BOL: Related items

Science for Life Laboratory (SciLifeLab)-Sweden

Sat, 10 May 2014 06:22:30 -0500

Science for Life Laboratory (SciLifeLab) is a national center for molecular biosciences with focus on health and environmental research. The center combines frontline technical expertise with advanced knowledge of translational medicine and molecular bioscience. SciLifeLab is a national resource and a collaboration between four universities: Karolinska Institutet, KTH Royal Institute of Technology, Stockholm University and Uppsala University.

Webpage : https://www.scilifelab.se/about-us/
Opportunity: https://www.scilifelab.se/about-us/career/

RA Bioinformatics at NII

Thu, 22 Oct 2015 01:56:26 -0500

NATIONAL INSTITUTE OF IMMUNOLOGY

NEW DELHI-110067

Applications are invited for the position of Research Associate (RA) for the following time-bound sponsored project as per the details given below:

1. BTIS project entitled, “National Infrastructural Facility in the Area of Immunology” funded by DBT

Research Associate (One Position only)

Dr. Debasisa Mohanty Staff Scientist-VI deb@nii.res.in

Educational Qualifications: Ph.D in Bioinformatics or Biological Sciences or Biotechnology with research experience and publication record in indexed peer reviewed journals in the area of bioinformatics or computational biology.

Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications & experience Research Associate: Rs. 36,000/- per month plus 30% HRA

Job description & Desired Knowledge: The candidate should be well versed in Programming in PERL/C++, HTML, CGI, web sever and portal development, computational analysis of protein structure & function, molecular dynamics simulations and use of high performance computing systems.

General Terms & Conditions:-

1. The candidates selected for the above posts will be on contract for one year or duration of the project whichever is shorter, at a time.

2. No hostel/ housing facility will be provided.

3. Applicants may clearly mention the category they belong to i.e. SC/ST/OBC/PH and attach documentary proof of the same.

4. No TA/DA will be paid for attending the interview, if called for.

5. Apart from sending application in the prescribed format given below, candidates should send complete Curriculum Vitae along with the names of three referees. Curriculum Vitae should contain details of the experimental expertise and list of publications. 6. Canvassing in any form will be a disqualification.

HOW TO APPLY Interested candidates may apply directly, STRICTLY IN THE PRESCRIBED FORMAT GIVEN BELOW, through e-mail, to the Investigator of the project, clearly indicating the name of the project along with their complete C.V., Email ID, fax numbers, telephone numbers. Only Short listed candidates will be called for interview and they required to submit attested copies of all their certificates and a Demand Draft of Rs 100/- drawn on Canara Bank or Indian Bank payable at Delhi/New Delhi in favour of the Director, NII (SC/ST/PH and Women candidates are exempted from payment of fees) subject to submission of documentary proof), at the time of interview. (E-MAIL APPLICATIONS SHOULD MENTION BTIS-RA 2015 IN THE SUBJECT LINE)

LAST DATE OF RECEIPT OF APPLICATIONS: 29th October, 2015

www1.nii.res.in/sites/default/files/projectappointments-Dr.Mohanty-29oct2015.pdf

Next Generation Sequencing (NGS) Tutorials

Jitendra Narayan — Sat, 24 Aug 2013 06:01:37 -0500

Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/

You can also add your favourite NGS educational material, or workshop tutorial by commenting on this bookmarks for user benefit.

Understanding the basics of genome sequencing:

Tutorial by Luke Jostins.

http://www.genetic-inference.co.uk/blog/2009/04/basics-sequencing-dna-part-1/

http://www.genetic-inference.co.uk/blog/2009/08/basics-sequencing-dna-part-2/

A window into third-generation sequencing

http://hmg.oxfordjournals.org/content/19/R2/R227.full.pdf

==============================================

NGS data analysis pipelines

Detecting and annotating genetic variations using the HugeSeq pipeline DOI: 10.1038/nbt.2134
NARWHAL, a primary analysis pipeline for NGS data http://bioinformatics.oxfordjournals.org/cgi/content/abstract/28/2/284?etoc
RseqFlow: Workflows for RNA-Seq data analysis DOI: 10.1093/bioinformatics/btr441
ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence 10.1186/1471-2164-12-285
A framework for variation discovery and genotyping using next-generation DNA sequencing data PubMed: 21478889
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects DOI: 10.1186/1471-2105-12-134 Abstract: http://www.biomedcentral.com/1471-2105/12/134/abstract
WEP: a high-performance analysis pipeline for whole-exome data http://www.biomedcentral.com/1471-2105/14/S7/S11
DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089
GATK: a Toolkit for Genome Analysis http://www.broadinstitute.org/gatk/
Metagenomics:http://www.nbic.nl/education/nbic-phd-school/course-schedule/ngsmetagenomics/
RNASeq:http://www.nbic.nl/education/nbic-phd-school/course-schedule/ngsrnaseq/
Bioinformatics and Seq courses: http://www.isb-sib.ch/training/training-activities-schedule/archive-2013.html
Variant Detection (Model organism) Advanced tutorial https://docs.google.com/document/pub?id=1CuKkKylVDb03tnN7RSWl5EUzleetn0ctjmvaidPKLxM
Variant Detection Introductory tutorial https://docs.google.com/document/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oejdI
Microbial de novo Assembly for Illumina Data Introductory tutorial https://docs.google.com/document/pub?id=1N3AB9ptISUu4zULqe1kXpVF0BDyGb5f5yzxWSJd_WNM
RNAseq Differential Gene Expression Introductory tutorial https://docs.google.com/document/pub?id=1KbTiBHtvHLfPRZ39AY3uriazrINA8TJzgjjwn1zPP7Y

" Please add your favourite NGS link below in comment section for the benefit of bioinformatics community ".

Address of the bookmark: http://chagall.med.cornell.edu/NGScourse/

BIRAC Innovation Fellowships Qualification & Eligibility

Thu, 01 Jun 2017 02:12:37 -0500

BIRAC Innovation Fellowships are highly competitive and prestigious. Under each University Innovation Clusters there are two Post-Doctoral and four Post Masters position.

Stipend / Fellowship (consolidated)
Post-doctoral = Rs 50,000 per month
Post Masters = Rs 30,000 per month.

Duration of Fellowships:
Both Post-Doctoral and Post-Masters fellowships are for two years extendable to one more year depending on the progress of the project and decision of the technical committee.

The University Innovation Clusters established at the five Universities have their broad scientific areas under which BIRAC Innovation Fellows will be selected. The qualification and eligibility of each UIC has been mentioned below.

Who can apply?
BIRAC along with five UICs invites research proposals from:

 Applicants who have completed their Master/ Ph.D. on and after 1st January 2014 for
Post Masters and Post-Doctoral BIRAC Innovation Fellowships

Applicants will have to submit an online application in the prescribed format. Each application will be reviewed by an expert committee at each UIC, which applicant has chosen. Applications will be identified on the identified criteria. Selected applicants will be called for a detailed project presentation and personal interview in front of an expert committee for final selection of the BIRAC Innovation Fellows.

Mere fulfilling the eligibility criterion does not entitle applicants to be called for interview.

More at http://birac.nic.in/webcontent/UIC_Fellowships_Qualification_Eligibility.pdf

The Minerva Research Group for Bioinformatics

Tue, 27 May 2014 15:48:14 -0500

The focus of the bioinformatics group is to use computational approaches to gain an insight into genome evolution in primates.

http://www.eva.mpg.de/genetics/bioinformatics/overview.html?Fsize=0%2C%20%40%2F%27

Kelso Group
Department of Evolutionary Genetics
Max Planck Institute for Evolutionary Anthropology
Deutscher Platz 6
04103 Leipzig
Germany
Phone: +49 341 3550 500

Job:
http://www.eva.mpg.de/genetics/bioinformatics/jobs.html?Fsize=0%2C%2B%40

PhD Hunt: Your Gateway to Nordic Academic Opportunities

LEGE — Thu, 02 Jan 2025 19:55:22 -0600

Embarking on a PhD journey is a transformative step in academia. To ease this transition, we brings you a curated list of top resources and institutions across Denmark, Sweden, Norway, and Finland. These links will guide you through finding opportunities and navigating the academic landscape in the Nordic region.

PhD Opportunities in Denmark Denmark boasts a robust academic infrastructure with world-class universities. Here are some essential resources:

Study in Denmark: https://studyindenmark.dk

Aarhus University: https://phd.au.dk

Euraxess Denmark: https://euraxess.dk

Technical University of Denmark (DTU): https://dtu.dk

University of Copenhagen: https://phd.ku.dk

Copenhagen Business School: https://cbs.dk

Jobindex: https://jobindex.dk

Roskilde University: https://ruc.dk

University of Southern Denmark: https://sdu.dk

Academic Positions Denmark: https://academicpositions.dk

PhD Opportunities in Sweden Sweden is renowned for its innovation-driven academic culture. Here’s where you can find opportunities:

FindAPhD Sweden: https://findaphd.com/phds/sweden

Euraxess Sweden: https://euraxess.se

Academic Positions Sweden: https://academicpositions.se

KTH Royal Institute of Technology: https://kth.se

Lund University: https://lu.se

Uppsala University: https://uu.se

Chalmers University of Technology: https://chalmers.se

Linköping University: https://liu.se

Stockholm University: https://su.se

Swedish University of Agricultural Sciences (SLU): https://slu.se

Study in Sweden: https://studyinsweden.se

Malmö University: https://mau.se

PhD Opportunities in Norway Norway offers unique research opportunities, complemented by its stunning natural landscapes:

JobbNorge: https://jobbnorge.no

Euraxess Norway: https://euraxess.no

University of Oslo: https://uio.no

Norwegian University of Science and Technology (NTNU): https://ntnu.edu

Norwegian Business School (BI): https://bi.edu

Norwegian School of Economics: https://nhh.no

Norwegian University of Life Sciences (NMBU): https://nmbu.no

Norwegian School of Sport Sciences: https://nih.no

University of Bergen: https://uib.no

Nord University: https://nord.no

UiT The Arctic University of Norway: https://uit.no

PhD Opportunities in Finland Finland’s education system emphasizes research excellence and innovation. Explore these resources:

FindAPhD Finland: https://findaphd.com/phds/finland

Euraxess Finland: https://euraxess.fi

University of Helsinki: https://helsinki.fi

Aalto University: https://aalto.fi

University of Turku: https://utu.fi

Tampere University: https://tuni.fi

University of Eastern Finland: https://uef.fi

University of Jyväskylä: https://jyu.fi

Åbo Akademi University: https://abo.fi

Hanken School of Economics: https://hanken.fi

LUT University: https://lut.fi

Conclusion The Nordic countries offer exceptional opportunities for PhD aspirants. From top-ranked universities to specialized research institutions, the possibilities are endless. Bookmark PhD Hut as your starting point, and let these resources guide you to your academic aspirations.

EWAS: epigenome-wide association study software 2.0

Jit — Wed, 21 Mar 2018 18:14:00 -0500

EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0 software was developed based on our “population epigenetic framework” and can perform: (1) epigenome-wide single marker association study; (2) epigenome-wide methylation haplotype (meplotype) association study; and (3) epigenome-wide association meta-analysis.

Address of the bookmark: http://www.bioapp.org/ewas/

Bioinformatics Courses Around the World

Jitendra Narayan — Fri, 19 Jul 2013 02:43:46 -0500

Bioinformatics Courses around the world

Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are:

To show the extent of growth of this new discipline
To provide a resource for students, and academics and
To access notes on the subject to allow some brief comparisons between courses.

The graduate courses outlined in the table mainly exist as a coursework component of an MSc or PhD degree. Of course, many institutions will also have pure research programs in Bioinformatics at the Hons, MSc, or PhD level and will not have a 'coursework component'. These research programs may not always reflect the main research program of the institution since the research depends upon the interests of a particular individual or small team within that institution. It is difficult to track these individual research programs. Consequently, we have not included all institutions with a bioinformatics research project. Bioinformatics is an interdisciplinary subject and this is reflected in the fact that the courses are offered by departments or schools as diverse as: computer science, biochemistry, molecular biology, microbiology, engineering, and mathematics. Similarly, bioinformatics may also be known by other names such as: computational biology, biocomputing, molecular informatics, computational molecular biology, biological information theory, molecular phylogenetics, and molecular bioinformatics.

Bioinformatics University Courses

Baylor College of Medicine, USA Ph.D. in structural and computational biology and molecular biophysics
Boston University, USA M.S. and Ph.D. program in bioinformatics
Carnegie Mellon, USA B.S., M.S. and Ph.D. Merck Computational Biology and Chemistry Program
George Mason University, USA M.S. and Ph.D. in bioinformatics and computational biology
Georgia Institute of Technology, USA M.S. in bioinformatics; Ph.D. in Bioinformatics and Computational Biology
Indiana University, USA B.S. and M.S. in informatics
Iowa State University, USA Ph.D. program in bioinformatics and computational biology
Johns Hopkins University, USA Ph.D. program in computational biophysics
Keck Graduate Institute, USA M.S. and Ph.D. in Bioinformatics and Computational Biology
Marquette University/MCW, USA M.S. in bioinformatics
New Jersey Institute of Technology M.S. and Ph.D. in Computational Biology
North Carolina State University, USA M.S. and Ph.D. in bioinformatics
Northern Illinois University, USA M.S. specialization in bioinformatics
Northeastern University, USA M.S. in bioinformatics
OHIO State University, USA Graduate Program in Biomedical Informatics
Rensselaer Polytechnic Institute, USA B.S. in bioinformatics and molecular biology
Rutgers University, USA Ph.D. in computational molecular biology
Stanford University, USA M.S. and Ph.D. in biomedical informatics
University of Medicine & Dentistry of New Jersey, USA M.S. and Ph.D. program in biomedial informatics
University of Medicine & Dentistry of New Jersey, USA M.S. and Ph.D. Bioinformatics track
University of Albany, USA Ph.D. program in comparative functional genomics
University of California, Irvine, USA M.S. and Ph.D Informatics in Biology and Medicine
University of California, Los Angeles, USA M.S. and Ph.D. program in bioinformatics
University of California, Santa Cruz, USA B.S., M.S. and Ph.D. in Bioinformatics
University of California, San Diego, USA Ph.D. Bioinformatics
University of California, San Francisco, uSA M.S. and Ph.D. program in biological and medical informatics
University of Cincinnati, USA M.S. and Ph.D. Biomedical Engineering-Bioinformatics track
University of Illinois, Chicago, USA M.S. & Ph.D. Bioinformatics
University of Memphis, USA M.S. concentration in bioinformatics
University of Michigan, Ann Arbor, USA M.S. & Ph.D. Bioinformatics
University of Minnesota, USA M.S. & Ph.D. Bioinformatics
University of Nebraska, Omaha, USA M.S. and Ph.D. in Bioinformatics
University of North Carolina, USA M.S. & Ph.D. Bioinformatics and Computational Biology
University of Pennsylvania, USA B.S., M.S. and Ph.D. programs in Computational Biology/Bioinformatics
University of Pittsburgh, USA M.S. and Ph.D. in bioimedical informatics
University of the Sciences in Philadelphia, USA B.S. in bioinformatics
University of the Sciences in Philadelphia, USA M.S. in bioinformatics
University of Southern California, USA M.S. & Ph.D. in Molecular and Computational Biology
University of Texas at Austin, USA Ph.D. in Cell and Molecular Biology-Structural Biology and Bioinformatics track
University of Texas at El Paso, USA M.S. in bioinformatics
University of Washington, Seattle, USA Ph.D. Graduate program in computational molecular biology
University of Wisconsin-Madison, USA Graduate Certificate in Bioinformatics
University of Wisconsin-Parkside, USA B.S. Molecular Biology & Bioinformatics; M.S. Applied Molecular Biology
Virgina Tech, USA Graduate program in bioinformatics
Washington University St Louis, USA Graduate program in computational biology
Centro de Ingenieria Geneticay Biotecnologia , Cuba
one week course
introductionto bioinformatic, June 21-25, 1999
(Universidad ) Nacional de General San Martin, Argentina
Instituto de Investigaciones Biotecnologicas
introduccion a la bioinformatica

Canada

Bioinformatics Training Program for Health Research (M.Sc. or Ph.D. in Bioinformatics)
Seneca College, Toronto (post-graduate diploma in Bioinformatics)
University of Toronto (Program in Proteomics and BioInformatics)
Simon Fraser University
University of British Columbia
University of Victoria
University of Alberta
The University of Calgary, Faculty of Medicine, The O'Brien Centre offers Bachelor of Health Sciences program (BHSc) in Bioinformatics
University of Lethbridge
University of Saskatchewan
University of Manitoba
Brock University
Carleton University
McMaster University
Queen's University
University of Guelph
University of Ottawa
University of Toronto
University of Waterloo offers Undergraduate research in Bioinformatics
University of Western Ontario
Wilfrid Laurier University
York University
Concordia University
McGill University
Université de Montréal
Mount Allison University
University of New Brunswick
Dalhousie University
University of Prince Edward Island
Memorial University of Newfoundlan

Europe

Birkbeck College, University of London (Accredited online course in protein structure) M.Sc. in molecular modelling and bioinformatics
Cranfield Centre for Bioinformatics and IT - MSc. Bioinformatics
Oxford University - Part-time MSc. in Bioinformatics
University of Abertay Dundee, UK Information Technology (Bioinformatics) - PGDip/MSc
University of Exeter - MSc, Diploma and Certificate in BioinformaticsMSc/MRes/PgDip/PgCert in Bioinformatics
University of Leeds, M.Res. in Bioinformatics
University of Liverpool, M. Sc. in Biosystems and Informatics
University of Manchester, Masters Program M.Sc. in bioinformatics, distance learning
University of Nottingham, Master of Philosophy in Molecular Biology with Bioinformatics
University of Wales College of Medicine, Cardiff, UK - Masters/Diploma/Postgraduate Certificate in Genetic Epidemiology and Bioinformatics
University of Glasgow, MRes in Bioinformatics
University of York, MRes in Bioinformatics
De Montfort University , MSc programme in Bioinformatics

Sweden

Uppsala University, Sweden (Basic courses)
University of Skovde, Sweden (MSc in bioinformatics)
Chalmers University Masters Program in Bioinformatics

Norway

University of Bergen, Norway (Masters-level courses)

Germany

Max Planck Institute for Molecular Genetics and Free University Berlin , PhD programs at the IMPRS-CBSC
Univ.of Bielefeld, Naturwissenschaftliche Informatik (Master's level course)
University of Tuebingen, Bioinformatics

Finland

Helsinki University, Graduate School in Computational Biology, Bioinformatics, and Biometry

France

Pasteur Institute (France) The bioinformatics courses at the Pasteur Institute are organized with the collaboration of the two largest Parisian scientific universities, Paris VI "Pierre et Marie Curie" and Paris VII "Denis Diderot". The diplomas delivered to students of these courses are considered equivalent to university degrees, for 1998 tuition of about 3 000 French Francs, or $500 US.
Université Montpellier II (IMGT Education - Immunoinformatics) (France)
Master's/PhD bioinformatique at Universite de Rennes
Master's/PhD Analyse de Génomes et Modélisation Moléculaire Université Paris
Master's/PhD "Application des Mathématiques et de l'Informatique à la Biologie" at Université d'Evry
Master's Bioinformatique at Université Paul Sabatier Toulouse
Master's/PhD bioinformatique de Bioinformatique et Genomique at Université Versailles St Quentin
Master's Pro Bioinformatique, Universite de Clermont-Ferrand
Master's Bioinformatique at Universite de Lille
Mastere Sciences, Mention: Bioinformatique, Biochimie Structurale et Génomique (BBSG) at Aix-Marseille University
(Universiteit) Amsterdam , Amsterdam, The Netherlands Centre for Integrative Bioinformatics
2-year International Masters in bioinformatics
(Univ of) Athens , Athens, Greece Bioinformatics postgraduate programme, Faculty of biology
http://bioinforMatics.biol.uoa.gr/msc/index-en.html
Semester A: 1. molecular biology & genomics; 2. biomolecular structure and function; 3. programming languages and software tools in bioinformatics (I); 4. statistics in bioinformatics; 5. principles and methods in bioinformatics; 6. application of informatics in the study and preservation of biodiversity.
Semester B: 1. computational analysis of biomacromolecular sequences; 2. computational analysis of biomacromolecular structures; 3. programming languages and software tools in bioinformatics (II); 4. molecular recognition - molecular diseases - structural drug design; 5. methodology of research.
Optional courses: 1. data types - databases - biological database design; 2. architecture of internet application and bioinformatics; 3. intelligent system techniques in bioinformatics; 4. complex adaptive systems; 5. special topics in bioinformatics.
Associazione Italiana Logica ed Applicazioni (AILA) , Italy
one time only,
11th International School for Computer Science Researchers: Computational Biology, June 20- July 3, 1999
(Universitat de) Barcelona and (Universitat) Pompau Fabra , Spain
Roderic Guigo, Enrique Blanco, Genis Parra, Sergi Castellano
a course on sequence analysis, a course on gene finding, a course on analysis of promoter region,...
master: bioinformatics for health sciences (2004-2005)
(Univ of) Bergen , Norway
Dept of Informatics,
I181 (Soking og maskinlaring)
KB207 (anvendt bioinformatikk), Fall 1999
(Universita di) Bologna , Italy
DEGREE: Laurea Specialistica in bioinformatics http://www.biocomp.unibo.it/lsbioinfo/
(Univ of) Buckingham , UK
Information Systems Department, plus Diabetes, Obesity and Metabolic Research Lab
MSc program on bioinformatics
(Univ of) Cambridge , UK MPhil in Computational Biology
Chalmers Univ (and Goteborg Univ), Sweden
Math,
MSN48, bioinformatics for biologists; MSN54, second course in bioinformatics; MSN56, population genetics; MSN55, statistical genetics
Cranfield Univ , Silsoe, UK
Centre for Bioinformatics & IT
MSc in bioinformatics
De Montfort University, UK
Bioinformatics MSc program 2003/2004
Dublin City University, Dublin, Ireland MSs in bioinformatics
Eidgenossische Technische Hochschule Zurich
Gina Cannarozzi
37-524 (computational biology), Oct 2000 - Feb 2001
Lars Ellgaard
01-327 (introduction to bioinformatics)
European Molecular Biology Network - Italian Node , Consiglio Nazionale delle Ricerche (CNR), Bari, Italy
David Judge, James Bonfield, three-day course
Sequencing Project Management Using the Staden package, September 20 - 22, 1999
European Molecular Biology Network - Swiss Node , Switzerland
one-week course
introduction to sequence analysis, Sept 2000
European Genetic Foundation , Bologna, Italy one-week courses
5th course in bioinformatics (Mar 20-24, 2005)
4th course in bioinformatics for functional genomics (March 26-30, 2004)
3rd course in bioinformatics (Aug 24-28, 2002)
2rd course in bioinformatics (Nov 14-18, 2001)
1st course in bioinformatics (Oct 22-26, 2000)
European Science Foundation , UK and other european countries
various
European School of Genetic Medicine, Italy
8th course in Bioinformatics & Systems Biology for Molecular Biologists, Bertinoro di Romagna, Italy, 16-20 May, 2008.
Exeter Univ, UK
School of Engineering and Computer Science and School of Biological Sciences, Postgraduate Programmes in Bioinformatics (E594/D594/C594)
BIO6201 (generic and transferable skills for bioinformatics), BIO6202 (bioinformatics tools and techniques), BIO6203 (biological sequence analysis and structural bioinformatics), BIO6204 (machine learning techniques in bioinformatics), BIO6205 (information systems for bioinformatics), BIO6206 (biotechnology and bioethics), BIO6207 (masters research project in bioinformatics), BIO6208 (diploma research project).
Free Univ Berlin Germany
Steffen Schulze-Kremer
Molekulare Bioinformatik, Summer 1993; Winter 1993-94 ; Summer 1995
(Univ of) Geneva , Swiss Institute of Bioinformatics, and (Univ of) Lausanne , Switzerland
Diplome d'etudes approfondies (DEA) plurifacultaire en Bioinformatique
(Univ of) Glasgow , Glasgow, Scottland, UK
Institute of Biomedical and Life Sciences
Master of Research (MRes) in bioinformatics (another page)
Graz Univ of Technology, Austria
Bioinformatics group of Institute of Biomedical Engineering
445.037, 445.038 (bioinformatics)
(Instituto) Gulbenkian de Ciencia , Portugal bioinformatics training courses ( several weekly course per year)
(Univ of) Helsinki , Helsinki, Finland
DEGREE: Master in bioinformatics http://www.cs.helsinki.fi/bioinformatiikka/mbi/
DEGREE: Ph.D program in computational biology, bioinformatics, and biometryhttp://www.cs.helsinki.fi/combi/
Human Genome Mapping Project Resource Centre , UK
2-3 days course
introductory biocomputing course, 2000; 1999 ;
gene ID and protain analysis, 2000; June 1999 ;
sequencing project management, 2000; 1999 ;
protein structure prediction, 2000; Nov 1999 ;
ACEDB workshop, 2000
Humboldt Univ Berlin , Germany
H Herzel, J Schuchhardt
G-31163 (introduction to bioinformatics), winter 1999-2000
Imperial College , London, UK
MC Field, Director
MSc in bioinformatics
International Centre for Genetic Engineering and Biotechnology , Trieste, Italy
Sandor Pongor, organizer (one week course)
bioinformatics: computer methods in molecular biology, Sept 1-6, 1997; July 3-10, 1998; 9-16 July 1999 ; june 30 -july 7, 2000
International Max Planck Research School for Computational Biology and Scientific Computing , Berlin, Germany http://www.imprs-cbsc.mpg.de/
3-year Ph.D program starting in October.
Karolinkska Institute , Sweden
Niclas Jareborg, Bill Wilson, Pia Jorgensen (one week course)
biomedicin - bioinformatics course;
bioinformatics, May 1999
Introduktion till bioinformatik, Jan-Feb 1999
Katholieke Universiteit Leuven , Leuven, Belgium master of bioinformatics
King's College London , UK
DEGREE: MSc/PG, PhD http://www.kcl.ac.uk/schools/pse/bioinform/
(Univ of) Leeds , UK
Master in Research in bioinformatics ,
BIOL5020M (bioinformatics of protein sequence, structure and function); BIOL5030M (bioinformatics project) BIOL5010M (bioinformatics programming (1)); BIOL5120M (bioinformatics programming (2)); BIOL5160M (bioinformatics of transcriptomic and proteomics); BIOL5170M (advanced options in bioinformatics and computational biology);
online MSc Bioinformatics program
(Univ of) Libre de Bruxelles , Belgium
Univ Libre de Bruxelles (ULB) plus 4 other universities: Facultes Univ Notre-Dame de la Paix(FUNDP), Univ de Liege (ULG), Univ Catholique de Louvain (UCL), and Univ de Mons-Hainaut (UMH), jointly organize a master program in bioinformatics
course (fall, 2000)
(Universidade de) Lisboa, Faculdade de Ciencias da (Faculty of Sciences of the University of Lisbon), Portugal post-graduate programme in bioinformatics (certificate, one year)
Ludwig-Maximilians-Universitat , Germany bachelor in bioinformatics
(Univ) Manchester, UK
Bioinformatics Unit
BS5061 (bioinformatics I), BS5072 (bioinformatics II), BS6220 (theory and algorithms in bioinformatics), BS5092 (biocomputing)
(Uni de la) Mediterannee , Marseille, France
Daniel Gauthret
bioinformatique, 2000
National University of Ireland , Maynooth, Ireland
EMBO Bioinformatics Workshop (June 25 - July 1, 2001)
undergraduate degree in computational biology and bioinformatics
bioinformatics summer school 2002
(Univ of) Nijmegen , Nijmegen, The Netherlands
Centre for Molecular and Biomolecular Informatics,
Bioinformatics 1,2,3,4,5
introduction to bioinformatics, aug 18-29, 2003
Norges Teknisk-Naturvitenskapelige Universitet , Norway bioinformatics program
Oxford Univ , UK
Bioinformatics Centre , School of Pathology
OUBC training courses
Part-time Modular MSc in Bioinformatics and regular short professional updating courses, Continuing Professional Development Centre, Oxford Programme in Biosciences
introduction to bioinformatics, three-day course, TBA
mining the knowledge of the new genomes, two-day course, TBA
algorithm design, one-week course, TBA
microarray bioinformatics, july 1-7, 2002; nov 25-29, 2002
genome analysis, nov 18-21, 2002
Pasteur Institute , France
various courses on informatics in biology, Jan-Apr, 2000
Royal Holloway, University of London , UK
MSc in computational biology for genomics and proteomics
(Universite de) Rouen , France
DEGREE: Master professionel de Bioinformatique http://www.univ-rouen.fr/ABISS/MasterBioinfo/
(Universitat des) Saarlandes , Germany
DEGREE: B.S. http://www.uni-saarland.de/de/studium/studienangebot/bioinformatik/
DEGREE: Master of science http://www.uni-saarland.de/de/studium/stud_int/englisch/bioinformatik/ http://www.uni-saarland.de/de/studium/studienangebot/angebot_abschluss/master/bioinformatik/
COURSE : http://zbi-www.bioinf.uni-sb.de/teaching/courses
(Univ of) Skovde , Sweden
CS
DEGREE: (one year) Master http://his.se/bioinformatics
Stockholm Univ , Sweden
Arne Elofsson,
structural biochemistry and bioinformatics, oct 1999-jan 2000;
bioinformatics, may-june 1999
Technical Univ of Denmark , Denmark
Steen Knudsen, Geeske de Witte Vestergaard
Center for Biological Sequence Analysis courses
(Univ of) Ulster F137PC: MSc bioinformatics
F536PC: PG Dip bioinformatics F138PC: PG Dip bioinformatics
Uppsala Univ , Sweden
Mats Gustafsson, Helena Danielson, Gerard Kleywegt
990304 (molecular bioinformatics), 2000, 1999 ;
Linnaeus Centre for Bioinformatics
bioinformatics, aug-oct 1999 ;
basics of bioinformatics ;
distance course in bioinformatics, 1999;
EMBO practical course: from genome sequences to protein structures, 1999
(Universiteit) Utrecht , The Netherlands Msc program in theoretical biology and bioinformaticcs
(Univ of) Valencia, Spain
Andres Moya Simarro, Fernando Gonzalez Candelas
Curso nacional de bioinformatica y biocomputacion,
Fernando Gonzalez Candelas
Analisis de secuencias de acidos nucleicos, 1997-1998
(Univ of) Wales College of Medicine, UK MSc/Postgraduate Diploma/Postgraduate Certificate (bioinformatics, genetic epidemiology and bioinformatics)
(Univ of) York , UK
DEGREE: Master of Research in Computational Biology,http://www.york.ac.uk/biology/masters/cb

Denmark

Belgium

Inter-University DEA/DES (Masters program in Bioinformatics)
Katholieke Universitiet (Masters program in Bioinformatics)

Switzerland

Swiss Institute of Bioinformatics (Masters program)

Austria

Bioinformatics at the Institute of Biomedical Engineering, Graz University of Technology

Israel

Weizmann Institute (Online course materials)

New Zealand

University of Auckland, New Zealand (BSc (Hons) in bioinformatics)
(Univ of) Otago , New Zealand
DEGREE: Bioinformatics is not at present taught as a separate degree course, but as integral components of other courses in Biology. Mathematics, Computer and Information Sciences
http://mrna.otago.ac.nz/Bioinfo/Bioinfo_teaching.html
Massey University, New Zealand
DEGREE: Bachelor of Science (Bioinformatics)
(Univ of) Auckland , Auckland, New Zealand
INSTITUTE: http://www.bioinformatics.org.nz/

Australia

La Trobe University (Basic course)
University of Melbourne (Bioinformatics stream within BSc degree)
University of Otago - Dunedin, New Zealand (Basic courses)
University of Queensland (3rd-year course)
University of Sydney (BSc program)
University of New South Wales (Bachelor of Engineering in Bioinformatics Programme)
Flinders University (Bachelor's Programme in Bioinformatics)
Australian National University , Canberra, Australia
DEGREE: Bachelor of Computer Science with a BioInformatics Emphasishttp://wwwmaths.anu.edu.au/study/bcomptlsci/bioinformatics.html
Central Queensland University , Rockhampton, Australia
DEGREE: Bachelor of Information Technology (Bioinformatics)http://handbook.cqu.edu.au/Handbook/programs_2.jsp?s=2&code=CQ08
Curtin University of Technology , Perth, Australia
DEGREE: Graduate Certificate in Applied Bioinformaticshttp://handbook.curtin.edu.au/courses/30/301135.html
Flinders Univ , Adeliade, Australia
DEGREE: Bachelor of Science in Bioinformatics and Molecular Biology (no new students in 2006) http://www.flinders.edu.au/calendar/vol2/ug/BScBioinf.htm CA Abbott
BINF 2201 (bioinformatics 2)
La Trobe University , Latrobe, Australia
DEGREE: Bachelor of Bioinformatics/Bachelor of Sciencehttp://www.latrobe.edu.au/biochemistry/bioinformatics/index.html
DEGREE: Master of Biotechnology and Bioinformaticshttp://www.latrobe.edu.au/biochemistry/mastersinbiotech/index.html
(Univ of) Melbourne, Melbourne, Australia
DEGREE: BCs with concentration in Bioinformaticshttp://www.cs.mu.oz.au/courses/ugrad/bcsbioinf.html
(Univ of) Queensland , Australia
DEGREE: Bioinformatics in the Bachelor of Biotechnologyhttp://www.uq.edu.au/study/plan.html?acad_plan=BIOINX2055
RMIT University , Melbourne, Australia
(Univ of) Southern Queensland Australia
DEGREE: Bachelor of BioInformatics
(Univ of) Western Australia , Australia
DEGREE: Bachelor of Science (Informatics)
(Univ of) Wollongong , Australia
DEGREE: Bachelor of Computer Bioinformatics

Asia & South Pacific

BioInformatics Institute, Singapore (Masters program)
National University of Singapore (Training and workshops)
Nanyang Technological University, Singapore (Master of Science in Bioinformatics)
National Tsing Hua University, Taiwan (Undergraduate course)
University of Hong Kong (Bachelor of Science in Bioinformatics)
University of Malaya, Malaysia (offers BSc & Msc in Bioinformatics)
Kebangsaan University, Malaysia (offers Bachelors of Science (Honours) in Bioinformatics)
Mohammad Ali Jinnah University, Pakistan (offers Bachelor of Science in Bioinformatics)
COMSATS Institute of Technology, Pakistan (offers Bachelor of Science in Bioinformatics)
GC University Faisalabad, Pakistan (offers Bachelor of Science in Bioinformatics)- Thanks Rabeea Rasheed
Academia Sinica , Taiwan Taiwan International Graduate Program: bioinformatics program
Amrita Vishwa Vidya Peetham (Deemed University) , India M.S. in bioinformatics
Chinese University of Hong Kong , Hong Kong, China
Dept of Biology
BIO4330 (bioinformatics and proteomics)
Beijing Univ, Beijing, China
(supported by International Centre for Genetic Engineering and Biotechnology)
Xiaocheng Gu, Jingchu Luo, Sandor Ponger, one-week course
molecular biology database and analysis tools, April 6-12, 1999 (broken link)
Introduction to bioinformatics, XiaMen University, Jul 23- Aug 3, 2001.
COURSE : Jingchu Luo: http://abc.cbi.pku.edu.cn/
Huaiqiu Zhu: http://ctb.pku.edu.cn/main/Course.htm
Bioinformatics Institute , Singapore
MSc in bioinformatics
Bioinformatics Institute of India, India
homepage
COMSATS Institute of Information Technology , Pakistan bachelor of science in bioinformatics
(The) Global Open University at Nagaland, India
DEGREE: M. Phil in Bioinformatics
http://nagaland.net.in/new_page_4.htm
(Univ of) Hong Kong , Hong Kong, China
DEGREE: Bachelor of Science in Bioinformatics http://www.hku.hk/bruhk/bscbioinf.htmljoint degree program by Dept of Biochemistry and Dept of Computer Science and Information.
Indian Institute of Chemical Technology ,Tarnaka, Hyderabad, India
advanced diploma in bioinformatics
Indian Institute of Information Technology , Allahabad, India
COURSES: http://bi.iiita.ac.in/
DEGREES: Master of Technology (BioInformatics) http://iiita.ac.in/inner.php?conf=grad
Institute of Bioinformatics and Applied Biotechnology , Bangalore, India
post graduate diploma courses
Jawaharlal Nehru Univ , India
bioinformatics center
advanced diploma in bioinformatics
KAIST, South Korea Department of BioSystems
BiS531 (bioinformatics), BiS532 (bioinformatics laboratory)
Keio University, Shoman-Fujisawa campus, Japan graduate program in bioinformatics
course list (in Japanese)
Madurai Kamaraj university, India
Bioinformatics Centre , Dept of Biotechnology
Advanced Diploma Course in Bioinformatics
(University of) Malaya , Malaysia
COURSE : http://combi.um.edu.my/
Mohammad Ali Jinnah University , Pakistan bachelor of science in bioinformatics
Nanyang Technological University, Singapore School of Computer Engineering
DEGREE: MSs http://www.ntu.edu.sg/SCE/msc-bioinformatics-intro.asp
National Dong Hwa University , Taiwan bioinformatics program
National Taiwan Normal University , Taiwan bioinformatics program
National Tsing Hua Univ , Taiwan
JK Huang, PC Lyu
LS4643 (bioinformatics) ; LS5650 (biodatabase)
National University of Singapore , Singapore
COURSE : http://www.comp.nus.edu.sg/~wongls/bp/courses.html
National Yang Ming Univ , Taiwan
Ueng-Cheng Yang,
bioinformatics master program (in Chinese)
Pune Univ , India
AS Kolaskar, RR Joshi
BI101-105,201-205 (advanced diploma courses in bioinformatics)
St. Joseph's College of Information Technology and Management Studies, Kerala State, IndiaMaster of Science in Bio Informatics (M.Sc BI)

Africa

Rhodes University, South Africa offers an MSc. in Bioinformatics and Computational Molecular Biology
South African National Bioinformatics Institute (SANBI), offers an MSc. in Bioinformatics
Arab League Educational, Culture and Scientific Organisation , Egypt
Robert Harper, Alessio Giacomini, Fredj Tekaia, M Mansour
bioinformatics, Nov 27- Dec 3, 199?
Bionet Africa , Kenya training workshop on bioinformatics/computational biology, Sept 24-25, 2002
Centre de Biotechnologie de Sfax, Sfax, Tunisia
Bioinformatics and genome data analysis: March 24 - April 2, 2000
(Univ of) Ibadan , Nigeria
west African bioinformatics training course, May 26-June 7, 2003
(Institut) Pasteur Tunis, Tunisia
A Benkahla, F Tekaia, A Rebai, E Yeramian
Bioinformatics and Comparative Genome Analysis course, March 18-April 7, 2007
(Univ of) Sfax , Tunisia
F Tekaia, A Rebai, H Haj Kacem, S Abdelhak, N Louhichi, H Ayadi
introduction to bioinformatics, May 26-31, 2003
(Univ of) Western Cape , South Africa
MSc and PhD programmes in Bioinformatics
Stanford/South Africa Bio-medical Informatics Programme
Winston Hide, South African National Bioinformatics Institute
introduction to bioinformatics
Regional training course on bioinformatics applied to tropical diseases In Africa , March 19 - April 4, 2003

Others:

(The) Hebrew University of Jerusalem , Jerusalem, Israel Hanah Margalit, Mol Genetics and Biotech
72677 (bioinformatics: computational sequence analysis of biological macromolecules)
67305 (research methods in computational biology)
Technion, Israel
Benny Chor, Computer Science (CS)
236606 (algorithms for computational biology), 1998
(Univ of) Tehran , Iran Iran Bioinformatics Center
International training course: computer application in molecular biology, September 7-13, 2002
Tel Aviv Univ , Israel
Ron Shamir, CS
0368-4137-01 (analysis of gene expression data, DNA chips and gene networks, Spring 2002 ,
0368.4020.01 (algorithms in molecular biology), Fall 1998
Racheli Kreisberg-Zakarin
Bioinformatics, Spring 2000
Weizmann Institute of Science, Israel
introductory computer course for the life sciences ;
Vered Chalifa-Caspi, Jaime Prilusky,
programming course for bioinformatics and internet (I) ;
Jaime Prilusky, Marilyn Safran,
programming course for bioinformatics and internet (II) ;
Gustavo Glusman, Michael Rebhan
bioinformatics & computational genomics, Spring 1998

Advanced Courses and Papers

BioInformatics Institute, Singapore (Ph.D Program)
Bibliography on Computational Gene Recognition (Rockefeller University)
Evaluating Regularizers for Estimating Distributions of Amino Acids (Paper by Kevin Karplus, UC Santa Cruz)
Iowa State University, PhD Program in Bioinformatics and Computatinal Biology (Ames, Iowa)
Perl Programing Course for Bioinformatics and Internet (Weizmann Institute of Science, Israel)
Rutgers University, PhD Program in Computational Biology (Newark, New Jersey)
Sequence Alignment and Modeling System (Documentation for SAM)
Technical University of Denmark, PhD Course in Biological Sequence Analysis and Protein Modeling
Training Program for Bioinformaticians in Health Research - Vancouver (M.Sc. and Ph.D. Programs)
University of Pennsylvania (Doctoral Program and Postdoctoral Program )
USC (PhD Program)
Virtual School of Natural Sciences (Online Courses)
De Montfort University, U.K, BioHealth Informatics research team offers MPhil and PhD studies in various computational biology and health related subjects

If your university is not there in the list, please let me know info_at_bioinformaticsonline.com

Breeding Insight

BioStar — Wed, 06 Jan 2021 19:49:21 -0600

Breeding Insight at Cornell University will leverage recent improvements in genomics and open source informatics components, and in partnership with small breeding programs, will enable these programs to harness powerful digital tools to accelerate their genetic gains

Breeding Insight is funded by the U.S. Department of Agriculture (USDA) Agricultural Research Service (ARS) through Cornell University. The USDA ARS delivers scientific solutions to national and global agricultural challenges. As a global leader in agricultural discovery through scientific excellence, ARS is committed to delivering cutting-edge, scientific tools and innovative solutions for American farmers, producers, industry, and communities to support the nourishment and well-being of all people; sustaining our nation’s agroecosystems and natural resources; and ensuring the economic competitiveness and excellence of our agriculture.

Address of the bookmark: https://www.breedinginsight.org/

XAMPP: Starting Apache fail Ubuntu

Ram Yash Pal — Sat, 07 Jun 2014 05:52:35 -0500

Once you install XAMMP on linux, the most common problem you face is Apache failure. To fix the issues please use following command to first stop and then again start it.

sudo /etc/init.d/apache2 stop

sudo /etc/init.d/mysql stop

sudo /etc/init.d/proftpd stop

sudo /opt/lampp/lampp start

PhpMyAdmin “Wrong permissions on configuration file, should not be world writable!”

Once the Xammp is installed, it might be possible to set up the configuration file in writable mode. Try the following steps:

Just chmod 0755 the file

sudo chmod 0755 config.inc.php