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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/20439?offset=1250</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37529/bokeh-an-interactive-visualization-library-that-targets-modern-web-browsers-for-presentation</guid>
	<pubDate>Fri, 10 Aug 2018 18:43:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37529/bokeh-an-interactive-visualization-library-that-targets-modern-web-browsers-for-presentation</link>
	<title><![CDATA[Bokeh: An interactive visualization library that targets modern web browsers for presentation]]></title>
	<description><![CDATA[<p id="about">Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to extend this capability with high-performance interactivity over very large or streaming datasets. Bokeh can help anyone who would like to quickly and easily create interactive plots, dashboards, and data applications.</p>
<p>To get started using Bokeh to make your visualizations, see the&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/user_guide.html#userguide">User Guide</a>.</p>
<p>To see examples of how you might use Bokeh with your own data, check out the&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/gallery.html#gallery">Gallery</a>.</p>
<p>A complete API reference of Bokeh is at&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/reference.html#refguide">Reference Guide</a>.</p>
<p>If you are interested in contributing to Bokeh, or extending the library, see the&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/dev_guide.html#devguide">Developer Guide</a>.</p><p>Address of the bookmark: <a href="https://bokeh.pydata.org/en/latest/" rel="nofollow">https://bokeh.pydata.org/en/latest/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38598/zenbu-a-collaborative-omics-data-integration-and-interactive-visualization-system</guid>
	<pubDate>Fri, 04 Jan 2019 13:35:26 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38598/zenbu-a-collaborative-omics-data-integration-and-interactive-visualization-system</link>
	<title><![CDATA[ZENBU: a collaborative, omics data integration and interactive visualization system]]></title>
	<description><![CDATA[<p><span>ZENBU</span><span>&nbsp;</span><span>is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visualizations and is able to make many-views from the same primary sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text files.&nbsp;<br>Please check our&nbsp;<a href="http://fantom.gsc.riken.jp/zenbu/wiki">documentation wiki</a>&nbsp;for details on how to use the system, or check out some of the views above.</span></p><p>Address of the bookmark: <a href="http://fantom.gsc.riken.jp/zenbu/" rel="nofollow">http://fantom.gsc.riken.jp/zenbu/</a></p>]]></description>
	<dc:creator>BioJoker</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40969/leaflet-javascript-libraries-for-interactive-maps</guid>
	<pubDate>Mon, 10 Feb 2020 01:35:07 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40969/leaflet-javascript-libraries-for-interactive-maps</link>
	<title><![CDATA[Leaflet: JavaScript libraries for interactive maps]]></title>
	<description><![CDATA[<p><a href="http://leafletjs.com/">Leaflet</a><span>&nbsp;is one of the most popular open-source JavaScript libraries for interactive maps.</span></p>
<h3>Features</h3>
<ul>
<li>Interactive panning/zooming</li>
<li>Compose maps using arbitrary combinations of:
<ul>
<li>Map tiles</li>
<li>Markers</li>
<li>Polygons</li>
<li>Lines</li>
<li>Popups</li>
<li>GeoJSON</li>
</ul>
</li>
<li>Create maps right from the R console or RStudio</li>
<li>Embed maps in&nbsp;<a href="http://yihui.name/knitr/">knitr</a>/<a href="http://rmarkdown.rstudio.com/">R Markdown</a>&nbsp;documents and&nbsp;<a href="http://shiny.rstudio.com/">Shiny</a>&nbsp;apps</li>
<li>Easily render spatial objects from the&nbsp;<code>sp</code>&nbsp;or&nbsp;<code>sf</code>&nbsp;packages, or data frames with latitude/longitude columns</li>
<li>Use map bounds and mouse events to drive Shiny logic</li>
<li>Display maps in non spherical mercator projections</li>
<li>Augment map features using chosen plugins from&nbsp;<a href="http://leafletjs.com/plugins">leaflet plugins repository</a></li>
</ul>
<p><a href="https://rstudio.github.io/leaflet/">https://rstudio.github.io/leaflet/</a></p><p>Address of the bookmark: <a href="https://rstudio.github.io/leaflet/" rel="nofollow">https://rstudio.github.io/leaflet/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44904/termal-a-fast-and-interactive-terminal-based-viewer-for-multiple-sequence-alignments</guid>
	<pubDate>Mon, 22 Sep 2025 23:51:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44904/termal-a-fast-and-interactive-terminal-based-viewer-for-multiple-sequence-alignments</link>
	<title><![CDATA[Termal: a fast and interactive terminal-based viewer for multiple sequence alignments]]></title>
	<description><![CDATA[<p>termal, a fast, interactive, terminal-based viewer for multiple sequence alignments (MSAs), designed for use on remote systems such as high-performance computing (HPC) clusters.</p>
<p>https://academic.oup.com/bioinformaticsadvances/advance-article/doi/10.1093/bioadv/vbaf208/8257678?login=true</p><p>Address of the bookmark: <a href="https://github.com/sib-swiss/termal" rel="nofollow">https://github.com/sib-swiss/termal</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17505/kau-thrissur-biotechbioinformatics-rasrfjrftraineestudentships</guid>
  <pubDate>Fri, 26 Sep 2014 20:07:28 -0500</pubDate>
  <link></link>
  <title><![CDATA[KAU Thrissur Biotech/Bioinformatics RA/SRF/JRF/Trainee/Studentships]]></title>
  <description><![CDATA[
<p>Applications are invited from eligible candidates for the following posts at Bioinformatics Centre (DIC), IT- BT Complex, College of Horticulture, Kerala Agricultural University, Vellanikkara, Thrissur.</p>

<p>1. Research Associate <br />Emoluments*: 14880/- + HRA 	<br />Qualification needed: Ph.D/M.Sc in Bioinformatics or Ph.D/M.Sc in Agriculture or Biotechnology with advanced Diploma in Bioinformatics <br />Desirable: 2 year experience in Bioinformatics.</p>

<p>2 Senior Research Fellow <br />Emoluments*: 10230/- 	<br />Qualification needed: M.Sc/ M.tech in Bioinformatics or M.Sc in Agriculture/ Biotechnology with Diploma in Bioinformatics. <br />Desirable: One year experience in Bioinformatics</p>

<p>3 Junior Research Fellow <br />Emoluments*: 9300/- 	<br />Qualification needed: M.Sc/ M.tech in Bioinformatics or M.Sc in Agriculture/Biotechnology/Plant Sciences with Diploma in Bioinformatics.</p>

<p>4 .Trainee/Studentship Bioinformatics <br />Emoluments*: 5000/- 	<br />Qualification needed: M.Sc in Bioinformatics with good knowledge of Bioinformatics softwares and tools.</p>

<p>5 Trainee/ Studentship Biotechnology <br />Emoluments*: 5000/- 	<br />Qualification needed: M.Sc in Biotechnology, with working knowledge in tissue culture, molecular markers and cloning of genes.</p>

<p>Candidates with the required qualifications and experience may give an application in the prescribed format with attested copies of certificates to prove eligibility on or before 30th November 2014. The applications are to be addressed to The Associate Dean, College of Horticulture and send to "Professor &amp; Coordinator, Bioinformatics Centre (DIC), IT-BT Complex, Kerala Agricultural University, Vellanikkara, Thrissur, Kerala 680 656”. The envelope may be superscribed “Application for the post at Bioinformatics Centre”.</p>

<p>*Emoluments are likely to be revised in 2014-2015</p>

<p>More at http://www.kaubic.in/downloads/Notification_bic.pdf<br />http://www.kaubic.in/downloads/Application%20form.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/17924/software-developed-in-pevsner-lab</guid>
	<pubDate>Mon, 06 Oct 2014 12:41:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/17924/software-developed-in-pevsner-lab</link>
	<title><![CDATA[Software developed in pevsner lab]]></title>
	<description><![CDATA[<div>
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<div id="node-7">
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<div>
<div>
<p><a href="http://pevsnerlab.kennedykrieger.org/dragon.htm">DRAGON</a>: Database Referencing of Array Genes Online</p>
<p><a href="http://pevsnerlab.kennedykrieger.org/php/node/96">SNOMAD</a>: Standardization and Normalization of Microarray Data</p>
<p><a href="http://pevsnerlab.kennedykrieger.org/php/node/70">SNPduo</a>: SNP Analysis Between Two Individuals</p>
<p><a href="http://pevsnerlab.kennedykrieger.org/php/node/71">SNPtrio</a>: Analyzing and Visualizing and Inheritance Patterns in Trios</p>
<p><a href="http://pevsnerlab.kennedykrieger.org/php/node/64">SNPscan</a>: Data Analysis and Visualization of SNP Data</p>
<p><a href="http://pevsnerlab.kennedykrieger.org/php/node/64">pediSNP</a>: Analyze SNP Data From a Pedigree of Two Generations</p>
<p><a href="http://pevsnerlab.kennedykrieger.org/php/node/73">kcoeff</a>: Calculate Cotterman Coefficients of SNP Genotype Data</p>
<p><a href="http://pevsnerlab.kennedykrieger.org/php/node/113">triPOD:</a> Detects chromosomal abnormalities in parent-child trio-based microarray data</p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div><p>Address of the bookmark: <a href="http://pevsnerlab.kennedykrieger.org/php/?q=software" rel="nofollow">http://pevsnerlab.kennedykrieger.org/php/?q=software</a></p>]]></description>
	<dc:creator>Robert M Willioms</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19580/internship-program-for-bioinformatics-biotechnology-mba-mca-no-of-vacancy-5</guid>
  <pubDate>Mon, 15 Dec 2014 08:11:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[Internship Program for Bioinformatics / Biotechnology / MBA / MCA (No. Of Vacancy: 5)]]></title>
  <description><![CDATA[
<p>ArrayGen is offering an Internship Program for Post graduate Bioinformatics / Biotechnology / MBA / MCA students and professionals. ArrayGen Technologies provide an excellent opportunity to gain research experience and explore if a scientific career is right for you. Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis or marketing or software development. Applications are accepted throughout the year. Accepted students will be notified through email.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33617/list-of-universities-offering-bachelor-or-master-bioinformatics-degree-in-pakistan</guid>
	<pubDate>Wed, 21 Jun 2017 04:20:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33617/list-of-universities-offering-bachelor-or-master-bioinformatics-degree-in-pakistan</link>
	<title><![CDATA[List of universities offering Bachelor or Master bioinformatics degree in Pakistan]]></title>
	<description><![CDATA[<p>There are a lot of universities offering Bachelor or Master degree in Pakistan. Following are the list of few intitute/universities</p><p>Bachelor/ BS Bioinformatics at<br />1. Al-khair University, Bhimber<br />2. Government College University, Faisalabad<br />3. University Of Agriculture, Faisalabad<br />4. Comsats Institute Of Information Technology [isb], Islamabad<br />5. International Islamic University, Islamabad<br />6. Quaid-e-azam University, Islamabad<br />7. Khushal Khan Khattak University, Karak<br />8. Virtual University Of Pakistan, Lahore<br />9. Virtual University Of Pakistan, Lahore<br />10. Hazara University, Mansehra<br />11. Shaheed Benazir Bhutto Women University, Peshawar<br />12. Comsats Institute Of Information Technology, Sahiwal<br />13. Capital University Of Science And Technology, Islamabad<br />14. Foundation University, Islamabad<br />15. Baqai Medical University/hospital, Karachi<br />16. Institute Of Business And Technology(main Campus), Karachi<br />17. Sir Syed University Of Engineering &amp; Technology, Karachi<br />18. Forman Christian College, Lahore<br />19. Qarshi University (lhr), Lahore<br />20. The Superior University, Lahore<br />21. University Of Management And Technology, Lahore<br />22. Federal Institute Of Health Sciences, Lahore<br />23. Shaheed Benazir Bhutto Women University Peshawar, Sub Campus, Swabi<br />24. Government Postgraduate College ( Mandian), Abbottabad<br />25. Federal Institute Of Health Sciences, Multan<br />26. Fedral Institute Of Health Sciences, Muzaffarabad<br />27. The Limit Institution Of Health Sciences, Sahiwal</p><p><br />Master/ MS Bioinformatics cources at<br />1. Government College University, Faisalabad<br />2. Comsats Institute Of Information Technology [isb], Islamabad<br />3. International Islamic University, Islamabad<br />4. National University Of Science &amp; Technology, Islamabad<br />5. Quaid-e-azam University, Islamabad<br />6. University Of Sindh, Jamshoro<br />7. Virtual University Of Pakistan, Lahore<br />8. Hazara University, Mansehra<br />9. Shaheed Benazir Bhutto Women University, Peshawar<br />10. Capital University Of Science And Technology, Islamabad<br />11. Cecos University Of Information Tech. &amp; Emerging Sciences, Peshawar</p><p>The real bioinformatics scope lies if there are research labs which work in this field. One has to take account of that. If so then try to get information of those labs and visit them to get a hang of the work they pursue.</p><p>There is a huge buzz of precision medicine in light of genomics all around the world. One should also try to see how genomics infrastructure is built up or standing in Pakistan. If research labs having collaboration with hospitals employ genomics then one must also visit such labs. This will bring new avenues in healthcare advances. Not only it opens up the wealth of knowledge one can make out of genomics study but will also advance the critical thinking of therapies.</p><p>So I would encourage to target research labs working in the fields and also get information of hospitals employing genomics, this will give you an overall understanding of the fields demand in your country.</p>]]></description>
	<dc:creator>Reshma Khatun</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33629/list-of-universities-offering-bachelor-master-or-phd-bioinformatics-degree-in-malaysia</guid>
	<pubDate>Thu, 22 Jun 2017 01:34:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33629/list-of-universities-offering-bachelor-master-or-phd-bioinformatics-degree-in-malaysia</link>
	<title><![CDATA[List of universities offering Bachelor,  Master or PhD bioinformatics degree in Malaysia]]></title>
	<description><![CDATA[<p>Bioinformatics is a newly emerging interdisciplinary research area, which may be defined as the ―interface between biological and computational sciences. Most of the Bioinformatics work that is done can be described as analyzing biological data, although a growing number of projects deal with the organization of biological information. The global Bioinformatics industry has grown at a double-digit growth rate in the past and is expected to follow the same pattern in the next four years. US remains the largest market in the world, but Asia-Pacific countries, particularly India and China, are witnessing the fastest growth and are anticipated to emerge as the dominating forces in future. The Comparison of Bioinformatics Industry between Malaysia, India and other countries&nbsp;are discussed in this&nbsp;<span>http://ijbssnet.com/journals/Vol.%202_No._10;_June_2011/11.pdf paper.</span></p><p>Bioinformatics is full of opportunities. The sector is poised to open new avenues for the other related sectors also. But the biggest opportunity area in the Bioinformatics market will be in the drug discovery sector. Reduction of both the cost and time taken to discover a new drug due to fast development in the Bioinformatics tools and software zone is also making drug discovery an attractive field to venture in. Malaysian bioinformatics growth and future are discuss in this https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723929/ paper.&nbsp;Keeping all such inportance in mind, following universities in Malaysia offering bioinformatics cources:</p><p><strong>3 program(s) at AIMST University<strong>, Malaysia</strong></strong></p><p>Master of Science in Biotechnology (MSc) - Bioinformatics by Research</p><p>Master of Science (M.Sc) in Medical Microbiology (Bioinformatics) by Research</p><p>Doctor of Philosophy in Biotechnology (PhD) - Bioinformatics by Research</p><p>&nbsp;</p><p><strong>1 program(s) at INTI International University and Colleges<strong>, Malaysia</strong></strong></p><p>American Degree Transfer Program (Biosciences) in Bioinformatics</p><p>&nbsp;</p><p><strong>3 program(s) at Management and Science University (MSU)<strong>, Malaysia</strong></strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>1 program(s) at Multimedia University (MMU)<strong>, Malaysia</strong></strong></p><p>Bachelor of Science (Honours) Bioinformatics</p><p>&nbsp;</p><p><strong>1 program(s) at Universiti Industri Selangor (UNISEL) Bestari Jaya Campus<strong>, Malaysia</strong></strong></p><p>Bachelor of Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>2 program(s) at Universiti Malaysia Sabah (UMS)<strong>, Malaysia</strong></strong></p><p>PhD - Doctor of Philosophy in Bioinformatics (By Research)</p><p>MSc - Master of Science in Bioinformatics (By Research)</p><p>&nbsp;</p><p><strong>6 program(s) at Universiti Putra Malaysia (UPM)<strong>, Malaysia</strong></strong></p><p>MSc - Master of Science in Bioinformatics by Research</p><p>Master of Science in Bioinformatics and System Biology by Research</p><p>Master of Science (M.Sc) in Bioinformatics and Systems Biology (With Thesis)</p><p>PhD - Doctor of Philosophy in Bioinformatics by Research</p><p>PhD - Doctor of Philosophy in Bioinformatics and Systems Biology (With Thesis)</p><p>PhD - Doctor of Philosophy in Bioinformatics and System Biology by Research</p><p>&nbsp;</p><p><strong>1 program(s) at Universiti Selangor (UNISEL)<strong>, Malaysia</strong></strong></p><p>Bachelor of Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>3 program(s) at Universiti Teknologi Malaysia (UTM)<strong>, Malaysia</strong></strong></p><p>M.Sc - Master of Science (Bioscience) in Bioinformatics Research Group (BIRG) By Research</p><p>PhD - Doctor of Philosophy (Bioscience) in Bioinformatics Research Group (BIRG) By Research</p><p>Bachelor of Computer Science (BioInformatics)</p><p>&nbsp;</p><p><strong>4 program(s) at University of Malaya (UM)<strong>, Malaysia</strong></strong></p><p>MSc - Master of Science in Bioinformatics by Research</p><p>Master in Bioinformatics by Coursework</p><p>PhD - Doctor of Philosophy in Bioinformatics by Research</p><p>Bachelor of Science (BSc) in Bioinformatics</p><p>&nbsp;</p><p><strong>3 program(s) at Perdana University<strong>, Malaysia</strong></strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>3 program(s) at&nbsp;Monash University, Malaysia</strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><span>The real bioinformatics scope lies if there are research labs which work in this field. One has to take account of that. If so then try to get information of those labs and visit them to get a hang of the work they pursue. For detail Bioinformatics in Malaysia: Hope, Initiative, Effort, Reality, and Challenges are discussed in&nbsp;<span>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723929/ paper.</span></span></p>]]></description>
	<dc:creator>sahabuddin</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21685/uiar-short-term-trainingfinal-year-dissertation-project-in-life-sciencesbioinformaticsbiotech</guid>
  <pubDate>Mon, 16 Mar 2015 23:56:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[UIAR Short-Term Training/Final Year Dissertation Project in Life Sciences/Bioinformatics/Biotech]]></title>
  <description><![CDATA[
<p>Short-term training/Final year dissertation project</p>

<p>Candidates desirous of doing a short-term training / final year dissertation project for MSc (Life Sciences/Bioinformatics/Biotechnology or any science discipline) at UIAR Biophysics and Bioinformatics department may please drop an email atanju@iiar.res.in along with their resume.</p>

<p>Selected candidates will be further intimated. There will be a fees charged for doing the project at UIAR. The projects will be experimental or computational or involve both.</p>

<p>The training scope will be in the following areas but not limited to:</p>

<p>Bioinformatics analysis, Docking and Virtual screening, Molecular Dynamics simulation, Cloning, expression and purification of proteins, Biophysical and Biochemical characterisation of proteins, Crystallization and Structural Studies.</p>

<p>Advertisement: www.iiar.res.in/?q=node/450</p>
]]></description>
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