<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/19732?offset=120 https://bioinformaticsonline.com/bookmarks/view/40832/biocoder-newsletter-of-that-revolution-it%E2%80%99s-about-biology-as-it-moves-from-research-labs-into-startup-incubators-hacker-spaces-and-even-homes Sun, 02 Feb 2020 07:43:52 -0600 https://bioinformaticsonline.com/bookmarks/view/40832/biocoder-newsletter-of-that-revolution-it%E2%80%99s-about-biology-as-it-moves-from-research-labs-into-startup-incubators-hacker-spaces-and-even-homes <![CDATA[BioCoder : newsletter of that revolution. It’s about biology as it moves from research labs into startup incubators, hacker spaces, and even homes]]>

BioCoder features:

  • Novel therapeutic discovery strategies
  • Hardware such as low-cost lab equipment or diagnostics
  • Open or low­-cost bioinformatics tools
  • Engineered organisms for the production of small molecules, biologics, or other products
  • Research projects at a community labspace or projects for science education or public engagement
  • Hardware or software for lab automation
  • Citizen science or DIY research projects
  • Science policy
  • Tools to increase reproducibility in research, or anything related

Address of the bookmark: https://www.oreilly.com/biocoder/

]]> Jit https://bioinformaticsonline.com/news/view/42023/encode3-a-collection-of-research-articles-and-related-content-describing-the-encyclopedia-of-dna-elements-its-datasets-and-tools Sat, 08 Aug 2020 08:25:21 -0500 https://bioinformaticsonline.com/news/view/42023/encode3-a-collection-of-research-articles-and-related-content-describing-the-encyclopedia-of-dna-elements-its-datasets-and-tools <![CDATA[ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.]]> How cells, tissues and organisms interpret the information encoded in the genome has vital implications for our understanding of development, health and disease. Launched in 2003, the ENCyclopedia Of DNA Elements (ENCODE) project has the aim of mapping the functional elements in the human genome (later expanded to include model organisms).

During the first phase of ENCODE, published in 2007, microarray-based technologies were used to detect regions associated with transcription factors, certain histone modifications and open chromatin within a pre-specified 1% of the human genome.

ENCODE’s second phase saw a switch to sequencing-based technologies, the addition of new assay types and the analysis of functional elements genome-wide, described in a collection of research articles in 2012.

The Encyclopedia paper of ENCODE 3, published in Nature, gives an overview of the various assays that were performed in human and mouse cell lines and tissues and describes a Registry of human and mouse candidate cis-regulatory elements (cCREs).

More at https://www.nature.com/immersive/d42859-020-00027-2/index.html

]]> Shruti Paniwala https://bioinformaticsonline.com/researchlabs/view/44400/pevzner-lab Thu, 02 Nov 2023 05:39:26 -0500 <![CDATA[Pevzner Lab !]]> The laboratory works on genome sequencing, immunoproteogenomics, antibiotics sequencing, and comparative genomics - computational technologies that enabled new applications and allowed scientists to attack biological problems that remained beyond the reach of previous techniques.

https://bioalgorithms.ucsd.edu/research4.html

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