<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/21982?offset=1300 https://bioinformaticsonline.com/news/view/27344/orffinder-with-smart-blast Tue, 17 May 2016 01:43:15 -0500 https://bioinformaticsonline.com/news/view/27344/orffinder-with-smart-blast <![CDATA[ORFfinder with smart BLAST]]> ORF Finder

ORFfinder is a graphical analysis tool for finding open reading frames (ORFs). We’ve been working on a few updates, and we’d like to find out what you think about them. Read on to find out what you can do with the new ORFfinder.

Smart BLAST (https://ncbiinsights.ncbi.nlm.nih.gov/2015/07/29/smartblast/)

Select one or a group of ORFs and BLAST several databases at once, and use the newly developed SmartBLAST to verify protein names. Looking for the traditional results from BLAST? They’re there too.

]]> Jit https://bioinformaticsonline.com/bookmarks/view/27427/rcircos-an-r-package-for-circos-2d-track-plots Fri, 20 May 2016 11:01:13 -0500 https://bioinformaticsonline.com/bookmarks/view/27427/rcircos-an-r-package-for-circos-2d-track-plots <![CDATA[RCircos: an R package for Circos 2D track plots]]> RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to generate complex Circos images.

More at https://bitbucket.org/henryhzhang/rcircos/src

Address of the bookmark: https://bitbucket.org/henryhzhang/rcircos/src

]]> Jit https://bioinformaticsonline.com/file/view/27455/blosum50-matrix Sat, 21 May 2016 22:12:15 -0500 https://bioinformaticsonline.com/file/view/27455/blosum50-matrix <![CDATA[BLOSUM50 Matrix]]> Radha Agarkar