<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/19560?offset=650 https://bioinformaticsonline.com/bookmarks/view/28842/repeatmodeler Thu, 18 Aug 2016 09:57:15 -0500 https://bioinformaticsonline.com/bookmarks/view/28842/repeatmodeler <![CDATA[RepeatModeler]]> RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.

Address of the bookmark: http://www.repeatmasker.org/RepeatModeler.html

]]> Jit https://bioinformaticsonline.com/bookmarks/view/28906/gene-finding-and-predictions Fri, 26 Aug 2016 07:26:27 -0500 https://bioinformaticsonline.com/bookmarks/view/28906/gene-finding-and-predictions <![CDATA[Gene Finding and Predictions]]> In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA sequences) methods will be employed in order to improve the ab initio results. Weak conservation of Start codons will lead to wrong prediction of initial exons in most cases.

http://genome.crg.es/courses/Bioinformatics2003_genefinding/

Address of the bookmark: http://genome.crg.es/courses/Bioinformatics2003_genefinding/

]]> Poonam Mahapatra