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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/21443?offset=580</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</guid>
	<pubDate>Mon, 07 Mar 2016 05:18:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</link>
	<title><![CDATA[Efficient genome searching with Biostrings and the BSgenome data package]]></title>
	<description><![CDATA[<p>Address of the bookmark: <a href="https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf" rel="nofollow">https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf</a></p>]]></description>
	<dc:creator>Aasha</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27555/phd-at-institute-of-life-sciences-bhubaneswar</guid>
  <pubDate>Mon, 30 May 2016 03:36:04 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD at INSTITUTE OF LIFE SCIENCES, Bhubaneswar]]></title>
  <description><![CDATA[
<p>INSTITUTE OF LIFE SCIENCES</p>

<p>Bhubaneswar 751023</p>

<p>Advt No. 07/2016</p>

<p>Institute of Life Sciences (ILS), Bhubaneswar, an autonomous Institute of the Department of Biotechnology, Ministry of Science &amp; Technology, Government of India engaged in advanced research invites applications from Indian nationals for the Ph.D. program. The main focus of the projects will be computational biology in the following areas.</p>

<p>S. No. Area of Research Principal investigator</p>

<p>1. Computational Cancer Biology Dr. Anshuman Dixit</p>

<p>2. Immunogenomics &amp; Systems Biology Dr. Sunil Kumar Raghav</p>

<p>3. Chromatin remodeling and hematopoiesis Dr. Punit Prasad</p>

<p>Candidates are strongly encouraged to visit ILS webpage for detailed information, regarding the research activities of the above mentioned scientists.</p>

<p>Essential Qualifications:</p>

<p>(a) Eligibility: M.Sc., M.V.Sc., M.Pharm., M.S. Pharma. (with NET/GATE/GPAT/BINC/any other equivalent national level exam) or M.Tech with minimum of 60% marks (or equivalent grade point). Those awaiting final result may also apply.</p>

<p>Applications received after the last date will not be accepted. The envelope should clearly be superscribed with “Application for Ph.D. program (computational biology)”. Short-listed candidates selected for the interview will be published in the Institute website (www.ils.res.in).</p>

<p>Application Fees: Applicants except SC/ST candidates are required to send a non-refundable D.D. for Rs.100/- in favour of “Director, Institute of Life Sciences, Bhubaneswar” payable at Bhubaneswar along with duly filled-in application form by the date mentioned below. Director, ILS reserves the right to withdraw the procedure without assigning any reasons thereof.</p>

<p>Important dates: </p>

<p>Last date of receiving applications: 24th June 2016 </p>

<p>Date of display of short-listed candidates and instructions on the Institute website: 30th June 2016 </p>

<p>Date of interview: The interview will be organized on 25th July 2016</p>

<p>Advertisement: https://www.ils.res.in/wp-content/uploads/2016/05/advt07-16.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26852/awesome-bioinformatics-pipelines</guid>
	<pubDate>Wed, 30 Mar 2016 21:50:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26852/awesome-bioinformatics-pipelines</link>
	<title><![CDATA[Awesome bioinformatics pipelines !]]></title>
	<description><![CDATA[<p><span>A curated list of awesome pipeline toolkits ...</span></p>
<p><span>https://github.com/pditommaso/awesome-pipeline</span></p><p>Address of the bookmark: <a href="https://github.com/pditommaso/awesome-pipeline" rel="nofollow">https://github.com/pditommaso/awesome-pipeline</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27427/rcircos-an-r-package-for-circos-2d-track-plots</guid>
	<pubDate>Fri, 20 May 2016 11:01:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27427/rcircos-an-r-package-for-circos-2d-track-plots</link>
	<title><![CDATA[RCircos: an R package for Circos 2D track plots]]></title>
	<description><![CDATA[<p>RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to generate complex Circos images.</p>
<p>More at https://bitbucket.org/henryhzhang/rcircos/src</p><p>Address of the bookmark: <a href="https://bitbucket.org/henryhzhang/rcircos/src" rel="nofollow">https://bitbucket.org/henryhzhang/rcircos/src</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27463/bpipe-a-tool-for-running-and-managing-bioinformatics-pipelines</guid>
	<pubDate>Sat, 21 May 2016 22:42:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27463/bpipe-a-tool-for-running-and-managing-bioinformatics-pipelines</link>
	<title><![CDATA[Bpipe - a tool for running and managing bioinformatics pipelines]]></title>
	<description><![CDATA[<p>Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'.</p>
<ul>
<li>January 20th, 2016 - New! Bpipe 0.9.9 released!</li>
<li>Download <a href="http://download.bpipe.org/versions/bpipe-0.9.9.tar.gz">latest</a>, <a href="http://download.bpipe.org">all</a></li>
<li><a href="http://docs.bpipe.org">Documentation</a></li>
<li><a href="https://groups.google.com/forum/#%21forum/bpipe-discuss">Mailing List</a> (Google Group)</li>
</ul>
<p>Bpipe has been published in <a href="http://bioinformatics.oxfordjournals.org/content/early/2012/04/11/bioinformatics.bts167.abstract">Bioinformatics</a>! If you use Bpipe, please cite:</p>
<p><em>Sadedin S, Pope B &amp; Oshlack A, Bpipe: A Tool for Running and Managing Bioinformatics Pipelines, Bioinformatics</em></p><p>Address of the bookmark: <a href="http://docs.bpipe.org/" rel="nofollow">http://docs.bpipe.org/</a></p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28855/vcfr</guid>
	<pubDate>Fri, 19 Aug 2016 07:38:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28855/vcfr</link>
	<title><![CDATA[vcfR]]></title>
	<description><![CDATA[<p><span>Most variant calling pipelines result in files containing large quantities of variant information. The&nbsp;</span><a href="http://samtools.github.io/hts-specs/" title="VCF format at hts-specs">variant call format (vcf)</a><span>&nbsp;is an increasingly popular format for this data. The format of these files and their content is discussed in the vignette &lsquo;vcf data.&rsquo; These files are typically intended to be post-processed (i.e., filtered) as an attempt to remove false positives or otherwise problematic sites. The R package vcfR provides tools to facilitate this filtering as well as to visualize the effects of choices made during this process.</span></p><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/vcfR/vignettes/visualization_1.html" rel="nofollow">https://cran.r-project.org/web/packages/vcfR/vignettes/visualization_1.html</a></p>]]></description>
	<dc:creator>Archana Malhotra</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29583/graph-genome-suite</guid>
	<pubDate>Fri, 28 Oct 2016 07:59:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29583/graph-genome-suite</link>
	<title><![CDATA[Graph Genome Suite]]></title>
	<description><![CDATA[<p><span>Seven Bridges is the biomedical data analysis company accelerating breakthroughs in genomics research for cancer, drug development and precision medicine. We build self-improving systems to analyze millions of genomes, including the&nbsp;</span><strong>Graph Genome Suite</strong><span>&nbsp;&mdash; the most advanced population genomics tools in the world.</span></p><p>Address of the bookmark: <a href="https://www.sbgenomics.com/graph/" rel="nofollow">https://www.sbgenomics.com/graph/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29603/statistical-for-biological-research</guid>
	<pubDate>Thu, 03 Nov 2016 04:59:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29603/statistical-for-biological-research</link>
	<title><![CDATA[Statistical for biological research]]></title>
	<description><![CDATA[<p>There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late.</p>
<p>This collection highlights important statistical issues that biologists should be aware of and provides practical advice to help them improve the rigor of their work.</p>
<p><em>Nature Methods</em>' <strong><a href="http://www.nature.com/collections/qghhqm/pointsofsignificance">Points of Significance</a></strong> column on statistics explains many key statistical and experimental design concepts. <strong><a href="http://www.nature.com/collections/qghhqm/resources">Other resources</a></strong> include an online plotting tool and links to statistics guides from other publishers.</p><p>Address of the bookmark: <a href="http://www.nature.com/collections/qghhqm" rel="nofollow">http://www.nature.com/collections/qghhqm</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29628/links</guid>
	<pubDate>Fri, 04 Nov 2016 06:19:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29628/links</link>
	<title><![CDATA[LINKS]]></title>
	<description><![CDATA[<p>LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft genomes, etc)</p>
<p>Paper at&nbsp;https://gigascience.biomedcentral.com/articles/10.1186/s13742-015-0076-3</p><p>Address of the bookmark: <a href="https://github.com/warrenlr/LINKS/" rel="nofollow">https://github.com/warrenlr/LINKS/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29644/junior-research-fellow-at-rajiv-gandhi-centre-for-biotechnology-thiruvananthapuram</guid>
  <pubDate>Mon, 07 Nov 2016 10:27:06 -0600</pubDate>
  <link></link>
  <title><![CDATA[Junior Research Fellow at Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram]]></title>
  <description><![CDATA[
<p>Adv. # 22/ 2016<br />Applications are invited from suitable candidates for one position of Junior Research Fellow in a DST funded bioinformatics research project entitled "Major gene influxes in microbial genome evolution" in the Laboratory of Dr. Shijulal Nelson-Sathi at Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram.</p>

<p>ESSENTIAL QUALIFICATIONS:<br />We are looking for a motivated candidate with keen interest in bioinformatics and microbial genome evolution. The candidate must have a Master’s Degree in Bioinformatics, Computational Biology, Computer Science, Microbiology, Biology or a related field with good academic record.</p>

<p>DESIRABLE QUALIFICATIONS<br />Hands on research experience on handling next generation sequencing data and phylogenetic reconstruction methods. Excellent programming skills (Perl/Python/Java/Php) and experience in working on Unix/Linux platform is preferred. Furthermore; good knowledge is required in statistics (R/Matlab) and the application of bioinformatics analysis tools.</p>

<p>AGE:<br />Below 28 years as on 15th November, 2016.</p>

<p>EMOLUMENTS:<br />Rs. 25,000 + 20% HRA for NET/GATE qualified and Post Graduate in Professional Degree course qualified candidates and <br />Rs. 12,000/- + 20% HRA for others.</p>

<p>DURATION:<br />Initial appointment will be given for one year and further extension will be based on the performance till termination of the project.<br />Only those fulfilling the above criteria need apply and will be called for interview. In the event of more than 10 candidates being short-listed by screening the applications, a written test will be conducted before the selection interview and only those who are successful in the written test will be interviewed. No TA/ DA will be given for appearing in the interview.</p>

<p>Suitably qualified candidates may send applications in the prescribed format (Download here) with a photograph, a copy of full resume indicating the percentage of Marks obtained and attested photocopies of credentials &amp; experience to reach the undersigned on or before 15th November, 2016. Envelopes must be superscripted with abbreviated title of the project, advertisement number and job title. Selection to the position will not entitle the candidate to any future positions at RGCB (permanent or otherwise). As with all project positions at RGCB, the position will be co terminus with end of the project.</p>
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