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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/19786?offset=920</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4352/jrf-bharathidasan-university</guid>
  <pubDate>Sat, 07 Sep 2013 14:20:03 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF @ BHARATHIDASAN UNIVERSITY]]></title>
  <description><![CDATA[
<p>Department of Bioinformatics<br />School of Life Sciences<br />BHARATHIDASAN UNIVERSITY,<br />TIRUCHIRAPPALLI-620 024</p>

<p>WALK-IN-INTERVIEW FOR JUNIOR RESEARCH FELLOWSHIP</p>

<p>Project title: Structural and Functional Evolution of Bacterial ADP-ribosylation Superfamily–A Special Emphasis for Engineering Immunotoxins from Binary toxin A Funding Agency: Life Science Research Board, Defence Research and Development Organization, New Delhi</p>

<p>Tenure of the project: Three years or till the end of the project period.</p>

<p>Position: Junior Research Fellow (1 no.)</p>

<p>Essential qualification: First class in M.Sc. in Genomics/Biotechnology/ Microbiology/ Biochemistry/Life Sciences</p>

<p>Desirable qualification: Experience in an area relevant (Molecular Microbiology, Protein engineering and Structural Bioinformatics) to the project.</p>

<p>Fellowship: Rs. 16, 000 per month plus HRA as per University rule.</p>

<p>Upper age limit: 28 years</p>

<p>Date of interview: 16-09-2013</p>

<p>Venue of interview: Department of Bioinformatics, Bharathidasan University, Tiruchirappalli -620 024, Tamil Nadu</p>

<p>The above post is purely temporary and will be terminated with three month notice. The Terms and the condition of the appointment shall be governed according to DRDO, Govt. of India. The eligible candidates will bring their original certificates and documents at the time of interview. No TA/DA will be paid for attending the interview.</p>

<p>Dr. P. CHELLAPANDI<br />Principal Investigator,<br />Department of Bioinformatics,<br />Bharathidasan University,<br />Tiruchirappalli -620 024, Tamil Nadu</p>

<p>Advertisement: http://www.bdu.ac.in/tender_list.php</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42670/icgeb-bioinformatics-job</guid>
  <pubDate>Sat, 23 Jan 2021 21:01:55 -0600</pubDate>
  <link></link>
  <title><![CDATA[ICGEB Bioinformatics Job]]></title>
  <description><![CDATA[
<p>The following vacancies are available in the various ongoing bioinformatics projects at.<br />Translational Bioinformatics Group (https://www.icgeb.org/dinesh-gupta/), ICGEB, New Delhi, India. Shortlisted candidates will be welcomed for an on-line interview at ICGEB. Only the chosen applicants will be informed individually. Preference will be given to the applicants with experience related to Bioinformatics as well as Computational area.</p>

<p>Interested applicants must submit their complete, updated Curriculum Vitae, mentioning details of two references as well as various other details at – http://14.139.62.220/survey/index.php/2021/01/21/icgeb-dbt-project-vacancy/</p>

<p>The last date of submission of applications is January 31st, 2021.</p>

<p>Research Associate : PhD. Degree in Computational Biology/Bioinformatics.</p>

<p>Consolidated Salary: 58280/- pm (including HRA).</p>

<p>More at https://www.icgeb.org/project-positions-translational-bioinformatics-group/ and https://www.icgeb.org/category/vacancies/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/4482/bioinformatics-definitions-and-applications</guid>
	<pubDate>Thu, 12 Sep 2013 15:04:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/4482/bioinformatics-definitions-and-applications</link>
	<title><![CDATA[Bioinformatics definitions and applications !!!]]></title>
	<description><![CDATA[<p>There have been long discussion amongst several specialized/expert educator regarding bioinformatics arena, but everyone explain bioinformatics with their own view. I tried to explain it with a cartoon. Hope you all will like it.</p>]]></description>
	<dc:creator>Jit</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/4482" length="49464" type="image/gif" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/42810/bioinformatics-in-africa-part3-mali</guid>
	<pubDate>Sat, 06 Feb 2021 13:28:44 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/42810/bioinformatics-in-africa-part3-mali</link>
	<title><![CDATA[Bioinformatics in Africa: Part3 - Mali]]></title>
	<description><![CDATA[<p>International&nbsp;Center&nbsp;for&nbsp;Excellence&nbsp;in&nbsp;Research&nbsp;(ICER):</p><p>The&nbsp;ICER&nbsp;is&nbsp;a&nbsp;research&nbsp;center&nbsp;composed&nbsp;of&nbsp;the&nbsp;following&nbsp;three&nbsp;programs: 1. The&nbsp;Malaria&nbsp;Research&nbsp;and&nbsp;Training&nbsp;Center&nbsp;&shy;&nbsp;Parasitology&nbsp;Group,&nbsp; 2. The&nbsp;Malaria&nbsp;Research&nbsp;and&nbsp;Training&nbsp;Center&nbsp;&shy;&nbsp;Entomology&nbsp;Group&nbsp; 3. The&nbsp;SEREFO&nbsp;Group.</p><p>The&nbsp;first&nbsp;two&nbsp;programs&nbsp;develop&nbsp;biomedical&nbsp;researches&nbsp;in&nbsp;malaria,&nbsp;Filariasis&nbsp;and&nbsp;Leishmaniasis.&nbsp;The&nbsp; third&nbsp;program&nbsp;develops&nbsp;biomedical&nbsp;researches&nbsp;in&nbsp;tuberculosis&nbsp;and&nbsp;HIV.</p><p>Bioinformatics&nbsp;was&nbsp;introduced&nbsp;recently&nbsp;to&nbsp;the&nbsp;ICER&nbsp;and&nbsp;is&nbsp;constantly&nbsp;growing.&nbsp;The&nbsp;ICER&nbsp;has&nbsp;one&nbsp; team,&nbsp;headed&nbsp;by&nbsp;Sidy&nbsp;SOUMARE,&nbsp;which&nbsp;supports&nbsp;the&nbsp;three&nbsp;programmes&nbsp;in&nbsp;all&nbsp;their&nbsp;needs&nbsp;in&nbsp; informatics&nbsp;and&nbsp;bioinformatics.&nbsp;This&nbsp;team&nbsp;can&nbsp;beneficiate&nbsp;from&nbsp;some&nbsp;computational&nbsp;facilities&nbsp;(4&nbsp; blast&nbsp;servers,&nbsp;15&nbsp;other&nbsp;servers&nbsp;and&nbsp;around&nbsp;200&nbsp;terminals),&nbsp;but&nbsp;the&nbsp;ICER&nbsp;staff&nbsp;needs&nbsp;some&nbsp;training&nbsp;in&nbsp; order&nbsp;to&nbsp;be&nbsp;able&nbsp;to&nbsp;administrate&nbsp;these&nbsp;facilities.</p><p>Research&nbsp;Interest&nbsp;and&nbsp;Activities: The&nbsp;following&nbsp;are&nbsp;the&nbsp;present&nbsp;areas&nbsp;of&nbsp;research&nbsp;interest: 1. Functional&nbsp;genomics 2. Analysis&nbsp;of&nbsp;microarray&nbsp;data 3. Interaction&nbsp;between&nbsp;the&nbsp;vector&nbsp;and&nbsp;the&nbsp;parasite.</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4575/hiv-phd-and-msc-research-positions</guid>
  <pubDate>Mon, 16 Sep 2013 18:55:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[HIV PhD and MSc Research Positions]]></title>
  <description><![CDATA[
<p>SANBI are looking to recruit two MSc students and a PhD student who are interested in implementing a computational biology approach to explore HIV’s glycan shield. Successful candidates for the MSc should hold an honours degree in physics, computer science or biological sciences while PhD applicants should hold an honours degree and a MSc in one or more of physics, computer science or biological sciences.</p>

<p>As these positions are funded by the South African National Research Foundation (NRF) priority will be given to South African citizens and permanent residents however exceptional applicants who do not fulfil these criteria may be considered.</p>

<p>Applications including a CV outlining your experience together with a cover letter detailing why you are a suitable candidate should be sent to simon_at_sanbi.ac.za by 30th September 2013.</p>

<p>More @ http://www.sanbi.ac.za/hiv-phd-and-msc-research-positions/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42907/lecturer-in-evolutionary-biology-bioinformatics-at-department-of-zoology-te-tari-matai-kararehe-division-of-sciences-te-rohe-a-ahikaroa</guid>
  <pubDate>Tue, 23 Feb 2021 02:05:15 -0600</pubDate>
  <link></link>
  <title><![CDATA[Lecturer in Evolutionary Biology (Bioinformatics) at DEPARTMENT of ZOOLOGY | TE TARI MĀTAI KARAREHE DIVISION of SCIENCES | TE ROHE A AHIKAROA]]></title>
  <description><![CDATA[
<p>DEPARTMENT of ZOOLOGY | TE TARI MĀTAI KARAREHE<br />DIVISION of SCIENCES | TE ROHE A AHIKAROA</p>

<p>Applications are invited for the position of Lecturer in Evolutionary Biology (Bioinformatics).</p>

<p>We are seeking a person with a relevant doctorate, and demonstrated potential to develop as an outstanding researcher and teacher in evolutionary bioinformatics in the Department of Zoology. The position affords an exciting opportunity for an emerging scholar to research and teach in a vibrant and diverse Department. The successful candidate will develop a transformative and collaborative research program, supporting the university's commitment to excellence in research.</p>

<p>Your skills and experience</p>

<p>A PhD with a background in analysis of high-throughput sequencing data and evolutionary biology.<br />Knowledge of and familiarity with a range of bioinformatics skills, concepts, and practices as they relate to the biology of animals, including genomic, transcriptomic and metabarcoding data analyses.<br />A strong interest, and experience, in research and teaching of bioinformatics and evolutionary genomics.<br />An ability to contribute to teaching and learning environments that support engagement of students and staff with bioinformatics and genomics.<br />Be committed to and or have established connections or track record of working with national and local bioinformaticians. <br />Be committed to being a productive collaborator with a track record of working collegially.<br />Further details</p>

<p>This is a confirmation-path (tenure track) position at the level of Lecturer. The successful candidate is expected to take up duties by 1 July 2021.</p>

<p>To see a full job description and to apply online go to: https://otago.taleo.net/careersection/2/jobdetail.ftl?job=2100342</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43993/phd-positions-on-integrative-omics-and-phylogenomics</guid>
  <pubDate>Wed, 19 Oct 2022 05:11:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD positions on integrative omics and phylogenomics]]></title>
  <description><![CDATA[
<p>Would you like to participate in an exciting interdisciplinary research project to discover the hidden chemistry of plants and its evolution using computational omics approaches? Do you enjoy collaboration and teamwork while being at the cutting edge of scientific progress? We are looking for two PhD candidates with complementary skills to pioneer new technologies to analyze, explore and leverage the diversity of plant chemistry hidden in plant genomes.</p>

<p>Plants represent an untapped resource of natural bioactive compounds that significantly contribute to plant resilience to pathogens, herbivores, and abiotic stresses, and may be applied for medicine or crop protection. In this project, you will design and/or apply innovative omics integration strategies for genomics, transcriptomics, and metabolomics data, to discover plant specialized metabolite biosynthetic pathways and study their evolution. You will work together with the other PhD candidate in this project, which will entail a combination of algorithm development, greenhouse experiments, integrative omics analysis, and evolutionary genomics. Extensive local and international collaboration is foreseen, including possibilities for a foreign research visit as part of your PhD project.</p>

<p>The research is embedded within the chairs of Bioinformatics and Biosystematics. The projects will be (co-)supervised by Dr. Marnix Medema, Dr. Justin van der Hooft, Dr. Klaas Bouwmeester and Prof. Dr. Eric Schranz.</p>

<p>We ask</p>

<p>We are looking for two enthusiastic and complementary team players with all or a subset of the following skills:</p>

<p>a solid academic record (MSc) in bioinformatics, biology, or biotechnology<br />experience in computational omics analysis and proficiency in programming (in, e.g., Python)<br />at least basic to intermediate statistical and mathematical skills<br />demonstrable experience in working with next-generation sequencing data or with greenhouse experiments with plants<br />affinity with plant science, metabolism and/or biosynthetic pathways<br />you meet all the entry requirements of the  WUR PhD programme.<br />More information</p>

<p>For more information about this position, please contact Marnix Medema, Associate Professor Bioinformatics, by email (marnix.medema@wur.nl).<br />For more information about the procedure, please contact vacaturemeldingen.psg@wur.nl.</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4946/crcri-bioinfomatics-walk-in-on-08102013</guid>
  <pubDate>Fri, 27 Sep 2013 10:59:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[CRCRI Bioinfomatics Walk In on 08.10.2013]]></title>
  <description><![CDATA[
<p>Walk-in-Interview for recruitment of one Project Fellow for a period of 10 months purely on temporary basis is proposed to be held at Central Tuber Crops Research Institute, Sreekariyam, Thiruvananthapuram for a KSCSTE funded project entitled “PARTICIPATORY DEVELOPMENT OF A WEB BASED USER FRIENDLY CASSAVA EXPERT SYSTEM”</p>

<p>Salary: Rs. 10,000/- per month.</p>

<p>Age limit: 35 for men and 40 for women &amp; SC/ST.</p>

<p>Qualification: First class in M. Sc (Agriculture)/MCA/M.Sc (IT)/ M. Sc (Computer Application)/M.Sc (Bioinformatics)/M.Sc (Geoinformatics).</p>

<p>Desirable: Two years experience in web design and web programming.</p>

<p>Date &amp; time of interview: 08.10.2013, 10 am</p>

<p>Interested candidates may appear for an interview at this institute along with their application in plain paper containing the following particulars viz. (1) Name (2) Father/Husband/Guardian’s Name (3) date of birth &amp; age as on 01.10.2013 (4) Permanent address (5) Address for communication (6) Email address and Telephone No. with code (7) Qualification (8) National fellowship like ICAR/CSIR/UGC etc. if any (9) Whether SC/ST/OBC (10) Details of experience (Attested copies of degree certificate, proof of age, mark sheets). Original certificates should be produced for verification.</p>

<p>No TA/DA will be admissible to the candidates attending the test. The selected candidate will have to join immediately.</p>

<p>Advertisement: http://www.ctcri.org/careers/mithra_SRF.doc</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44254/bioinformatics-chat</guid>
	<pubDate>Mon, 13 Mar 2023 13:20:27 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44254/bioinformatics-chat</link>
	<title><![CDATA[Bioinformatics Chat !]]></title>
	<description><![CDATA[<p>The bioinformatics chat is a podcast about computational biology, bioinformatics, and next generation sequencing.</p>
<p>The bioinformatics chat is produced by&nbsp;<a href="https://ro-che.info/">Roman&nbsp;Cheplyaka</a>&nbsp;and hosted by Roman and&nbsp;<a href="https://jmschrei.github.io/">Jacob&nbsp;Schreiber</a>.</p><p>Address of the bookmark: <a href="https://bioinformatics.chat/" rel="nofollow">https://bioinformatics.chat/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/44618/important-bioinformatics-tools</guid>
	<pubDate>Tue, 30 Jul 2024 05:03:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/44618/important-bioinformatics-tools</link>
	<title><![CDATA[Important Bioinformatics Tools !]]></title>
	<description><![CDATA[<p><span>1. Ktrim: An extra-fast, accurate adapter trimmer for sequencing data. It processes FASTQ files from multiple lanes with minimal mismatching and over-trimming of adapters.</span><span><br /></span><span><br /></span><span>2. BWA MEM: A reliable alignment tool (particularly for mapping ALT contigs and HLA genes, which are not fully addressed in BWA-MEM2).</span><span><br /></span><span><br /></span><span>3. Sambamba markdup: Quickly marks or removes duplicate reads using Picard's criteria.</span><span><br /></span><span><br /></span><span>4. ichorCNA: Estimates the tumor DNA fraction in cell-free DNA from ultra-low-pass whole genome sequencing (0.1x coverage) based on copy number alterations (CNA).</span><span><br /></span><span><br /></span><span>5. Fragle: A deep learning method for quantifying ctDNA levels from cell-free DNA fragmentomic profiles. It detects TF as low as ~1% ctDNA and works with targeted genomic panel sequencing data.</span><span><br /></span><span><br /></span><span>6. AlfredQC: A quality control tool for high-throughput sequencing data. It assesses metrics like read quality scores, GC content, and duplication rates, visualized through detailed plots and summary statistics.</span><span><br /></span><span><br /></span><span>7. Mosdepth: A fast tool for calculating sequencing coverage depth, offering a quicker alternative to samtools/sambamba depth by processing BAM and CRAM files.</span><span><br /></span><span><br /></span><span>8. Bedtools: A versatile toolkit for genomics, enabling operations like intersect, merge, count, and shuffle on genomic intervals across formats such as BAM, BED, GFF/GTF, and VCF.</span><span><br /></span><span><br /></span><span>9. Datamash: A command-line tool for basic numeric, textual, and statistical operations on input data streams. It supports operations such as grouping, sorting, transposing, and performing arithmetic calculations on tabular data.</span><span><br /></span><span><br /></span><span>10.</span><span> </span><a href="http://gwf.app/" target="_self">gwf.app</a><span>: A pragmatic alternative to Snakemake. Developed at</span><span> </span><a href="https://www.linkedin.com/company/aarhus-university-denmark-/" target="_self"><span>Aarhus University</span></a><span>, this flexible, generic workflow tool builds and runs large scientific workflows.</span></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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