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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/19992?offset=250</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19820/rstudio</guid>
	<pubDate>Sat, 27 Dec 2014 06:50:58 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19820/rstudio</link>
	<title><![CDATA[RStudio]]></title>
	<description><![CDATA[<p>RStudio IDE is a powerful and productive user interface for R. It&rsquo;s free and open source, and works great on Windows, Mac, and Linux.</p>
<p>The developers and expert trainers are the authors of several popular R packages, including ggplot2, plyr, lubridate, and others.</p>
<p>More at http://www.rstudio.com/</p>
<p>http://www.rstudio.com/products/RStudio/</p><p>Address of the bookmark: <a href="http://www.rstudio.com/" rel="nofollow">http://www.rstudio.com/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/20448/jrf-in-bioinformatics-nehu</guid>
  <pubDate>Tue, 20 Jan 2015 22:57:49 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ NEHU]]></title>
  <description><![CDATA[
<p>Department of Botany &amp; Bioinformatics Centre<br />NORTH-EASTERN HILL UNIVERSITY, SHILLONG 793022</p>

<p>Applications with complete bio-data from candidates possessing the required qualifications are invited for the posts of JRF (2) and Project Assistant (1) in</p>

<p>DBT, GOI-funded research project “Next Generation Sequencing (NGS)- based de novo assembly of expressed transcripts and genome information of Orchids in North-East India” in DBT’s Twinning programme for NE as per DBT sanction order and norms.</p>

<p>(i) JRF(2 nos.):</p>

<p>Qualifications: M.Tech/M.Sc in Life Sciences/ Botany/ Zoology/Biochemistry/ Biotechnology/ Bioinformatics; Desirable: Aptitude for Bioinformatics and Computer Programming/ Next generation sequencing data analysis</p>

<p>(ii) Project Assistant (1 no.):</p>

<p>Qualifications: Graduation in Science, Desirable: Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples.</p>

<p>The applications through email bicnehu@gmail.com or post must reach the undersigned<br />within 15 days from the date of publication of this advertisement. The advertised posts are purely temporary for the duration of the project and subject to availability of the funds from DBT. The appointment does not confer any entitlement or right over the posts for absorption in the University service.</p>

<p>Advertisement: www.nehu.ac.in/Advertisements/BICAdvtPV_200115.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/20362/20th-international-bioinformatics-workshop-on-virus-evolution-and-molecular-epidemiology-veme</guid>
  <pubDate>Mon, 12 Jan 2015 01:39:45 -0600</pubDate>
  <link></link>
  <title><![CDATA[20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME)]]></title>
  <description><![CDATA[
<p>20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME)<br />9 - 14 August 2015 St. Augustine, Trinidad and Tobago </p>

<p>Organiser: Christine Carrington (University of the West Indies - UWI, St. Augustine, Trinidad and Tobago)<br />Co-organisers: Anne-Mieke Vandamme, Philippe Lemey (Katholieke Universiteit Leuven, Belgium), Marco Salemi, Mattia Prosperi (University of Florida, Gainesville, USA) and Karen E. Nelson (J. Craig Venter Institute, Rockville, USA)</p>

<p>Requests for information directly to:<br />Christine Carrington<br />Department of Preclinical Sciences<br />Faculty of Medical Sciences<br />University of the West Indies (UWI)<br />St. Augustine<br />Trinidad and Tobago<br />Telephone: +1-868-6452640 ext. 5009, +1-868-6848803<br />Fax: +1-868-6621873<br />E-mail: veme2015@sta.uwi.edu</p>

<p>Deadline for receipt of applications by local organiser: 15 March 2015<br />CALL FOR APPLICATIONS NOW OPEN<br />http://www.icgeb.org/course-application-trinidad-and-tobago-2015.html</p>

<p>http://rega.kuleuven.be/cev/veme-workshop/2015</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/20437/wuxi-has-acquired-nextcode-health</guid>
	<pubDate>Mon, 19 Jan 2015 08:17:35 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/20437/wuxi-has-acquired-nextcode-health</link>
	<title><![CDATA[WuXi has acquired NextCODE Health]]></title>
	<description><![CDATA[<p>Shanghai, China-headquartered pharmatech company WuXi (NYSE: WX) has acquired NextCODE Health, a genomic analysis and bioinformatics company based in the USA.<br /><br />The acquisition was made for $65 million in cash, and WuXi plans to merge its genome center with NextCODE Health to form a new company, WuXi NextCODE Genomics. The business will be headquartered in Shanghai and have operations in Cambridge, Massachusetts, and Reykjavik, Iceland.<br /><br />With the huge unmet medical needs in diseases with a genetic component and the rapid advances in genomics and bioinformatics, now is the right time for WuXi to make a strategic investment in this field, and NextCODE is the right partner. This new venture of WuXi NextCODE Genomics will create important new genomic and bioinformatic products and services to help make personalized treatment and medicine a reality.&nbsp; It will also enable doctors to provide better treatments to patients.<br /><br /></p>]]></description>
	<dc:creator>Pranjali Yadav</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/20677/postdoctoral-researcher-at-department-of-biotechnology-catholic-university-of-daegu-kyungsan-kyungbuk-south-korea</guid>
  <pubDate>Thu, 29 Jan 2015 12:11:16 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Researcher at Department of Biotechnology, Catholic University of Daegu, Kyungsan, Kyungbuk, South Korea.]]></title>
  <description><![CDATA[
<p>Applications are invited from Indian nationals for a Post Doctoral position at Molecular Medical Laboratory, Department of Biotechnology, Catholic University of Daegu, Kyungsan, Kyungbuk, South Korea.</p>

<p>Qualification required: PhD in Life Sciences/ Molecular Biology/ Bioinformatics or related discipline.</p>

<p>Desirable Qualification:</p>

<p>1. Candidates having experience in molecular biology techniques and must be well versed with bioinformatics tool or expert in relevant fields will be preferred.<br />2. The candidate should have good communication skill, knowledge about designing experiments and analyzing data.<br />3. Sense of initiative, autonomy, organization and thoroughness, good relation qualities.<br />Remuneration: 2000USD per month.</p>

<p>Last date of submitting the complete applications furnishing Bio-data is 10th February, 2015.</p>

<p>Interested candidates should send their resume including all personal as well as academic details to the principal investigator Prof Seung-Won Park (email:microsw@cu.ac.kr)</p>

<p>The shortlisted candidates will be intimated within February 2015.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/21241/pacman</guid>
	<pubDate>Mon, 16 Feb 2015 12:15:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/21241/pacman</link>
	<title><![CDATA[Pacman]]></title>
	<description><![CDATA[<p><span>The pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions. This package is ideally added to .Rprofile to increase workflow by reducing time recalling obscurely named functions, reducing code and integrating functionality of base functions to simultaneously perform multiple actions.<br /><br />Function names in the pacman package follow the format of p_xxx where &lsquo;xxx&rsquo; is the task the function performs. For instance the p_load function allows the user to load one or more packages as a more generic substitute for the library or require functions and if the package isn&rsquo;t available locally it will install it for you.<br /><br /></span></p><p><strong>Installation</strong></p><p><span>To download the development version of pacman:</span></p><p><span>Download the </span><a href="https://github.com/trinker/pacman/zipball/master">zip ball</a><span> or </span><a href="https://github.com/trinker/pacman/tarball/master">tar ball</a><span>, decompress and run </span><code>R CMD INSTALL</code><span> on it, or use th</span><span>e </span><strong>devtools</strong><span> package to install the development version:</span></p><pre title="">## Make sure your current packages are up to date
update.packages()
## devtools is required
devtools::install_github("trinker/pacman")
</pre><p>Note: Windows users need <a href="http://www.murdoch-sutherland.com/Rtools/">Rtools</a> and <a href="http://CRAN.R-project.org/package=devtools">devtools</a> to install this way.</p><p>More at https://github.com/trinker/pacman</p><p>&nbsp;</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21893/postdoctoral-fellowship-in-bioinformatics-and-evolutionary-genomics</guid>
  <pubDate>Wed, 01 Apr 2015 21:36:42 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics<br />Organization<br />National Human Genome Research Institute, National Institutes of Health<br />http://genome.gov/Staff/Baxevanis<br />Job Location<br />Bethesda, MD<br />Job Description</p>

<p>A postdoctoral training position is currently available in the Computational and Statistical Genomics Branch (CSGB) of the National Human Genome Research Institute (NHGRI). The position is located in the laboratory of Andy Baxevanis, Ph.D., whose research group uses comparative genomics approaches to better-understand the molecular innovations that drove the surge of diversity in early animal evolution. The overarching theme of Dr. Baxevanis’ research program is focused on how non-traditional animal models convey critical insights into human disease research.</p>

<p>Candidates should have or be close to obtaining a Ph.D. or equivalent degree in bioinformatics, computational biology, computer science, molecular biology, or a closely related field. Candidates with a background in evolutionary biology are particularly encouraged to apply. Programming skills and experience in the application of computational methods to genomic data are highly desirable. Applicants must possess good communication skills and be fluent in both spoken and written English. The ability to learn how to use new software and quickly become expert in its use, critical thinking, problem-solving abilities, and the ability to work semi-independently are required.<br />How to Apply</p>

<p>Interested applicants should submit a curriculum vitae, a detailed letter of interest, and the names of three potential referees to Dr. Baxevanis at andy@mail.nih.gov.<br />About Our Organization</p>

<p>The NIH Intramural Research Program is on the Bethesda, Maryland campus and offers a wide array of training opportunities for scientists early in their careers. The funding for this position is stable and offers the trainee wide latitude in the design and pursuit of their research project. The successful candidate will have access to NHGRI’s established and robust bioinformatics infrastructure, as well as resources made available through NIH’s Center for Information Technology (CIT) and the National Center for Biotechnology Information (NCBI).</p>

<p>For more information on CSGB and NHGRI’s Intramural Research Program, please see http://genome.gov/DIR/.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/22769/ensembl-27</guid>
	<pubDate>Tue, 16 Jun 2015 16:10:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/22769/ensembl-27</link>
	<title><![CDATA[Ensembl 27]]></title>
	<description><![CDATA[<h3>What is new?</h3><ul>
<li>Expansion of Protists and Fungi with hundreds of annotated genomes</li>
<li>Variation data for bread wheat, rice, <em>Aedes aegypti</em>, and <em>Ixodes scapularis</em></li>
<li>Whole genome alignments for <em>O. longistaminata</em> and <em>T. cacao</em></li>
<li>Non-coding RNA gene models in <a href="http://bacteria.ensembl.org">Bacteria</a></li>
<li>New assembly of tomato (version 2.50)</li>
<li>Full support for UCSC Track Hub format for hosting your own data in Ensembl</li>
</ul><p>More at http://www.ensembl.info/blog/2015/06/16/ensembl-genomes-release-27-is-out/</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/23149/raphael-lab</guid>
  <pubDate>Sat, 04 Jul 2015 19:05:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Raphael Lab]]></title>
  <description><![CDATA[
<p>Raphael Lab research is focused on Bioinformatics and Computational Biology.</p>

<p>Current research interests include next-generation DNA sequencing, structural variation, genome rearrangements in cancer and evolution, and network analysis of somatic mutations in cancer. Earlier research included topics in comparative genomics, multiple sequence alignment, and motif finding.</p>

<p>More athttp://compbio.cs.brown.edu/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/23633/biorg</guid>
  <pubDate>Tue, 04 Aug 2015 20:52:52 -0500</pubDate>
  <link></link>
  <title><![CDATA[BioRG]]></title>
  <description><![CDATA[
<p>This research group works on problems from the fields of Bioinformatics, Biotechnology, Data Mining, and Information Retrieval. The group's research projects includes Comparative Genomics of Bacterial genomes, Metagenomics, Genomic databases, Pattern Discovery in sequences and structures, micro-array data analysis, prediction of regulatory elements, primer design, probe design, phylogenetic analysis, medical image processing, image analysis, data integration, data mining, information retrieval, knowledge discovery in electronic medical records, and more. </p>

<p>More at http://biorg.cis.fiu.edu/</p>
]]></description>
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