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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/20015?offset=1120</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42552/bioinformatics-workbook</guid>
	<pubDate>Tue, 05 Jan 2021 22:42:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42552/bioinformatics-workbook</link>
	<title><![CDATA[bioinformatics workbook]]></title>
	<description><![CDATA[<p><span>This books assumes that the reader has some knowledge of biology and basic understanding of the Unix command line. However, for the beginner, the appendix contains introductory material and tips/tricks for common bioinformatic problems, that is referred to for more information throughout the book.</span></p>
<p>https://bioinformaticsworkbook.org/</p><p>Address of the bookmark: <a href="https://bioinformaticsworkbook.org/" rel="nofollow">https://bioinformaticsworkbook.org/</a></p>]]></description>
	<dc:creator>biogeek</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43042/bioinformatics-in-thailand</guid>
	<pubDate>Wed, 28 Apr 2021 02:04:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43042/bioinformatics-in-thailand</link>
	<title><![CDATA[Bioinformatics in Thailand !]]></title>
	<description><![CDATA[<p>Our international PhD and master programs are designed for students who desire focused training in the elements of biology, computer science, and information technology needed for a successful career in the exciting new discipline of Bioinformatics &amp; Systems Biology. Students in our program will receive comprehensive training in omics analysis, database design and management, software engineering and programming (including web-based development), simulation techniques and modeling, and data integration. Each student will apply their skills to a practical project, where they will design and implement a solution to a real-world problem under the guidance of an experienced mentor in industry or academia.</p>
<p><strong>https://bioinformatics.kmutt.ac.th/about.html</strong></p>
<p>Duangrudee Tanramluk (Ajarn Wi) uses computational biology and machine learning to tackle the key to drug design problems via MANORAA webserver.</p>
<p><strong>https://mb.mahidol.ac.th/en/bioinformatics/</strong></p>
<p><strong>https://graduate.mahidol.ac.th/inter/</strong></p>
<p>This&nbsp;international&nbsp;Doctorate programme is designed to further broaden students&rsquo; knowledge in Bioinformatics and Molecular Biology to their maximum capability.&nbsp;</p>
<p><strong>http://www.mbb.psu.ac.th/programmes/phd</strong></p>
<p>Ph.D. program in Bioinformatics and Computational Biology is a joint effort of the Faculty of Science and Faculty of Medicine, Chulalongkorn University. The program has study plans for both applicants who hold a bachelor&rsquo;s degree and applicants who hold a master&rsquo;s degree in any related fields of study.</p>
<p><strong>http://www.bioinfo.sc.chula.ac.th/ph-d-program-specialization/</strong></p>
<p>Additional detail&nbsp;</p>
<p><strong>https://www.biotec.or.th/en/index.php/research/research-units/genome-technology-research-unit</strong></p>
<p><strong>https://tbrcnetwork.org/labtbrc/index.php/bioinformatics-and-chemoinformatics/</strong></p>
<p><strong>https://genomicsthailand.com/Genomic/home</strong></p><p>Address of the bookmark: <a href="https://bioinformatics.kmutt.ac.th/" rel="nofollow">https://bioinformatics.kmutt.ac.th/</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43284/tech-and-bioinformatics-roles-at-basepaws</guid>
  <pubDate>Wed, 18 Aug 2021 23:34:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[Tech and Bioinformatics roles at Basepaws]]></title>
  <description><![CDATA[
<p>Basepaws is an LA-based pet genomics company, quickly growing and focused on feline and canine at-home genetic and biome tests, along with many other projects and products in the works. Thank you for taking a look!</p>

<p>Bioinformatics : https://www.linkedin.com/jobs/view/2681785372/</p>

<p>Engineer: https://www.linkedin.com/jobs/view/2681796993/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/44352/bioinformatics-tools-for-genome-assembly</guid>
	<pubDate>Mon, 24 Jul 2023 07:04:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/44352/bioinformatics-tools-for-genome-assembly</link>
	<title><![CDATA[Bioinformatics tools for genome assembly !]]></title>
	<description><![CDATA[<p>There are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a list of some widely used genome assembly tools as of my last update in September 2021:</p><ol>
<li>
<p><span>SPAdes:</span> An assembler specifically designed for single-cell and multi-cell bacterial genomes, as well as small eukaryotic genomes.</p>
</li>
<li>
<p><span>ABySS:</span> A parallelized assembler for large genomes that uses de Bruijn graphs.</p>
</li>
<li>
<p><span>Velvet:</span> Another de Bruijn graph-based assembler optimized for short-read sequencing data.</p>
</li>
<li>
<p><span>SOAPdenovo:</span> A de Bruijn graph-based assembler designed for short reads, widely used for assembling large and complex genomes.</p>
</li>
<li>
<p><span>MaSuRCA:</span> A hybrid assembler that combines data from multiple sequencing technologies, such as Illumina and PacBio.</p>
</li>
<li>
<p><span>Canu:</span> A long-read assembler optimized for PacBio and Oxford Nanopore sequencing data.</p>
</li>
<li>
<p><span>Flye:</span> A long-read assembler suitable for bacterial and small eukaryotic genomes.</p>
</li>
<li>
<p><span>SMARTdenovo:</span> An assembler designed for long reads, particularly suited for PacBio data.</p>
</li>
<li>
<p><span>SPAdes Long Read (SPAdesLR):</span> An extension of SPAdes for long-read data, such as those from PacBio or Nanopore.</p>
</li>
<li>
<p><span>Minia:</span> An assembler optimized for low memory consumption, suitable for small and medium-sized genomes.</p>
</li>
<li>
<p><span>Unicycler:</span> A hybrid assembler that combines short and long reads for circular bacterial genome assembly.</p>
</li>
<li>
<p><span>wtdbg2:</span> A de Bruijn graph assembler for long reads, efficient for very large genomes.</p>
</li>
<li>
<p><span>Shasta:</span> A long-read assembler that uses the Overlap-Layout-Consensus approach, suitable for PacBio and Nanopore data.</p>
</li>
<li>
<p><span>Sparc:</span> An assembler designed to handle noisy long reads from Nanopore sequencing.</p>
</li>
<li>
<p><span>CANA:</span> An assembler for metagenomic data, particularly for complex and diverse microbial communities.</p>
</li>
<li>
<p><span>Ra</span> Assembler: A metagenome assembler for long reads, designed for highly complex metagenomic samples.</p>
</li>
</ol><p>Please note that the field of bioinformatics is constantly evolving, and new assembly tools may have emerged since my last update. Additionally, the performance of these tools can vary depending on the characteristics of the sequencing data and the genome being assembled. When selecting an assembly tool, consider the specific requirements of your project, the available data types, and the computational resources at your disposal. Always refer to the respective tool's documentation and publications for the most up-to-date information and recommendations.</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44581/biokit-a-set-of-tools-dedicated-to-bioinformatics-data-visualisation</guid>
	<pubDate>Tue, 18 Jun 2024 02:04:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44581/biokit-a-set-of-tools-dedicated-to-bioinformatics-data-visualisation</link>
	<title><![CDATA[BioKit: a set of tools dedicated to bioinformatics, data visualisation]]></title>
	<description><![CDATA[<p><span>BioKit is a set of tools dedicated to bioinformatics, data visualisation (</span><a href="https://biokit.readthedocs.io/en/latest/references.html#module-biokit.viz" title="biokit.viz"><code><span>biokit.viz</span></code></a><span>), access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It also contains more advanced tools related to data analysis (e.g.,&nbsp;</span><a href="https://biokit.readthedocs.io/en/latest/references.html#module-biokit.stats" title="biokit.stats"><code><span>biokit.stats</span></code></a><span>). Since R is quite common in bioinformatics, we also provide a convenient module to run R inside your Python scripts or shell (:mod:biokit.rtools module).</span></p><p>Address of the bookmark: <a href="https://biokit.readthedocs.io/en/latest/index.html" rel="nofollow">https://biokit.readthedocs.io/en/latest/index.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4094/manufacturing-life-with-j-craig-venter</guid>
	<pubDate>Thu, 29 Aug 2013 08:52:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4094/manufacturing-life-with-j-craig-venter</link>
	<title><![CDATA[Manufacturing Life with J. Craig Venter]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/PKtozMvSsBk" frameborder="0" allowfullscreen></iframe>J. Craig Venter, CEO of Synthetic Genomics, talks about finding genomic-driven solutions to address global needs such as new sources of energy, food and vaccines in an interview with James Bennet, Editor-in-Chief of The Atlantic. This program is introduced by Pradeep Khosla, the new chancellor of the University of California, San Diego.  Series: "The Atlantic Meets The Pacific" [11/2012] [Public Affairs] [Show ID: 24359]
The Atlantic Meets the Pacific playlist: http://goo.gl/5V8Yb
The Atlantic Meets the Pacific on UCTV: http://www.uctv.tv/atlanticpacific
UCTV: http://www.uctv.tv]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/19272/translate2r</guid>
	<pubDate>Fri, 21 Nov 2014 01:16:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/19272/translate2r</link>
	<title><![CDATA[translate2R]]></title>
	<description><![CDATA[<p>After their presentation at the international &ldquo;user!&rdquo; conference, data analysis specialist <a href="http://www.eoda.de/en/" target="_blank">eoda</a> starts the public alpha testing of <a href="http://www.eoda.de/en/translate2R.html" target="_blank">translate2R</a>. With the start of alpha testing the innovative migration solution by the company hailing from Kassel discards the working title &ldquo;translateR&rdquo; and takes on the final product brand name &ldquo;translate2R&rdquo;. translate2R is a service for the automated translation of SPSS&reg; syntax to R code, therefore supporting data analysts with a quick and low-risk migration to R.</p><p>The manual translation of many, frequently rather complex SPSS scripts often presents itself as a tedious and error-prone task, and represents a rather large obstacle for many analysts and companies to migrate to a modern, open source data management and analysis tool like R. With translate2R this hurdle will be diminished substantially.</p><p>Find at https://service.eoda.de/translater/?lang=en</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/36191/bioinformatics-workshops-no-coding-required</guid>
	<pubDate>Mon, 09 Apr 2018 13:06:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/36191/bioinformatics-workshops-no-coding-required</link>
	<title><![CDATA[Bioinformatics Workshops - NO CODING REQUIRED]]></title>
	<description><![CDATA[<p><img src="https://edu.t-bio.info/wp-content/uploads/2018/03/t-bioinfo-bioinformatics-workshops.jpg" alt="Bioinformatics Workshops T-BioInfo" width="568" height="319" style="vertical-align: middle; border: 0px;"></p><p>Pine Biotech, Inc., a US-based startup working with the Tauber Bioinformatics Research Center is offering a full curriculum online preparing students without any technical background for real-life challenges with large scale biomedical data. Workshops on processing, analysis and biomedical interpretation of Next Generation Sequencing data cover important up-to-date algorithms and machine learning approaches. The most important thing is that there are virtually no pre-requisites such as coding, biostatistics or advanced medical skills. If you know what gene is and how the genes are expressed, you are ready to take the courses or join our workshops. Learn more:&nbsp;https://edu.t-bio.info/workshops/</p>]]></description>
	<dc:creator>eliabrodsky</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/40485/world-promising-health-companies</guid>
	<pubDate>Tue, 31 Dec 2019 19:10:13 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/40485/world-promising-health-companies</link>
	<title><![CDATA[World promising health companies !]]></title>
	<description><![CDATA[<p>The health care industry is expected to sustain stable growth over the next decade for a variety of reasons. Advances in medicine have prolonged the average lifespans of most people, requiring more health care treatments over longer terms. In years past, once people turned 65 and enrolled in Medicare, they were expected to live another 10 to 20 years.</p><p>Biohub&nbsp;is a joint collaborative effort by Berkeley, UCSF and Stanford for a&nbsp;medical&nbsp;science research center funded by a $600 million commitment from&nbsp;Facebook&nbsp;CEO and founder Mark Zuckerberg and his wife Priscilla Chan. It is trademarked as well as CZ&nbsp;Biohub. It is currently&nbsp;co-led by Stephen Quake and Joseph DeRisi.</p><p>More at&nbsp;<a href="https://www.czbiohub.org/">https://www.czbiohub.org/</a></p><p><span>Calico LLC is an American research and development biotech company founded on September 18, 2013 by Bill Maris and backed by Google with the goal of combating aging and associated diseases. In Google's 2013 Founders' Letter, Larry Page described Calico as a company focused on "health, well-being, and longevity".</span></p><p><span>More at&nbsp;<a href="https://www.calicolabs.com/">https://www.calicolabs.com/</a></span></p><p><span><span>UnitedHealth Group, Inc. (</span><a href="https://www.investopedia.com/markets/quote?tvwidgetsymbol=unh">UNH</a><span>) is the largest health care services company in the world, serving over 50 million individuals in the United States as of late 2018 and 5 million in Brazil. The company provides a wide range of health care products and services, such as health maintenance organizations (HMOs), point of service plans (POS),&nbsp;</span><a href="https://www.investopedia.com/terms/p/preferred-provider-organization.asp">preferred provider organizations (PPOs)</a><span>, and managed fee-for-service programs.</span></span></p><p><span>More at&nbsp;<a href="https://www.unitedhealthgroup.com/">https://www.unitedhealthgroup.com/</a></span></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/13999/tedxcopenhagen-morten-sommer-what-bacteria-means-for-the-good-life</guid>
	<pubDate>Wed, 13 Aug 2014 05:07:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/13999/tedxcopenhagen-morten-sommer-what-bacteria-means-for-the-good-life</link>
	<title><![CDATA[TEDxCopenhagen - Morten Sommer - What Bacteria Means for the Good Life]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/aji0_ycIU0E" frameborder="0" allowfullscreen></iframe><p>Scientist and entrepreneur Morten Sommer will talk about how bacteria and microbes form an integral part of the human body and play a significant role in controlling human health and well About TEDx, x = independently organized event: In the spirit of ideas worth spreading, TEDx is a program of local, self-organized events that bring people together to share a TED-like experience. At a TEDx event, TEDTalks video and live speakers combine to spark deep discussion and connection in a small group. These local, self-organized events are branded TEDx, where x = independently organized TED event. The TED Conference provides general guidance for the TEDx program, but individual TEDx events are self-organized.* (*Subject to certain rules and regulations)</p>]]></description>
	
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