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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/19631?offset=1230</link>
	<atom:link href="https://bioinformaticsonline.com/related/19631?offset=1230" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/31251/bioinformatics-opening-at-icgeb-new-delhi</guid>
  <pubDate>Thu, 02 Mar 2017 04:16:36 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics opening at ICGEB NEW DELHI]]></title>
  <description><![CDATA[
<p>ICGEB NEW DELHI</p>

<p>Applications are invited for:</p>

<p>Junior Research Fellow, in a DBT funded project, is available in Translational Health Group, ICGEB, New Delhi</p>

<p>Qualifications:</p>

<p>Education: M.Sc. (preferably in Biotechnology, Life Sciences or Zoology, Chemistry, Bioinformatics). Candidates with hands on experience on GC-MS data acquisition and analysis will be given preference. Bioinformatics expertise required.</p>

<p>Fellowship: As per DBT guidelines.</p>

<p>Tenure: The position is purely on temporary basis with an initial tenure of six months and based on satisfactory performance may continue until the completion of the project.</p>

<p>Closing date for applications: 04/03/2017</p>

<p>Please send a "TWO PAGE" CV by email to:  th.icgeb@gmail.com on or before the last date.</p>

<p>Research Associate, in a DBT funded project, is available in Translational Health Group, ICGEB, New Delhi</p>

<p>Qualifications:</p>

<p>Education: Ph.D. (in Biology, Biotechnology, Chemistry, Bioinformatics). Candidates with hands on experience on GC-MS data acquisition and analysis will be given preference. </p>

<p>Fellowship: As per DBT guidelines.</p>

<p>Tenure: The position is purely on temporary basis with an initial tenure of six months and  based on satisfactory performance may continue until the completion of the project.</p>

<p>Closing date for applications: 04/03/2017</p>

<p>Please send a "TWO PAGE" CV by email to: th.icgeb@gmail.com on or before the last date.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32048/json</guid>
	<pubDate>Tue, 04 Apr 2017 08:02:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32048/json</link>
	<title><![CDATA[JSON]]></title>
	<description><![CDATA[<p><strong>JSON</strong>&nbsp;(JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write. It is easy for machines to parse and generate. It is based on a subset of the&nbsp;<a href="http://javascript.crockford.com/">JavaScript Programming Language</a>,&nbsp;<a href="http://www.ecma-international.org/publications/files/ecma-st/ECMA-262.pdf">Standard ECMA-262 3rd Edition - December 1999</a>. JSON is a text format that is completely language independent but uses conventions that are familiar to programmers of the C-family of languages, including C, C++, C#, Java, JavaScript, Perl, Python, and many others. These properties make JSON an ideal data-interchange language.</p>
<p>JSON is built on two structures:</p>
<ul>
<li>A collection of name/value pairs. In various languages, this is realized as an&nbsp;<em>object</em>, record, struct, dictionary, hash table, keyed list, or associative array.</li>
<li>An ordered list of values. In most languages, this is realized as an&nbsp;<em>array</em>, vector, list, or sequence.</li>
</ul>
<p>These are universal data structures. Virtually all modern programming languages support them in one form or another. It makes sense that a data format that is interchangeable with programming languages also be based on these structures.</p><p>Address of the bookmark: <a href="http://json.org/" rel="nofollow">http://json.org/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/view/138</guid>
	<pubDate>Wed, 10 Jul 2013 16:30:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/view/138</link>
	<title><![CDATA[Selecting between Python 2 and Python 3?]]></title>
	<description><![CDATA[<p>Which version is best for bioinformatician to work on?</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32134/lifemap</guid>
	<pubDate>Mon, 10 Apr 2017 05:42:37 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32134/lifemap</link>
	<title><![CDATA[Lifemap]]></title>
	<description><![CDATA[<p><strong>Lifemap</strong> is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in <strong>Lifemap</strong> is similar to the one used in cartography with tools like Google Maps&copy; or Open Street Maps: exploring is done by zooming and panning.</p>
<div>
<p>&nbsp;The current tree contains ALL species present in NCBI taxonomy as of <span style="text-decoration: underline;">October 18th, 2016</span>: 1,135,169 species including 10,545 Archaea, 418,777 Bacteria and 705,847 Eukaryotes. The Lifemap tree is updated every two weeks.</p>
</div>
<p>&nbsp;All the nodes in the tree are clickable. This displays various information and options:</p>
<ul>
<li>The species name (and the associated common name if there is one)</li>
<li>The rank (kingdom, family, class, species...)</li>
<li>Ability to go to the corresponding node/species on NCBI web site (displayed in a new window)</li>
<li>Possibility to download the corresponding subtree in newick extended format</li>
<li>Possibilty to get the whole lineage from the current node/tip to the root of the tree.</li>
</ul><p>Address of the bookmark: <a href="http://lifemap-ncbi.univ-lyon1.fr/" rel="nofollow">http://lifemap-ncbi.univ-lyon1.fr/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/841/research-fellow</guid>
  <pubDate>Sat, 13 Jul 2013 11:23:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF CALCUTTA</p>

<p>A walk-in-interview will be held on 15.7.2013 at 12 noon in the Department of Biophysics, Molecular Biology and Bioinformatics, 92 A.P.C Road, Kolkata-700 009 to select one trainee research fellow and two students under DIC. The positions are purely temporary and would be for a period of six months from the date of joining which may be extended by another six months subject to successful performance.</p>

<p>Qualification:</p>

<p>For the Trainee Research Fellow: Should have a master degree in Bioinformatics or allied subjects and should have biological database development experience. Must have at least one publication.</p>

<p>For the Students: Should have a master degree in Bioinformatics or allied subjects and should be proficient in C-programming language. Must be familiar with techniques of Developmental Biology.</p>

<p>The Trainee Research Fellow would be paid a consolidated sum of Rs 10000/- per month and the students would be paid a sum amount Rs. 7000/- per month during the tenure of the project.</p>

<p>Advertisement:<br />www.caluniv.ac.in/News%20&amp;%20Announcement/trainee_rf_DIC.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32187/chromhmm-chromatin-state-discovery-and-characterization</guid>
	<pubDate>Wed, 19 Apr 2017 04:06:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32187/chromhmm-chromatin-state-discovery-and-characterization</link>
	<title><![CDATA[ChromHMM: Chromatin state discovery and characterization]]></title>
	<description><![CDATA[<p><span>ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.&nbsp;</span><br><br></p>
<ul>
<li><a href="http://compbio.mit.edu/ChromHMM/ChromHMM.zip">ChromHMM software v1.12</a>&nbsp;(<a href="http://compbio.mit.edu/ChromHMM/versionlog.txt">version log</a>)</li>
<li><a href="http://compbio.mit.edu/ChromHMM/ChromHMM_manual.pdf">ChromHMM manual</a></li>
</ul><p>Address of the bookmark: <a href="http://compbio.mit.edu/ChromHMM/" rel="nofollow">http://compbio.mit.edu/ChromHMM/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32376/diamond</guid>
	<pubDate>Thu, 27 Apr 2017 04:21:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32376/diamond</link>
	<title><![CDATA[DIAMOND]]></title>
	<description><![CDATA[<p><span>DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000.</span></p>
<p><span>More at&nbsp;file:///home/urbe/Downloads/diamond_manual.pdf</span></p>
<p><span>http://www.nature.com/nmeth/journal/v12/n1/full/nmeth.3176.html</span></p><p>Address of the bookmark: <a href="https://github.com/bbuchfink/diamond" rel="nofollow">https://github.com/bbuchfink/diamond</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/862/dumontier-lab</guid>
  <pubDate>Sun, 14 Jul 2013 12:51:42 -0500</pubDate>
  <link></link>
  <title><![CDATA[Dumontier Lab]]></title>
  <description><![CDATA[
<p>Our research aims to better understand how living systems respond to chemical agents. A key aspect of our approach involves using computational frameworks that are powered by formal (i.e. machine understandable) semantics to make effectively use of vast and diverse amounts of biomedical knowledge. We are particularly interested in understanding how the response to chemical exposure is modulated by genetic and physiological variation among individuals and how this translates into altered capabilities at the molecular level.</p>

<p>Research Area</p>

<p>the discovery and on-demand use of biomedical data and services<br />the formulation, discovery and evaluation of scientific hypotheses<br />the simulation of biological systems at the level of individual molecules</p>

<p>Link @ http://dumontierlab.com/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</guid>
	<pubDate>Wed, 10 May 2017 04:51:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</link>
	<title><![CDATA[Ten International Scholarships for Indian Biotechnology and Bioinformatics Students]]></title>
	<description><![CDATA[<p>Wherever you go around the world, Indian students are in demand. With countries such as Canada and Australia providing huge incentives to Indian students to lure them to their shores, there are many institutions around the world that offer scholarships exclusively to Indian students. Historically these scholarships tend to be aimed towards Masters and PhD programmes however on the rise are scholarships for undergraduate students. Student World Online takes a look at ten international scholarships for Indian undergraduate students abroad.</p><p><br /><span><strong>1.&nbsp;</strong></span><strong><a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship"><span>TATA SCHOLARSHIP</span></a></strong>&nbsp;- Cornell University, New York State, USA<br />Tata, the Indian multinational conglomerate company, have a foundation known as the Tata Education &amp; Development Trust which has&nbsp;<span style="text-decoration: underline;"><a href="http://www.news.cornell.edu/stories/2008/10/tata-trust-gives-50-million-endowment-cornell" target="_blank">endowed a multi million dollar sum to Cornell University</a></span>&nbsp;to provide undergraduate scholarships to 20 Indian students every year. &nbsp;In another example of supporting American universities, the Tata group also pledged US$50 million to Harvard University in recent years, whose executive management programme&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Ratan_Tata" target="_blank">Ratan Tata</a></span>&nbsp;attended in the 1970s. &nbsp;<a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship" target="_blank"><span><span style="text-decoration: underline;">Read more...&nbsp;</span></span></a>&nbsp;<br /><br /><strong><span>2.</span></strong>&nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><strong><span>BRADMAN FOUNDATION SCHOLARSHIP</span></strong></a>&nbsp;- University of Wollongong, Australia.<br />Named after Australia's cricket legend&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Donald_Bradman" target="_blank">Donald Bradman</a></span>, the&nbsp;<span style="text-decoration: underline;"><a href="https://www.uow.edu.au/content/groups/public/@web/@unia/documents/doc/uow145334.pdf" target="_blank">UOW Bradman Foundation Scholarship</a></span>&nbsp;was launched in 2012, with the help of Adam Gilchrist no less, to offer one successful Indian student each year a 50% reduction in tuition fees. &nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a>&nbsp;&nbsp;</p><p><span><strong>3.&nbsp;</strong></span><strong><a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span>HUAWEI MAITREE SCHOLARSHIPS</span></a></strong>&nbsp;- Various Universities, China<br />Along with Tata, Huawei are the other huge corporation to be featured. &nbsp;China's massive telecoms equipment vendor are involved in these scholarships offered to Indian students studying in China. &nbsp;In 2013 there are 10 generous scholarships available which provide full tuition fees and living expenses. &nbsp;The courses on which the scholarships are offered include Science and Technology courses, Social Sciences and Culture and Development courses. &nbsp;<a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>4.&nbsp;</strong></span><strong><a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span>DR. MANMOHAN SINGH SCHOLARSHIPS</span></a></strong>&nbsp;- Cambridge University, England, UK<br />These scholarships have been designed to help budding Indian minds follow in the footsteps of&nbsp;<span style="text-decoration: underline;"><a href="http://pmindia.nic.in/" target="_blank">Indian prime minister Manmohan Singh</a></span>&nbsp;by studying at the prestigious Cambridge University. &nbsp;The scholarships can be applied to any undergarduate course (with the two exceptions of medicine and veterinary science) and cover everything, i.e. tuition and college fees, living expenses and an additional grant to go towards travel expenses. &nbsp;<a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>5.&nbsp;</strong></span><strong><a href="http://www.oxbridgeindia.com/scholarship.php"><span>OXFORD AND CAMBRIDGE SOCIETY OF INDIA</span></a></strong>&nbsp;- Oxford &amp; Cambridge Universities, England, UK<br />As the name might suggest, these are scholarships available for students wishing to study at Oxford or Cambridge (cleverly known together as&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Oxbridge" target="_blank">Oxbridge</a></span>). &nbsp;It is only available for applicants who are completing or have completed a degree at an Indian university, however these scholarships are for both undergraduate and graduate students.&nbsp;&nbsp;<a href="http://www.oxbridgeindia.com/scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>6.&nbsp;</strong></span><strong><a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span>EDINBURGH NAPIER UNIVERSITY</span></a></strong>&nbsp;- Scotland, UK<br />This one applies to all countries in the Indian subcontinent and is for both undergraduate and graduate courses. Edinburgh Napier University offers a merit based discount of &pound;2,000 Pounds. &nbsp;<a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>7.&nbsp;</strong></span><strong><a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span>SHEFFIELD UNIVERSITY</span></a></strong>&nbsp;- Sheffield, UK<br />Provides merit-based scholarships for undergraduate and graduate programmes across all subjects<span>.</span>&nbsp;<a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>8.&nbsp;</strong></span><strong><a href="http://www.india4eu.eu/scholarships" target="_blank"><span>INDIA 4EU II</span></a></strong>&nbsp;- Several Universities across Europe<br />Pioneered by the European Union and involving partner universities in France, Finland, Germany, Italy, Portugal, Spain and Sweden,&nbsp;<span style="text-decoration: underline;"><a href="http://www.india4eu.eu/" target="_blank">the India 4EU II initiative</a></span>&nbsp;is aimed at encouraging Indian students to study, work and live in Europe. &nbsp;The initiative is well funded and allows the successful students tuition fees, expenses for living and travel costs as well as insurance during their time at one of the partner universities. &nbsp;<a href="http://www.india4eu.eu/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>9.&nbsp;</strong></span><strong><a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span>TRINITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Valid for undergraduate courses in the faculties of Arts, Humanities, Social Sciences, Science, Computer Science or Engineering, the Trinity College Dublin offers Indian students scholarships to the tune of&nbsp;&euro;9,000 per annum over a year degree course. &nbsp;<a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>10.&nbsp;</strong></span><strong><a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/" target="_blank"><span>UNIVERSITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Another of Ireland and Dublin's finest, the UCD awards one Global Excellence Undergraduate Scholarship which provides the worthy student a substantial 50% towards their tuition fees and is valid for all courses save medicine, radiography and veterinary medicine. &nbsp;UCD also offers a Global Undergraduate Scholarship scheme for undergrads accepted on science, social sciences, arts and business courses. &nbsp;This is all thanks to a &euro;250,000 fund that will allow for 57 Indian students to benefit from scholarships at UCD. &nbsp;<a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/"><span><span style="text-decoration: underline;">Read more...</span></span></a></p>]]></description>
	<dc:creator>Priya Singh</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/868/the-upton-vbrc-lab</guid>
  <pubDate>Sun, 14 Jul 2013 13:25:41 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Upton (VBRC) lab]]></title>
  <description><![CDATA[
<p>This Bioinformatics Resource (Virology.ca, the Canadian half of the now defunct VBRC)  focuses on large DNA viruses:<br />Poxviruses<br />African Swine Fever Viruses<br />Iridoviruses<br />Baculoviruses</p>

<p>Research Area</p>

<p>Custom searches of the viral databases<br />Building new tools .<br />The genome annotation<br /> <br />Link @ http://athena.bioc.uvic.ca/</p>
]]></description>
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