<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/21703?offset=550</link>
	<atom:link href="https://bioinformaticsonline.com/related/21703?offset=550" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12111/internship-program-with-arraygen-technolgies</guid>
  <pubDate>Sun, 22 Jun 2014 23:18:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Internship program with ArrayGen Technolgies]]></title>
  <description><![CDATA[
<p>Internship Program for Bioinformatics / Biotechnology Professionals Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis. Applications are accepted throughout the year. Accepted students will be listed on web with their schedules. Accepted students can attend our future workshops and trainings freely at the specified venue.</p>

<p>Interested candidates may email their resume along with a cover letter to careers@arraygen.com</p>

<p>Official website: http://www.arraygen.com/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44601/free-resources-to-learn-statistics</guid>
	<pubDate>Sat, 06 Jul 2024 10:30:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44601/free-resources-to-learn-statistics</link>
	<title><![CDATA[Free resources to learn statistics]]></title>
	<description><![CDATA[<p><span>Welcome to the course notes for&nbsp;</span><span>STAT 414: Introduction to Probability Theory</span><span>. These notes are designed and developed by Penn State's&nbsp;</span><a href="https://science.psu.edu/stat">Department of Statistics</a><span>&nbsp;and offered as open educational resources. These notes are free to use under Creative Commons license&nbsp;</span><a href="https://creativecommons.org/licenses/by-nc/4.0/">CC BY-NC 4.0</a><span>.</span></p>
<p>&nbsp;</p>
<p>A free online version of the second edition of the book based on Stat 110,&nbsp;<em>Introduction to Probability</em>&nbsp;by Joe Blitzstein and Jessica Hwang,&nbsp;is now available at&nbsp;<a href="http://probabilitybook.net/" title="http://probabilitybook.net">http://probabilitybook.net</a></p>
<p>Print copies are available via&nbsp;<a href="https://www.crcpress.com/Introduction-to-Probability-Second-Edition/Blitzstein-Hwang/p/book/9781138369917" title="">CRC Press</a>,&nbsp;<a href="https://amzn.to/2Ubh7D8" title="">Amazon</a>, and elsewhere.&nbsp;</p>
<p>Stat110x is also available as an&nbsp;edX course.&nbsp;Free signup at&nbsp;<a href="https://www.edx.org/course/introduction-to-probability-0" title="https://www.edx.org/course/introduction-to-probability-0">https://www.edx.org/course/introduction-to-probability-0</a></p>
<p>The edX course focuses on animations, interactive features, readings, and problem-solving, and&nbsp;is&nbsp;<strong>complementary</strong>&nbsp;to the Stat 110 lecture videos on YouTube, which are available at&nbsp;<a href="https://goo.gl/i7njSb" title="https://goo.gl/i7njSb">https://goo.gl/i7njSb</a></p>
<p>The Stat110x animations are available within the course and at&nbsp;<a href="https://goo.gl/g7pqTo" title="">https://goo.gl/g7pqTo</a></p>
<p><a href="https://projects.iq.harvard.edu/stat110/home">https://projects.iq.harvard.edu/stat110/home</a>&nbsp;</p><p>Address of the bookmark: <a href="https://online.stat.psu.edu/stat414/" rel="nofollow">https://online.stat.psu.edu/stat414/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12566/jrf-at-national-research-centre-on-plant-biotechnology</guid>
  <pubDate>Fri, 04 Jul 2014 13:36:02 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF at NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY]]></title>
  <description><![CDATA[
<p>NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY</p>

<p>New Delhi-110012</p>

<p>Walk in interview</p>

<p>Eligible candidates may appear for Walk-in interview for the temporary positions of JRF/SRF/ RA, in ICAR, DBT funded research projects. Positions are purely temporary in nature and are co-terminus with the projects. The initial appointment will be for maximum one year, which can be extended on the basis of assessment of the candidate performance and need in the project work (PI-Dr. N. K. Singh, National Professor).</p>

<p>Name of the</p>

<p>PI (Project)<br />	</p>

<p>Name of</p>

<p>Position<br />	</p>

<p>Number of</p>

<p>positions<br />	</p>

<p>Emoluments</p>

<p>Fixed per</p>

<p>month (Rs.)<br />	</p>

<p>Essential</p>

<p>Qualifications</p>

<p>DBT-“Physical Mapping and Sample sequencing of Wheat Chromosome 2A- International Wheat Genome Sequencing Consortium (India)”.</p>

<p>(Up to Nov,2014)</p>

<p>DBT- Identification and functional analysis of genes related to yield and biotic stresses (Up to Oct,2014)</p>

<p>NPTC-Central Facility<br />	</p>

<p>RA (Master)</p>

<p>JRF/SRF</p>

<p>Research Associate: One</p>

<p>Essential: MCA or M. Tech. (Bioinformatics and computer Science with 2 years experience in Database Management with</p>

<p>MySQL, Linux)</p>

<p>Desirable: Proficiency in handling of large biological databases</p>

<p>Age limit: Max. Age 35 years (Age of relaxation of 5 years for SC/ST&amp; woman. and 3 years for OBC). The interview will be held on 08 July, 2014 at 11 am at room no. 39, NRCPB, LBS Building, Pusa Campus, New Delhi-110012. The candidates must bring original certificates and four copies of biodata, and recent passport size photograph. No TA/DA would be given for the appearance in interview. Only the candidates having essential qualifications would be entertained for the interviews.</p>

<p>Advertisement:</p>

<p>www.nrcpb.org/sites/default/files/news%20paper%20advirtisment..docx</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/36427/php-mysql-ajax-wordpress-jquery-api-integration-xml-parsingjson-parsingcodeigniter</guid>
	<pubDate>Sun, 29 Apr 2018 01:03:17 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/36427/php-mysql-ajax-wordpress-jquery-api-integration-xml-parsingjson-parsingcodeigniter</link>
	<title><![CDATA[PHP, MySQL, AJAX, Wordpress, jQuery, API integration, xml parsing,json parsing,CodeIgniter]]></title>
	<description><![CDATA[<p>My name is Ram Yash Pal. I&rsquo;m web developer. I have 5+ years of experience on web development, specially on developing large scale web application with complex business logic.<br /><br /><span>My main expertises are on PHP, jQuery, Ajax, CodeIgniter, Wordpress Plugin Development and Wordpress theme customization.</span></p><p>PHP, MySQL, AJAX, Wordpress, jQuery, API integration, xml parsing,json parsing,CodeIgniter</p><p>https://phpajaxhtml.blogspot.in/</p>]]></description>
	<dc:creator>Ram Yash Pal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12988/guest-lecturer-molecular-biology-bioinformatics</guid>
  <pubDate>Wed, 23 Jul 2014 13:34:41 -0500</pubDate>
  <link></link>
  <title><![CDATA[Guest Lecturer - Molecular Biology &amp; Bioinformatics]]></title>
  <description><![CDATA[
<p>Adv. No. F.TU/ACA/GT-APP/01/14 Date: 07.07.2014</p>

<p>Faculty of Science</p>

<p>Essential Qualifications:</p>

<p>(i) Good academic record having at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed) at the Master’s Degree level in a relevant subject, from an Indian University, or an equivalent degree from an accredited foreign University.</p>

<p>(II) Besides fulfilling the above qualifications, the candidates must have cleared the National Eligibility Test (NET) conducted by the UGC, CSIR or similar test accredited by the UGC like SLET/SET.</p>

<p>(III) Notwithstanding anything contained in sub-clauses (i) and (ii) of clause 4.4.1 of UGC regulations 2010, candidates, who are, or have been awarded a Ph.D. Degree in accordance with the University Grants Commission (Minimum Standards and Procedure for Award of Ph.D. Degree) Regulations, 2009, shall be exempted from the requirement of the minimum eligibility condition of NET/ SLET/ SET for engagement of guest Teacher.</p>

<p>(IV) NET/ SLET/ SET shall also not be required for such Master’s Degree Programmes in discipline for which NET/ SLET/ SET is not conducted.</p>

<p>Application form along with detailed instructions can be downloaded from Tripura University website: www.tripurauniv.in. The duly filled in application forms complete in all respects may be sent so as to reach the Office of the Deputy Registrar Academic Branch, Tripura University, Suryamaninagar - 799022, Tripura on or before 31st July, 2014. The Candidates who responded against advertisement No. TU.REG/N-Advt./02/10 dated 20.02.2014 need not apply again.</p>

<p>For more info visit: http://www.tripurauniv.in/images/universitymedia/EmploymentNotification/Guest%20Teacher%20Advt.%20website_09072014.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/34791/what-programming-language-do-you-hate-the-most</guid>
	<pubDate>Sat, 23 Dec 2017 03:46:49 -0600</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/34791/what-programming-language-do-you-hate-the-most</link>
	<title><![CDATA[What programming language do you hate the most?]]></title>
	<description><![CDATA[<p>There are many programming languages, which one you dislike the most?</p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/14215/the-8000-years-old-tibetian-gene-mutation</guid>
	<pubDate>Wed, 20 Aug 2014 21:57:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/14215/the-8000-years-old-tibetian-gene-mutation</link>
	<title><![CDATA[The 8000 years old Tibetian gene mutation !!!]]></title>
	<description><![CDATA[<p>A new study has provided insight into how gene mutation around 8,000 years ago helped Tibetans' to survive in the thin air on the Tibetan Plateau, where an average elevation is of 14,800 feet.<br /><br />A study led by University of Utah scientists is the first to find a genetic cause for the adaptation, a single DNA base pair change that dates back 8,000 years and demonstrate how it contributes to the Tibetans' ability to live in low oxygen conditions.</p><p>About 8,000 years ago, the gene EGLN1 changed by a single DNA base pair. Today, a relatively short time later on the scale of human history, 88 percent of Tibetans have the genetic variation, and it was virtually absent from closely related lowland Asians. The findings indicate the genetic variation endows its carriers with an advantage.<br /><br />In those without the adaptation, low oxygen caused their blood to become thick with oxygen-carrying red blood cells, an attempt to feed starved tissues, which could cause long-term complications such as heart failure. The researchers found that the newly identified genetic variation protected Tibetans by decreasing the over-response to low oxygen.</p><p>Reference: http://www.nature.com/nature/journal/v512/n7513/abs/nature13408.html</p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/37592/benchmarking-perl-module</guid>
	<pubDate>Sat, 25 Aug 2018 11:40:42 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/37592/benchmarking-perl-module</link>
	<title><![CDATA[Benchmarking Perl Module !]]></title>
	<description><![CDATA[<p>The benchmark module is a great tool to know the time the code takes to run. The output is usually in terms of CPU time. This module provides us with a way to optimize our code. With the advent of petascale computing and other multicore processor it is becoming a neccesity to know about the CPU time taken by our perl program.</p><p>This is the simple way to use the module</p><blockquote><p>Example1:</p><p>use Benchmark;</p><p>$first_time = Benchmark-&gt;new;</p><p>our code&hellip;&hellip;</p><p>$second_time = Benchmark-&gt;new;</p><p>$final_difference = timediff($first_time,$second_time);</p><p>print &ldquo;the code took, timestr($final_difference),&rdquo;\n&rdquo;;</p></blockquote><p>that was a very simple way to know the time diff , we can use it to know the time taken by some part of the code in the program.</p><blockquote><p>More sophisticated way:</p><p>use Benchmark;<br />sub first {</p><p>my(arguments) = @_;</p><p>}</p><p>timethese(100, { first =&gt; &lsquo;first_sub(arguments)&rsquo;});</p><p>The first argument to timethese is 100 (evaluate 100 times).</p></blockquote><p>Hope this very small tutorial with Benchmark will help people get started.</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12936/assistant-professor-medical-bioinformatics</guid>
  <pubDate>Wed, 23 Jul 2014 05:00:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor - Medical Bioinformatics]]></title>
  <description><![CDATA[
<p>Advt. No : ME-I/A-IV/03/14</p>

<p>No.of Posts:01 (SC)</p>

<p>Pay Scale:</p>

<p>Pay Band of Rs.15600-39100 + Rs.6000/- GP +NPA @ 25% of Basic Pay +Learning Resource Allowance @ Rs.20,000/-P.A.+ Conveyance Allowance @ Rs. 1650/-P.M.+ Academic Allowance @ Rs.2500/- P.M. and other admissible allowances.</p>

<p>Qualifications:</p>

<p>Area of Specialization:-</p>

<p>Bioinformatics/Computational/Biology/Genomics/ Proteomics/ Structural Biology</p>

<p>1. Postgraduate qualification, e.g. Master’s Degree in Biotechnology/Bioinformatics/ Biophysics.</p>

<p>2. A Doctorate Degree of recognized University/Institute in a basic or allied Medical Science subject e.g. Medical Biotechnology/Biophysics. Bioinformatics/X-ray Crystallography/</p>

<p>Immunology/Structural Biology etc</p>

<p>Experience:</p>

<p>1.Minimum three years teaching and/or research experience in a recognized medical/research Institution in an allied medical subject after obtaining doctorate degree and preferably in Medical</p>

<p>Molecular Biology/ Biophysics/Structural Biology/Genomics and Clinical Proteomics/Computational Biology.</p>

<p>2. Minimum two publication with atleast one in international journal and atleast one as first author</p>

<p>Desirable:-</p>

<p>Consistently excellent scholastic/academic record, demonstrated ability to write grant proposal/(s) successfully, Post Doctoral training in a frontier area of medical Bioinformatics Research and of direct relevance to clinical diagnosis or patient care (preferably from a recognized top-ranking medical institution abroad)</p>

<p>Send your applications to O/O, Deputy Registrar, Recruitment &amp; Establishment Cell, University of Health Sciences, Rohtak by 08.7.2014</p>

<p>For more details,please visit website:http://pgimsrohtak.nic.in/2014%20AP%20Advt.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/42003/perl-one-liner-for-beginners</guid>
	<pubDate>Fri, 24 Jul 2020 05:58:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/42003/perl-one-liner-for-beginners</link>
	<title><![CDATA[Perl one-liner for beginners !]]></title>
	<description><![CDATA[<p>I often use the following arguments to perl:</p><ul>
<li>-e Makes the line of code be executed instead of a script</li>
<li>-n Forces your line to be called in a loop. Allows you to take lines from the diamond operator (or stdin)</li>
<li>-p Forces your line to be called in a loop. Prints $_ at the end</li>
</ul><p>&nbsp;</p><ul>
<li>This counts the number of quotation marks in each line and prints it
<div>
<blockquote>
<div>perl -ne&nbsp;'$cnt = tr/"//;print "$cnt\n"'&nbsp;inputFileName.txt</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>Adds string to each line, followed by tab
<div>
<blockquote>
<div>perl -pe&nbsp;'s/(.*)/string\t$1/'&nbsp;inFile &gt; outFile</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>Append a new line to each line
<div>
<blockquote>
<div>perl -pe&nbsp;'s//\n/'&nbsp;all.sent.classOnly &gt; all.sent.classOnly.sep</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>Replace all occurrences of pattern1 (e.g. [0-9]) with pattern2
<div>
<blockquote>
<div>perl -p -i.bak -w -e&nbsp;'s/pattern1/pattern2/g'&nbsp;inputFile</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>Go through file and only print words that do not have any uppercase letters.
<div>
<blockquote>
<div>perl -ne&nbsp;'print unless m/[A-Z]/'&nbsp;allWords.txt &gt; allWordsOnlyLowercase.txt</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>Go through file, split line at each space and print words one per line.
<div>
<blockquote>
<div>perl -ne&nbsp;'print join("\n", split(/ /,$_));print("\n")'&nbsp;someText.txt &gt; wordsPerLine.txt</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>or in other words, delete every character that is not a letter, white space or line end (replace with nothing)
<div>
<blockquote>
<div>perl -pne&nbsp;'s/[^a-zA-Z\s]*//g'&nbsp;text_withSpecial.txt &gt; text_lettersOnly.txt</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>
<div>
<div>perl -pne&nbsp;'tr/[A-Z]/[a-z]/'&nbsp;textWithUpperCase.txt &gt; textwithoutuppercase.txt;</div>
</div>
</li>
</ul><ul>
<li>Print only the second column of the data when using tabular as a separator
<div>
<blockquote>
<div>perl -ne&nbsp;'@F = split("\t", $_); print "$F[1]";'&nbsp;columnFileWithTabs.txt &gt; justSecondColumn.txt</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>
<div>One-Liner: Sort lines by their length
<blockquote>
<div>perl -e&nbsp;'print sort {length $a &lt;=&gt; length $b} &lt;&gt;'&nbsp;textFile</div>
</blockquote>
</div>
</li>
</ul><ul>
<li>One-Liner: Print second column, unless it contains a number
<blockquote>
<div>perl"&gt;perl -lane&nbsp;'print $F[1] unless $F[1] =~ m/[0-9]/'&nbsp;wordCounts.txt</div>
</blockquote>
</li>
</ul>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

</channel>
</rss>