork</strong>&nbsp;is an R package for network visualization, using&nbsp;<strong>vis.js</strong>&nbsp;javascript library (<a href="http://visjs.org/">http://visjs.org/</a>). All remarks and bugs are welcome on github :&nbsp;<a href="https://github.com/datastorm-open/visNetwork">https://github.com/datastorm-open/visNetwork</a>.</p>
</div>
<div id="features">
<h2>Features</h2>
<p>Based on&nbsp;<a href="http://www.htmlwidgets.org/">htmlwidgets</a>, so :</p>
<ul>
<li>compatible with&nbsp;<a href="http://shiny.rstudio.com/">shiny</a>, R Markdown documents, and RStudio viewer</li>
</ul>
<p>The package proposes all the features available in&nbsp;<strong>vis.js</strong>&nbsp;API, and even more with special features for R :</p>
<ul>
<li>easy to use</li>
<li>custom shapes, styles, colors, sizes, &hellip;</li>
<li>works smooth on any modern browser for up to a few thousand nodes and edges</li>
<li>interactivity controls (highlight, collapsed nodes, selection, zoom, physics, movement of nodes, tooltip, events, &hellip;)</li>
<li>visualize&nbsp;<code>rpart</code>&nbsp;tree</li>
<li></li>
</ul>
</div><p>Address of the bookmark: <a href="https://datastorm-open.github.io/visNetwork/" rel="nofollow">https://datastorm-open.github.io/visNetwork/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40964/panev-an-r-package-for-a-pathway-based-network-visualization</guid>
	<pubDate>Sun, 09 Feb 2020 12:41:52 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40964/panev-an-r-package-for-a-pathway-based-network-visualization</link>
	<title><![CDATA[PANEV: an R package for a pathway-based network visualization]]></title>
	<description><![CDATA[<p><span>PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of multiple levels (from 1 to&nbsp;</span><em>n</em><span>) of interconnected upstream and downstream pathways. The network graph visualization helps to interpret functional profiles of a cluster of genes.</span></p>
<p><span><a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3371-7">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3371-7</a></span></p><p>Address of the bookmark: <a href="https://github.com/vpalombo/PANEV" rel="nofollow">https://github.com/vpalombo/PANEV</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44414/reconplot-an-r-package-for-the-visualization-and-interpretation-of-genomic-rearrangements</guid>
	<pubDate>Thu, 14 Dec 2023 12:33:19 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44414/reconplot-an-r-package-for-the-visualization-and-interpretation-of-genomic-rearrangements</link>
	<title><![CDATA[ReConPlot: an R package for the visualization and interpretation of genomic rearrangements]]></title>
	<description><![CDATA[<p>ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing customization of plots and the generation of publication-quality figures with minimal effort.</p><p>Address of the bookmark: <a href="https://academic.oup.com/bioinformatics/article/39/12/btad719/7460198?login=false" rel="nofollow">https://academic.oup.com/bioinformatics/article/39/12/btad719/7460198?login=false</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26363/flo</guid>
	<pubDate>Wed, 10 Feb 2016 10:52:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26363/flo</link>
	<title><![CDATA[flo]]></title>
	<description><![CDATA[<p>flo - same species annotations lift over pipeline</p>
<p>Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimentally verified) are available on the old assembly.</p>
<p>The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver).</p>
<p>&nbsp;</p>
<p>https://github.com/wurmlab/flo</p><p>Address of the bookmark: <a href="https://github.com/wurmlab/flo" rel="nofollow">https://github.com/wurmlab/flo</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26382/project-assistant-jrf-at-north-eastern-hill-university</guid>
  <pubDate>Fri, 12 Feb 2016 09:23:01 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant/ JRF at North Eastern Hill University]]></title>
  <description><![CDATA[
<p>Project Assistant/ JRF</p>

<p>Eligibility : ME/M.Tech, Any Graduate, MSc</p>

<p>Location : Shillong</p>

<p>Last Date : 23 Feb 2016</p>

<p>Hiring Process : Face to Face Interview<br />North Eastern Hill University</p>

<p>Project Assistant/ JRF Jobs recruitment in North Eastern Hill University on temporary basis</p>

<p>Project Title : "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India"</p>

<p>Project Assistant</p>

<p>No. of Post : 01</p>

<p>Qualifications : Graduation</p>

<p>Desirable : Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples.</p>

<p>JRF</p>

<p>No. of Post : 01</p>

<p>Qualifications : M.Tech/M.Sc in Life Sciences/Botany/Biotechnology/ Bioinformatics;</p>

<p>Desirable : Aptitude for Bioinformatics and Computer Programming/ Next generation sequencing data analysis<br />How to apply</p>

<p>The applications through email bicnehu@gmail.com or post must reach the Dr. Devendra Kumar Biswal, Co-Principal Investigator (Co-PI) within 15 days from the date of publication of this advertisement.</p>

<p>More at http://www.nehu.ac.in/Advertisements/projectVacancy.php</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26438/scientist-at-regional-medical-research-centre-icmr-rmrc-port-blair</guid>
  <pubDate>Mon, 22 Feb 2016 04:38:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist at Regional Medical Research Centre (ICMR), RMRC, Port Blair]]></title>
  <description><![CDATA[
<p>Scientist</p>

<p>Eligibility : MSc, M Phil / Phd, BE/B.Tech</p>

<p>Location : Delhi</p>

<p>Last Date : 08 Mar 2016</p>

<p>Hiring Process : Walk - In<br />Regional Medical Research Centre - </p>

<p>Notification Order No.1-51/Proj/RMRC/PB/</p>

<p>Scientist – II (Post Code: BIC-II) job position in Regional Medical Research Centre (ICMR)</p>

<p>Essential Qualification: 1 st class Master’s degree in Bioinformatics / Computational Biology.  B.E / B.Tech (Bioinformatics / Computer Science / Biotechnology) OR 2nd Class M.Sc. with Ph.D. in Bioinformatics / Computational Biology / Life Science.</p>

<p>Desirable Qualification:  Post-doctoral research experience in Bioinformatics / Computational Biology / Computer Science / Life Science at a recognized institution.  Experience in handling and analyzing sequencing data.  Experience in scripting languages (PERL/PYTHON) etc./ Statistical software.  Experience in developing research projects.</p>

<p>Number of Post: 1 UR</p>

<p>Place of Posting: RMRC, Port Blair </p>

<p>Age Limit: 40 years</p>

<p>Pay Scale : Rs.45,954<br />How to apply</p>

<p>Interested candidates are invited to submit applications along with copies of all the certificates of educational qualifications, date of birth, working experience etc . on the affixing a passport size photograph by Application Format to attend a walk-in interview on 8th March 2016 at 10:30 AM.</p>

<p>More at http://www.icmr.nic.in/icmrnews/port%20blair%20Bioinf%2003-2016.pdf</p>
]]></description>
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