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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/19636?offset=1060</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/33903/visiting-scientist-computational-genomics</guid>
  <pubDate>Mon, 17 Jul 2017 07:20:18 -0500</pubDate>
  <link></link>
  <title><![CDATA[Visiting Scientist - Computational Genomics]]></title>
  <description><![CDATA[
<p>ICRISAT is a non-profit, non-political organization that conducts agricultural research for development in Asia and sub-Saharan Africa with a wide array of partners throughout the world. ICRISAT and its partners help empower those living in the semi-arid tropics, especially smallholder farmers, to overcome poverty, hunger, malnutrition and a degraded environment through more efficient and profitable agriculture. </p>

<p>ICRISAT is headquartered in Patancheru near Hyderabad, India, with two regional hubs and five country offices in sub-Saharan Africa. ICRISAT, established in 1972, is a member of the CGIAR Consortium. For more details, see www.icrisat.org.</p>

<p>Job Responsibilities:<br />Planning and execution of different NGS/genomics data analysis<br />Apply, maintain, and support cutting-edge pipelines for the analysis and interpretation of NGS data<br />Analyze large-scale genomic datasets generated internally and through collaboration with others<br />Genome wide analysis- LD analysis, hapmap, genetic map construction and qtl mapping<br />Expression analysis based on RNA-seq, gene ontology and metabolic pathway data<br />Sequence level analysis like gene family analysis, orthology/paralogy etc.<br />Familiarity with genomic and biological information databases<br />Compilation and interpretation of results and writing reports<br />Experience working independently and in a team environment<br />Requirements:</p>

<p>PhD or M.Sc with 2-3 years experience from reputed institute in the area of life science or similar Knowledge in Next Generation Sequencing (NGS) data analysis. Should be familiar with various sequencing platforms. Sound knowledge of genomics and molecular biology is must. Proficient in any one of the programming/scripting in languages: Python, Perl, PHP, R, Shell Scripting. Must be experienced in working on Linux and CLI environment. Ability to work as team as well as independently with minimal support. Fluency in spoken and written English is essential. </p>

<p>NGS techniques like sequence alignment, variant calling based on whole genome re-sequencing and genotyping-by-sequencing (GBS), RNA-Seq/transcriptome analysis<br />Knowledge of various standard NGS related tool<br />Ability to solve complex problems in advanced genomics research areas<br />Ease and interest in working with people from diverse backgrounds<br />Excellent oral/written communication and interpersonal/networking skills<br />General: <br />This position is contract for a period of two years.</p>

<p>How to apply:<br />Applicants should apply on or before 27-July-2017, with latest Curriculum Vitae, and the names and contact information of three references that are knowledgeable about your professional qualifications and work experience. All applications will be acknowledged, however only short listed candidates will be contacted<br />Please CLICK HERE to submit your application. <br />ICRISAT is an equal opportunity employer</p>

<p>http://icrisat.careersitemanager.com/job-listings-Visiting-Scientist-Computational-Genomics-ICRISAT-Hyderabad-Secunderabad-2-to-4-years-060717000278</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34624/teacheng-teaching-engine-for-genomics</guid>
	<pubDate>Wed, 13 Dec 2017 17:55:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34624/teacheng-teaching-engine-for-genomics</link>
	<title><![CDATA[TeachEnG: Teaching Engine for Genomics]]></title>
	<description><![CDATA[<p>TeachEnG (pronounced &ldquo;teaching&rdquo;), a <span style="text-decoration: underline;">Teach</span>ing <span style="text-decoration: underline;">En</span>gine for <span style="text-decoration: underline;">G</span>enomics, provides educational games to help students and researchers understand key bioinformatics concepts. The current version includes interactive modules for sequence alignment and phylogenetic tree reconstruction algorithms, with accompanying video tutorials. <br><br> Please contact us via email (knoweng@illinois.edu) if you have any questions or suggestions.&nbsp;</p><p>Address of the bookmark: <a href="http://teacheng.illinois.edu/" rel="nofollow">http://teacheng.illinois.edu/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/37248/postdoctoral-research-assistant-at-rvc</guid>
  <pubDate>Mon, 09 Jul 2018 00:47:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Research Assistant at RVC]]></title>
  <description><![CDATA[
<p>This is a fixed term post for 24 months.</p>

<p>We wish to recruit a highly motivated, postdoctoral scientist to carry out a BBSRC funded project in the laboratory of Dr. Denis Larkin. The project is focused on developing and applying new methods and algorithms to study genome and chromosome evolution in mammals and other animals using whole-genome sequences and existing algorithms (e.g., Damas et al. Genome Res. 2017. 27(5):875-884; Kim et al., Proc Natl Acad Sci USA. 2013. 110 (5)). The post holder will use cutting edge computational and laboratory approaches to generate chromosomal assemblies for sequenced genomes, study chromosomal structures and differences between mammalian and other vertebrate genomes in attempt to identify species- and clade-specific genome signatures.</p>

<p>Applicants must have a Ph.D. and a track record of success, as indicated by first-author publications in international journals. They must possess excellent organisation skills and be capable of individual initiative and of interacting as part of a team. Applicants with extensive practical experience in bioinformatics or computer science, programming, visualization, handling of large data sets, high-performance computing are encouraged to apply. The post will involve collaboration with a wide range of academic partners both within the EU and worldwide.</p>

<p>Experience in programming, bioinformatics and comparative genome analysis is essential. Applicants should have a minimum of a degree and preferably a higher degree in a relevant subject.</p>

<p>The Royal Veterinary College has the largest range of veterinary, para-veterinary and animal science undergraduate and postgraduate courses of any veterinary school in the world and is one of the largest veterinary schools in Europe.</p>

<p>Prospective applicants are encouraged to contact Dr. Denis Larkin, Comparative Biomedical Sciences Department on +442071211906 or email: dlarkin@rvc.ac.uk</p>

<p>We offer a generous reward package.</p>

<p>For further information and to apply on-line please visit our website: www.rvc.ac.uk<br />Job reference CBS-0084-18</p>

<p>https://jobs.rvc.ac.uk/Vacancy.aspx?ref=CBS-0084-18</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/42137/plant-computational-genomics-lab-%E2%80%93-jill-wegrzyn</guid>
  <pubDate>Thu, 20 Aug 2020 19:49:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN]]></title>
  <description><![CDATA[
<p>Our research focuses on the computational analysis of genomic and transcriptomic sequences from non-model plant species. We do this by developing approaches to examine gene finding, gene expression, transcriptome assembly, and conserved element identification, through machine learning and computational statistics. We use these novel methods to address questions related to genome biology and population genomics.</p>

<p>We also develop web-based applications that integrate data across domains to facilitate the forest geneticist or ecologist’s ability to analyze, share, and visualize their data. Such integration requires the implementation of semantic technologies and ontologies to connect genotype, phenotype, and environmental data.</p>

<p>http://plantcompgenomics.com/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42712/scientist-c-non-medical-it-expert-computer-professionalgenomicsbioinformatic-at-nimr</guid>
  <pubDate>Mon, 01 Feb 2021 13:54:06 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist C - Non-Medical (IT Expert- Computer Professional/Genomics/Bioinformatic) at NIMR]]></title>
  <description><![CDATA[
<p>Applications are invited upto 12th February 2021 in the prescribed format (available on the websites of ICMR-NIMR) through link http://onlineapply.nimr.org.in/ up to 05:00 PM on 12th February 2021 for the following post on contract basis at NIMR, Sector-8, Dwarka, New Delhi.</p>

<p>Scientist C - Non-Medical (IT Expert- Computer Professional/Genomics/Bioinformatic)No. of posts: 01 (UR)</p>

<p>Salary (Fixed): Rs.51,000/- + HRA</p>

<p>Essential Qualification: Candidate should possess 1st class master degree in relevant subjects from a recognized university with 4 years experience<br />OR<br />2nd class M.Sc + Ph.D degree in relevant subjects from a recognized university with 4 years experience.Desirable Qualification: Candidates should possess a PhD degree in any field of science.<br />Preference will be given to those who have published scientific papers in international journals and who have a track record of working in infectious diseases.</p>

<p>The candidate must know the following for further consideration: (a) data processing and analysis using statistical softwares, (d) programming, (e) presentation of complex data from excel files and related skills.<br />Understanding of GIS and malaria will be an advantage. Experience and interest in functional genomics and genomic sequencing will be important.</p>

<p>Age Limit: 40 YearsDuration: 30.09.2021</p>

<p>More at http://onlineapply.nimr.org.in/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/44395/genomics-india-conference-2024</guid>
  <pubDate>Fri, 27 Oct 2023 05:48:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[Genomics India Conference 2024 !]]></title>
  <description><![CDATA[
<p>Genomics India Conference is back and this time we are coming to Shiv<br />Nadar Intitution of Eminenece, Delhi NCR. GIC 2024 will be held from 1st<br />to 3rd of February 2024 and we are happy to send you an early invitation<br />for India's premier genomics conference.</p>

<p>GIC2024 focuses on "Advances In Genomics From AI-ML To Targeted<br />Therapies". GIC2024 encourages researchers to present original<br />contributions for poster presentations.</p>

<p>Note: Early bird registration closes on 1st December 2023.</p>

<p>Kindly, register at GIC 2024 Earlybird registartion</p>

<p>https://genomicsindia.co.in/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/44679/rennison-lab</guid>
  <pubDate>Sat, 26 Oct 2024 15:10:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Rennison Lab !]]></title>
  <description><![CDATA[
<p>Welcome to the Rennison lab in the School of Biological Sciences at the University of California San Diego. We are a group interested in the evolution and maintenance of biodiversity. We study the processes related to biodiversity using methods from the fields of evolution, ecology, population genomics, and theory. </p>

<p>More at https://rennisonlab.com/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/3885/precision-medicine</guid>
	<pubDate>Sat, 24 Aug 2013 15:47:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/3885/precision-medicine</link>
	<title><![CDATA[Precision Medicine]]></title>
	<description><![CDATA[<p>Coupling established clinical&ndash;pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements &mdash; hence the term &ldquo;Precision medicine&rdquo;&nbsp;</p>
<p>Source:<a href="http://www.nejm.org/doi/full/10.1056/NEJMp1114866">http://www.nejm.org/doi/full/10.1056/NEJMp1114866</a></p>
<p><strong>Another video on precision medicine</strong>:</p>
<p><a href="http://www.youtube.com/watch?v=Pi8W0yOXnzE">http://www.youtube.com/watch?v=Pi8W0yOXnzE</a></p>
<p>Precision Medicine basically intergrates bioinformatics, genomics , genetics, molecular biology and nanotechnology to deliver precise cure/diagnotics to a specific patient.</p>
<p>Examples:</p>
<ul>
<li><span>The drug imatinib (Gleevec) designed to inhibit an altered enzyme produced by a fused version of two genes found in chronic myelogenous leukemia.</span></li>
<li><span>The breast cancer drug trastuzumab (Herceptin) works only for women whose tumors have a particular genetic profile called HER-2 positive.</span></li>
</ul>
<p><span>E.g. source :</span></p>
<p><span><a href="http://www.bionews-tx.com/news/2013/08/15/how-the-impact-of-cancer-genomics-on-precision-medicine-is-revolutionizing-cancer-treatment/">http://www.bionews-tx.com/news/2013/08/15/how-the-impact-of-cancer-genomics-on-precision-medicine-is-revolutionizing-cancer-treatment/</a></span></p><p>Address of the bookmark: <a href="http://www.cbsnews.com/video/watch/?id=50149783n" rel="nofollow">http://www.cbsnews.com/video/watch/?id=50149783n</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34485/phyloxml-xml-for-evolutionary-biology-and-comparative-genomics</guid>
	<pubDate>Wed, 29 Nov 2017 10:04:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34485/phyloxml-xml-for-evolutionary-biology-and-comparative-genomics</link>
	<title><![CDATA[phyloXML:  XML for evolutionary biology and comparative genomics]]></title>
	<description><![CDATA[<p><a href="http://www.biomedcentral.com/1471-2105/10/356/">phyloXML</a><span>&nbsp;(</span><a href="http://www.phyloxml.org/examples_syntax/phyloxml_syntax_example_1.html">example</a><span>) is an&nbsp;</span><a href="http://en.wikipedia.org/wiki/XML">XML</a><span>&nbsp;language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events. Using these standardized elements allows interoperability between various applications and databases. Furthermore, both due to extensible nature of XML itself and the provision of &lt;property&gt; elements by phyloXML, extensibility as well as domain specific applications are ensured. The structure of phyloXML is described by&nbsp;</span><a href="http://en.wikipedia.org/wiki/XML_Schema_%28W3C%29">XML Schema Definition (XSD)</a><span>&nbsp;language.</span></p><p>Address of the bookmark: <a href="http://www.phyloxml.org/" rel="nofollow">http://www.phyloxml.org/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36267/pspairwise-sequentially-markovian-coalescent-psmc-model</guid>
	<pubDate>Thu, 19 Apr 2018 05:29:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36267/pspairwise-sequentially-markovian-coalescent-psmc-model</link>
	<title><![CDATA[PSPairwise Sequentially Markovian Coalescent (PSMC) model]]></title>
	<description><![CDATA[<p><span>Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model</span></p><p>Address of the bookmark: <a href="https://github.com/lh3/psmc" rel="nofollow">https://github.com/lh3/psmc</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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