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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/1970?offset=240</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/40204/iitm-tokyo-tech-joint-symposium</guid>
	<pubDate>Thu, 24 Oct 2019 10:30:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/40204/iitm-tokyo-tech-joint-symposium</link>
	<title><![CDATA[IITM-Tokyo Tech Joint Symposium]]></title>
	<description><![CDATA[<p>The IITM-Tokyo Tech Joint Symposium is a biannual international symposium held in Indian Institute of Technology Madras (IITM), India in collaboration with Tokyo Institute of Technology (Tokyo-Tech), Japan. During the symposium, experts in various domains of Bioinformatics gather from India and Japan under one roof to discuss and present their works. This provides an unique opportunity to the researchers and students to learn the frontiers and interact with eminent scientists in Bioinformatics. The 5th IITM - Tokyo Tech Joint Symposium titled "Current trends in Bioinformatics: Big data analysis, machine learning and drug design", will be held on 6th - 7th March 2020 in IITM, Chennai, India.</p><p>The symposium will focus on topics in the below mentioned areas.</p><p>Topics: Algorithms for biomolecular sequences / structures Bioinformatics databases and tools Protein function Structure based drug design Machine learning Deep learning Large scale data analysis Big Data NGS Analysis Protein interactions/network Molecular modelling/docking/screening Biomolecular structure and function More</p><p>Info: https://web.iitm.ac.in/bioinfo2/symposium2020/home</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/43092/where-to-aproach-for-rd-funds-in-india</guid>
	<pubDate>Thu, 24 Jun 2021 01:04:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/43092/where-to-aproach-for-rd-funds-in-india</link>
	<title><![CDATA[Where to Aproach for R&amp;D Funds in India ?]]></title>
	<description><![CDATA[<p>Companies and governments do research and development (R&amp;D/ R'n'D/ R+D) to promote innovation in order to produce new goods or services and/or enhance existing product lines. R&amp;D covers all actions inside an organization aimed at boosting innovation, such as creating incubators, assisting innovators in scaling up their ideas, and cultivating an innovation culture.</p><p>Here are the list of all the research and development funding agencies in India.</p>]]></description>
	<dc:creator>Surabhi Chaudhary</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/43092" length="73912" type="application/pdf" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39612/bioclues-and-pine-biotech-join-forces-to-advance-bioinformatics-in-india</guid>
	<pubDate>Fri, 14 Jun 2019 10:20:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39612/bioclues-and-pine-biotech-join-forces-to-advance-bioinformatics-in-india</link>
	<title><![CDATA[Bioclues and Pine Biotech join forces to advance Bioinformatics in India]]></title>
	<description><![CDATA[<p><img src="https://edu.t-bio.info/wp-content/uploads/2019/06/PineBio-Bioclues.jpg" alt="Bioclues and Pine Biotech join forces" width="1280" height="720" style="border: 0px; border: 0px;">&nbsp;As a collaborative effort, the two organizations will help implement best practices in bioinformatics education across universities in Inida that have little to no experience in bioinformatics. The collaboration comes as Pine Biotech starts registrations for it's pilot program at Amity University in Kolkata, India.</p><p>To read more about this collaboration, visit:&nbsp;https://edu.t-bio.info/pine-biotech-joins-forces-with-the-bioclues-organization-to-promote-bioinformatics/</p>]]></description>
	<dc:creator>eliabrodsky</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/856/papenfuss-lab</guid>
  <pubDate>Sun, 14 Jul 2013 12:22:28 -0500</pubDate>
  <link></link>
  <title><![CDATA[Papenfuss Lab]]></title>
  <description><![CDATA[
<p>The human genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which causes malaria in humans, have provided new tools for discovery in biology and have accelerated the development of understanding in human disease.</p>

<p>Research Area: <br />Analysis of Next Generation sequence data in cancer<br />Methods for analysis of structural variation in cancer genomes<br />Next Generation sequencing in malaria<br />Computational comparative genomics<br />Sensitive genomic sequence search techniques using hidden Markov models<br />Tasmanian devil facial tumour disease</p>

<p>Link @ http://www.wehi.edu.au/faculty_members/dr_tony_papenfuss</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/869/bioinformatics-phd-studentship-available-in-new-zealand</guid>
  <pubDate>Sun, 14 Jul 2013 13:36:30 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics PhD studentship available in New Zealand]]></title>
  <description><![CDATA[
<p>Bioinformatics PhD studentship available in New Zealand</p>

<p>The importance of transcriptional control has been explored in a burgeoning line of research over several decades; nevertheless, we are still far from having a complete picture of the regulatory mechanisms of genes and non-coding RNAs, and their influences on different phenotypes and disease states of a cell. Recent shifts towards large-scale analyses of transcriptional regulation on a sequence and epigenetic level are at the forefront of research, mainly due to sequencing technology advancements and a deeper understanding of the fundamental regulatory processes involved.</p>

<p>Arriving at a better understanding of the influence of specific parts of the overall regulatory machinery on disease states is a high priority of the group’s research agenda.</p>

<p>We are seeking an enthusiastic student to join the group as a PhD student. Applicants must have a BSc(Hons) or MSc degree in a relevant discipline and a willingness to learn and apply new techniques and work in a team. Both local and international students are encouraged to apply.</p>

<p>The studentship covers all university fees and an annual tax-exempt stipend of NZ$22,000 for three years.</p>

<p>Sebastian Schmeier recently joined Massey University and started his own research group in Auckland, New Zealand, a city regularly ranked one of the most livable in the world. This is your chance to experience the amazing Auckland lifestyle and the excitement of joining a young new science team, while staying connected to world class scientific networks.</p>

<p>To apply for the post, please send a cover letter stating your interest in the position and why you think you would be a good candidate, a Curriculum Vitae, a copy of your academic transcript, a sample of your written scientific work, and the names of three referees. Applications will be accepted until the position is filled.</p>

<p>Enquiries and applications to Sebastian Schmeier (s.schmeier@massey.ac.nz).</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/923/phylogenetic-for-bioinformatics</guid>
	<pubDate>Tue, 16 Jul 2013 03:50:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/923/phylogenetic-for-bioinformatics</link>
	<title><![CDATA[Phylogenetic for Bioinformatics]]></title>
	<description><![CDATA[<p>Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data suggests that all organisms on Earth are genetically related, and the genealogical relationships of living things can be represented by a vast evolutionary tree, the Tree of Life. The Tree of Life then represents the phylogeny of organisms, i. e., the history of organismal lineages as they change through time.<br />Every living organism contains DNA, RNA, and proteins. Closely related organisms generally have a high degree of agreement in the molecular structure of these substances, while the molecules of organisms distantly related usually show a pattern of dissimilarity. Molecular phylogeny uses such data to build a "relationship tree" that shows the probable evolution of various organisms. Not until recent decades, however, has it been possible to isolate and identify these molecular structures.&nbsp;<br />phylogenetics is the study of evolutionary relatedness among various groups of organisms (for example, species or populations), which is discovered through molecular sequencing data and morphological data matrices. In other word, Phylogenetics, the science of phylogeny, is one part of the larger field of systematics, which also includes taxonomy. Taxonomy is the science of naming and classifying the diversity of organisms Molecular phylogeny is the use of the structure of molecules to gain information on an organism's evolutionary relationships. The result of a molecular phylogenetic analysis is expressed in a so-called phylogenetic tree.</p><p>The evolutionary connections between organisms are represented graphically through phylogenetic trees. Due to the fact that evolution takes place over long periods of time that cannot be observed directly, biologists must reconstruct phylogenies by inferring the evolutionary relationships among present-day organisms.&nbsp;<br />Application of the techniques that make this possible can be seen in the very limited field of human genetics, such as the ever more popular use of genetic testing to determine a child's paternity, as well as the emergence of a new branch of criminal forensics focused on genetic evidence.<br />The effect on traditional scientific classification schemes in the biological sciences has been dramatic as well. Work that was once immensely labor- and materials-intensive can now be done quickly and easily, leading to yet another source of information becoming available for systematic and taxonomic appraisal. This particular kind of data has become so popular that taxonomical schemes based solely on molecular data may be encountered. Proponents even claim that taxonomy was previously based on morphology alone, which of course is utter fable.<br /><br /><strong>For additional information on phylogenetics, see list of Phylogenetics Resources on the Internet.</strong></p><p>Phylogeny and Reconstructing Phylogenetic Trees:&nbsp;<a href="http://aleph0.clarku.edu/~djoyce/java/Phyltree/cover.html"></a><a href="http://aleph0.clarku.edu/~djoyce/java/Phyltree/cover.html">http://aleph0.clarku.edu/~djoyce/java/Phyltree/cover.html</a><br />the CBRG and Department of Statistics Phylogeny tutorial:&nbsp;<a href="http://www.compbio.ox.ac.uk/tutorials/phylogeny/"></a><a href="http://www.compbio.ox.ac.uk/tutorials/phylogeny/">http://www.compbio.ox.ac.uk/tutorials/phylogeny/</a><br />TUTORIAL: PHYLOGENETIC ANALYSIS USING PARSIMONY:<a href="http://home.cc.umanitoba.ca/~psgendb/GDE/phylogeny/parsimony/phylip.parsimony.html"></a><a href="http://home.cc.umanitoba.ca/~psgendb/GDE/phylogeny/parsimony/phylip.parsimony.html">http://home.cc.umanitoba.ca/~psgendb/GDE/phylogeny/parsimony/phylip.parsimony.html</a></p><p>PHYLIP:&nbsp;<a href="http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/main.html"></a><a href="http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/main.html">http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/main.html</a><br />An Introduction to Molecular Phylogeny:&nbsp;<a href="http://bibiserv.techfak.uni-bielefeld.de/gcb04/tutorials/hoef-emden/GCB04Tut.pdf"></a><a href="http://bibiserv.techfak.uni-bielefeld.de/gcb04/tutorials/hoef-emden/GCB04Tut.pdf">http://bibiserv.techfak.uni-bielefeld.de/gcb04/tutorials/hoef-emden/GCB04Tut.pdf</a></p><p>How to make a phylogenetic tree:&nbsp;<a href="http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/Tree"></a><a href="http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/Tree">http://www.hiv.lanl.gov/content/sequence/TUTORIALS/TREE_TUTORIAL/Tree</a>tutorial.html<br />Phylogenetic Trees:&nbsp;<a href="http://cnx.org/content/m11052/latest/"></a><a href="http://cnx.org/content/m11052/latest/">http://cnx.org/content/m11052/latest/</a><br />Phylogeny by Ron Shamir:&nbsp;<a href="http://www.cs.tau.ac.il/~rshamir/algmb/01/scribe08/lec08.pdf"></a><a href="http://www.cs.tau.ac.il/~rshamir/algmb/01/scribe08/lec08.pdf">http://www.cs.tau.ac.il/~rshamir/algmb/01/scribe08/lec08.pdf</a><br />Introduction to Phylogeny:&nbsp;<a href="http://www.utm.edu/departments/cens/biology/rirwin/391/391Phylog.htm"></a><a href="http://www.utm.edu/departments/cens/biology/rirwin/391/391Phylog.htm">http://www.utm.edu/departments/cens/biology/rirwin/391/391Phylog.htm</a><br />Lecturer notes on Phylogeny:&nbsp;<a href="http://www.sbc.su.se/~bens/course_material/phylocourse1/lecture2.pdf"></a><a href="http://www.sbc.su.se/~bens/course_material/phylocourse1/lecture2.pdf">http://www.sbc.su.se/~bens/course_material/phylocourse1/lecture2.pdf</a><br />Principles and Practice of Phylogenetic Systematics:<a href="http://www.faculty.biol.ttu.edu/Strauss/Phylogenetics/LectureNotes.htm"></a><a href="http://www.faculty.biol.ttu.edu/Strauss/Phylogenetics/LectureNotes.htm">http://www.faculty.biol.ttu.edu/Strauss/Phylogenetics/LectureNotes.htm</a></p><p>Inferring phylogenetic trees:&nbsp;<a href="http://www.cis.hut.fi/Opinnot/T-61.6070/slides2008/pres_6070.pdf"></a><a href="http://www.cis.hut.fi/Opinnot/T-61.6070/slides2008/pres_6070.pdf">http://www.cis.hut.fi/Opinnot/T-61.6070/slides2008/pres_6070.pdf</a></p><p><strong>Lecture Notes</strong></p><p>Chapter 1 - The Diversity, Classification, and Evolution of Vertebrates:<a href="http://academic.emporia.edu/mooredwi/nathist/chap1.htm"></a><a href="http://academic.emporia.edu/mooredwi/nathist/chap1.htm">http://academic.emporia.edu/mooredwi/nathist/chap1.htm</a></p><p>Algorithms for Phylogenetic Reconstructions:<a href="http://lectures.molgen.mpg.de/Algorithmische_Bioinformatik_WS0405/phylogeny_script.pdf"></a><a href="http://lectures.molgen.mpg.de/Algorithmische_Bioinformatik_WS0405/phylogeny_script.pdf">http://lectures.molgen.mpg.de/Algorithmische_Bioinformatik_WS0405/phylogeny_script.pdf</a></p><p>Phylogeny.fr is a free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences. Phylogeny.fr runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences. For more detail :&nbsp;<a href="http://www.phylogeny.fr/version2_cgi/index.cgi"></a><a href="http://www.phylogeny.fr/version2_cgi/index.cgi">http://www.phylogeny.fr/version2_cgi/index.cgi</a></p><p>A Brief Tutorial on Phylogenetics<br /><a href="http://bioss.ac.uk/~dirk/talks/tutorial_phylogenetics.pdf"></a><a href="http://bioss.ac.uk/~dirk/talks/tutorial_phylogenetics.pdf">http://bioss.ac.uk/~dirk/talks/tutorial_phylogenetics.pdf</a></p><p>A Brief Tutorial on Phylogenetics Human Rabbit Chicken<br /><a href="http://bioss.ac.uk/~dirk/talks/psnup_tutorial_phylogenetics.pdf"></a><a href="http://bioss.ac.uk/~dirk/talks/psnup_tutorial_phylogenetics.pdf">http://bioss.ac.uk/~dirk/talks/psnup_tutorial_phylogenetics.pdf</a></p><p>Phylogenetic Tree Computation Tutorial Overview<br /><a href="http://pga.lbl.gov/Workshop/April2002/lectures/Olken.pdf"></a><a href="http://pga.lbl.gov/Workshop/April2002/lectures/Olken.pdf">http://pga.lbl.gov/Workshop/April2002/lectures/Olken.pdf</a></p><p>MrBayes: A program for the Bayesian inference of phylogeny<br /><a href="http://golab.unl.edu/teaching/SBseminar/manual.pdf"></a><a href="http://golab.unl.edu/teaching/SBseminar/manual.pdf">http://golab.unl.edu/teaching/SBseminar/manual.pdf</a></p><p><strong>Web sites providing software for the construction of phylogenetic trees</strong></p><ul>
<li><a href="http://www.mbio.ncsu.edu/BioEdit/bioedit.html">BioEdit</a></li>
</ul><ul>
<li><a href="http://www.dinofish.com/">Coelocanth-Fish Out of Time</a></li>
</ul><ul>
<li><a href="http://cbrg.inf.ethz.ch/">Computational Biochemistry Research Group</a></li>
</ul><ul>
<li><a href="http://www.geocities.com/RainForest/Vines/8695/software.html">Digital Taxonomy</a></li>
</ul><ul>
<li><a href="http://www.cladistics.org/education/hennig86.html">Hennig 86</a></li>
</ul><ul>
<li><a href="http://www.bioinformaticssolutions.com/">Hyperclean</a>&nbsp;from Bioinformatics Solutions, Inc.</li>
</ul><ul>
<li><a href="http://www.mun.ca/biology/scarr/Directory.html">Memorial University of Newfoundland</a></li>
</ul><ul>
<li><a href="http://morphbank.ebc.uu.se/mrbayes/">Mr. Bayes</a></li>
</ul><ul>
<li><a href="http://www.cladistics.com/about_nona.htm">NONA</a></li>
</ul><ul>
<li><a href="http://evolve.zoo.ox.ac.uk/">Oxford University Evolutionary Biology Group</a></li>
</ul><ul>
<li><a href="http://flatpebble.nceas.ucsb.edu/public/">Paleobiology Database</a></li>
</ul><ul>
<li><a href="http://paup.csit.fsu.edu/index.html">PAUP</a></li>
</ul><ul>
<li><a href="http://evolution.genetics.washington.edu/phylip.html">Phylip Homepage</a></li>
</ul><ul>
<li><a href="http://research.amnh.org/scicomp/projects/poy.php">Poy</a></li>
</ul><ul>
<li><a href="http://www.sinauer.com/">Sinauer Associates</a></li>
</ul><ul>
<li><a href="http://www.cladistics.org/downloads/webtnt.html">TNT</a>-Tree Analysis Using New Technology</li>
</ul><ul>
<li><a href="http://www.treebase.org/treebase/index.html">Tree Base</a></li>
</ul><ul>
<li><a href="http://www.treefinder.de/">Treefinder</a></li>
</ul><ul>
<li><a href="http://www.tree-puzzle.de/">Tree-Puzzle</a></li>
</ul><ul>
<li><a href="http://taxonomy.zoology.gla.ac.uk/rod/treeview.html">Tree View</a>-Taxonomy and Systematics Group at Glasgow</li>
</ul><ul>
<li><a href="http://evolution.genetics.washington.edu/phylip/software.html">Washington University</a>-List of Phylogeny Software</li>
</ul>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/1469/prime-minister%E2%80%99s-100k-genome-project</guid>
	<pubDate>Thu, 08 Aug 2013 09:40:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/1469/prime-minister%E2%80%99s-100k-genome-project</link>
	<title><![CDATA[Prime Minister’s 100k Genome Project]]></title>
	<description><![CDATA[<p>Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England.&nbsp; A landmark project by british government.</p><p>Genomics England will play a key role in building on the UK&rsquo;s long track record as leader in medical science advances to push the boundaries by unlocking the power of DNA data. The UK will become the first ever country to introduce this technology in its mainstream health system &ndash; leading the global race for better tests, better drugs and above all better, more personalised care.</p><p>http://www.genomicsengland.co.uk/100k-genome-project/</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/2002/ibl-laboratory</guid>
  <pubDate>Mon, 12 Aug 2013 02:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[IBL laboratory]]></title>
  <description><![CDATA[
<p>The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative agents, heavy metals, or drastic changes in nutrients availability. The genome-wide responses studied with the "omics" techniques (transcriptomics, proteomics, metabolomics and genetics) generate a wealth of experimental data, which are processed, archived, integrated and represented as working models through bioinformatics and mathematics. </p>

<p>Link : http://www-dsv.cea.fr/en/instituts/institut-de-biologie-et-de-technologies-de-saclay-ibitec-s/unites-de-recherche/service-de-biologie-integrative-et-genetique-moleculaire-sbigem/laboratoire-de-biologie-integrative-lbi/presentation__1</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/2423/cancers-origins-revealed</guid>
	<pubDate>Thu, 15 Aug 2013 13:06:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/2423/cancers-origins-revealed</link>
	<title><![CDATA[Cancer's origins revealed]]></title>
	<description><![CDATA[<p>Researchers have provided the first comprehensive compendium of mutational processes that drive tumour development. Together, these mutational processes explain most mutations found in 30 of the most common cancer types. This new understanding of cancer development could help to treat and prevent a wide-range of cancers.<br /><br />More at &gt;&gt; http://www.sanger.ac.uk/about/press/2013/130814.html</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/3918/the-human-genome-project-video-3d-animation-introduction-low</guid>
	<pubDate>Sat, 24 Aug 2013 19:01:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/3918/the-human-genome-project-video-3d-animation-introduction-low</link>
	<title><![CDATA[The Human Genome Project Video   3D Animation Introduction Low)]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/YxoQFSBwyms" frameborder="0" allowfullscreen></iframe>]]></description>
	
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