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<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/22133?offset=310</link>
	<atom:link href="https://bioinformaticsonline.com/related/22133?offset=310" rel="self" type="application/rss+xml" />
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10127/assistant-professor-at-sardar-patel-university</guid>
  <pubDate>Mon, 21 Apr 2014 21:03:55 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor at SARDAR PATEL UNIVERSITY]]></title>
  <description><![CDATA[
<p>SARDAR PATEL UNIVERSITY<br />Centre for Interdisciplinary Studies in Science and Technology</p>

<p>No.: SPU/CISST/Advt./2014-15/519</p>

<p>ADVERTISEMENT for Teaching Positions (Contractual)</p>

<p>Applications for the following Contractual Teaching Position are invited for Centre for Interdisciplinary Studies in Science and Technology (CISST), Sardar Patel University:</p>

<p>2. Assistant Professor (ONE) (Contractual)</p>

<p>For the subject of Bioinformatics</p>

<p>Qualifications:</p>

<p>(I) Good academic record as defined by the concerned university with at least 55 % marks (or an equivalent grade in a point scale wherever grading system is followed) at the Master’s level</p>

<p>(II) Ph.D. degree in the concerned subject or in a relevant interdisciplinary subject<br />from an Indian University or NET/SLET clearance Contractual appointment carries a total Fixed Emoluments of Rs. 30,000/- p.m without any assurance of permanent Positions and related benefits.</p>

<p>An Application Form in prescribed Performa, available on University Website: www.spuvvn.edu should be filled in completely in Twelve Copies with self attested copies of certificates of qualifications and experience. Only one copy of each mark sheet be attached with the first copy of the application form. All 12 (Twelve) Application forms should be sent to Registrar’s office along with Demand Draft of Application form fee of Rs. 250/- (Non-refundable) in favour of “REGISTRAR, SARDAR PATEL UNIVERSITY, VALLABH VIDYANAGAR”. The S.C. and S.T. category candidates need not to pay Application fee.</p>

<p>Applicants who are in service should apply through their present employers. Candidates called for interview shall be required to attend at their own cost.</p>

<p>In absence of suitable candidate, the University may relax the eligibility criteria, for conditional appointment.</p>

<p>The last date of receipt of application by the University is 30th April, 2014</p>

<p>Advertisement: www.spuvvn.edu/careers/CISST%20Advt.%20April%202014.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10459/associate-professor-bio-informatics-at-university-of-allahabad-in-allahabad</guid>
  <pubDate>Wed, 07 May 2014 00:26:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Associate Professor - Bio-Informatics at University of Allahabad in Allahabad]]></title>
  <description><![CDATA[
<p>No of vacancies: 01</p>

<p>Pay scale: Pay Band of Rs. 37400-67000 with AGP of Rs. 9000.</p>

<p>i. Educational Qualification: Good academic record with a Ph.D. Degree in the concerned/allied/relevant disciplines.</p>

<p>ii. A Master's Degree with at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed).</p>

<p>iii. A minimum of eight years of experience of teaching and/or research in an academic/research position equivalent to that of Assistant Professor in a University, College or Accredited Research Institution/industry excluding the period of Ph.D. research with evidence of published work and a minimum of 5 publications as books and/or research/policy papers.</p>

<p>iv. Contribution to educational innovation, design of new curricula and courses, and technology - mediated teaching learning process with evidence of having guided doctoral candidates and research students.</p>

<p>v. A minimum score as stipulated in the Academic Performance Indicator (API) based Performance Based Appraisal System (PBAS), set out in UGC Regulation.</p>

<p>Download application form from website: http://www.allduniv.ac.in/</p>

<p>Send your application to the Registrar, University of Allahabad, Allahabad-211002 (U.P.) on or before 30th April 2014</p>

<p>For more details: http://www.allduniv.ac.in/images/adv/backlog/advt-details.pdf OR http://www.allduniv.ac.in/images/news/extension-notice.pdf</p>

<p>Last Apply Date: 30 May 2014</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/10664/dna-replication-process-3d-animation</guid>
	<pubDate>Sat, 10 May 2014 04:41:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/10664/dna-replication-process-3d-animation</link>
	<title><![CDATA[DNA Replication Process [3D Animation]]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/27TxKoFU2Nw" frameborder="0" allowfullscreen></iframe>See an organised list of all the animations: http://doctorprodigious.wordpress.com/hd-animations/]]></description>
	
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10748/bioinformatics-phd-at-cuk-kerala</guid>
  <pubDate>Sat, 10 May 2014 20:21:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics PhD at CUK Kerala]]></title>
  <description><![CDATA[
<p>Applications are invited from highly motivated students (UGC-CSIR-JRF) with a background in Genomics/ Biotechnology/ Molecular Microbiology/ Biochemistry and Bioinformatics to pursue research leading to Ph.D. in the following areas;</p>

<p>    1. Cancer Genomics</p>

<p>    2. Microbial Genetics and Metagenomics</p>

<p>    3. Human Infective Diseases</p>

<p>    4. Computational Drug Design</p>

<p>Interested candidates may apply to Dr. Ranjith N. Kumavath, Assistant Professor &amp; Head, Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Padannakad (PO), Nileshwar, Kasaragod-671328,Kerala. Email: RNkumavath@gmail.com</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/11035/bioinformatics-jrfsrf-position-at-nii</guid>
  <pubDate>Sun, 25 May 2014 16:54:04 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at NII]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF IMMUNOLOGY, NEW DELHI-110067</p>

<p>Applications are invited for the position of Senior Research Fellow for the following time-bound sponsored project as per the details given below:</p>

<p>1. BTIS project on, “Bioinformatics Center-National Infrastructural Facility in the Area of Immunology” funded by DBT</p>

<p>Senior Research Fellow (P) (One Position only)</p>

<p>Dr. Debasisa Mohanty<br />Staff Scientist-VI<br />deb@nii.res.in</p>

<p>Qualifications: M.Sc in Biological Sciences or Biotechnology with at least 04 years of Research experience in Bioinformatics or computational Biology after the master’s degree is essential.</p>

<p>Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications &amp; experience</p>

<p>Rs. 18,000/- per month consolidated plus 30% HRA if Leading to Ph.D/NET/GATE Qualified otherwise Rs. 14,000/- per month + 30% HRA.</p>

<p>Job description: The candidate should be well versed in programming in PERL/C++/HTML/CGI, web server and portal development, computational analysis of<br />protein structure &amp; function, molecular dynamics simulations and use of high performance computing systems.</p>

<p>GENERAL TERMS AND CONDITIONS:-</p>

<p>1. The candidates selected for the above posts will be on contract for one year or duration of the project whichever is shorter, at a time.<br />2. No hostel/ housing facility will be provided.<br />3. Number of posts may vary and shall be need based. Advertisement is no commitment.<br />4. Applicants may clearly mention the category they belong to i.e. SC/ST/OBC/PH and attach documentary proof of the same.<br />5. No TA/DA will be paid for attending the interview, if called for.<br />6. Apart from sending application in the prescribed format given below, candidates should send complete Curriculum Vitae along with the names of three referees. Curriculum Vitae should contain details of the experimental expertise.</p>

<p>HOW TO APPLY Interested candidates may apply directly, STRICTLY IN THE PRESCRIBED FORMAT GIVEN BELOW, through e-mail, to the Investigator of the project, clearly indicating the name of the project along with their complete C.V., e-mail id, fax numbers, telephone numbers. Only Short listed candidates will be called for interview and they required to submit attested copies of all their certificates and a Demand Draft of Rs 100/- drawn on Canara Bank or Indian Bank payable at Delhi/New Delhi in favour of the Director, NII (SC / ST and PH candidates are exempted subject to submission of documentary proof), at the time of interview.</p>

<p>LAST DATE OF RECEIPT OF APPLICATIONS: 06th June, 2014</p>

<p>Advertisement</p>

<p>www1.nii.res.in/sites/default/files/projectappointment-Dr.Mohanty-6June2014.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/13014/bioinformatics-jrf-vacancy-at-icgeb-new-delhi</guid>
  <pubDate>Wed, 23 Jul 2014 16:07:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF vacancy at ICGEB, New Delhi]]></title>
  <description><![CDATA[
<p>Junior Research Fellow for a DBT sponsored project entitled "Computational and experimental characterization of stage specific arginine methylation in P. falciparum proteome". </p>

<p>Candidates should have a 1st class MSc/MTech/BTech degree in Bioinformatics. Please send complete CV, quoting Application for RMETH-JRF-2014, by email to Dr. Dinesh Gupta: dinesh@icgeb.res.in</p>

<p>Closing date for applications: 6 August 2014</p>

<p>More at http://www.icgeb.org/tl_files/Vacancies/JRF.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide</guid>
	<pubDate>Thu, 28 May 2015 21:10:12 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide</link>
	<title><![CDATA[One page R survival guide !!]]></title>
	<description><![CDATA[<p><span style="font-style: normal; color: #000000; float: none;">There any many of the documents have been developed and tested by scientist around the world. I found this one really useful. The data used is available for download as<span>&nbsp;</span></span><a href="http://onepager.togaware.com/data.zip">data.zip</a><span style="font-style: normal; color: #000000; float: none;">.</span></p><p><span style="font-style: normal; color: #000000; float: none;">Reference@http://www.datasciencecentral.com/profiles/blogs/one-page-r-a-survival-guide-to-data-science-with-r</span></p><ul>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Templates for the Data Scientist<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">A Template for Preparing Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/DataO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DataO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">A Template for Building Models:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/ModelsO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ModelsO.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Getting Started as a Data Scientist<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Getting Started with R and Rattle:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/StartL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/StartG.pdf">Laboratory</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Introducing and Interacting with R:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/IntroRL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/IntroRR.pdf">Laboratory</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">BasicR - OnePage(R) - Writing R scripts</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Dealing With Data<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Read Data into R:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/ReadO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ReadO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Explore and Summarise Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/SummaryO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/SummaryO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Transform Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/TransformO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/TransformO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/DateTimeRB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Dealing with Dates and Time:</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/DateTimeR.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/DateTimeR.R">R</a>) Dates and Time</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Visualising Data with GGPlot2:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/GGPlot2O.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/GGPlot2O.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Visualising Data with Maps</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/MapsO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/MapsO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Spatial<span>&nbsp;</span>(R) Spatial Analysis</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Handling Big Data</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/BigDataO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/BigData.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Descriptive Analytics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Cluster Analysis:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/ClustersL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ClustersO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/Clusters.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Association Analysis:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/ARulesL.pdf">Lecture</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Predictive Analytics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Decision Trees:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/DTreesL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesO.R">R</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesG.pdf">Rattle</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Ensembles of Decision Trees:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/EnsemblesL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EnsemblesO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EnsemblesO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">SVM (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">KernLab (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">NeuralNetworks (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">NNet (R)</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Model Delivery<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Evaluating Models:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/EvaluationO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EvaluationO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Evaluation (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Scoring (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">PMML (R) Exporting Models for Deployment</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Advanced Topics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Text Mining:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/TextMiningO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/TextMiningO.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Advanced R Topics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/PlotsB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Plots</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Plots.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Plots.R">R</a>) Miscellaneous Plots</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/FunctionsB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Functions</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Functions.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Functions.R">R</a>) Writing Functions in R</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/ParallelB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Parallel</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Parallel.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Parallel.R">R</a>) Parallel Execution</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Packaging (R) Pulling it Together into a Package</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Doing R with Style:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/StyleO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/StyleO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Literate Data Mining with KnitR:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/KnitRL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/KnitRO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/KnitRO.R"></a></li>
</ol></li>
</ul>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/11313/linux-sort-commands-for-bioinformatics</guid>
	<pubDate>Sat, 31 May 2014 15:41:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/11313/linux-sort-commands-for-bioinformatics</link>
	<title><![CDATA[Linux Sort Commands for Bioinformatics]]></title>
	<description><![CDATA[<p>Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space efficiency GNU sort stands at the top. It can sort a 20Gb file with less than 2Gb memory. It is not trivial to implement so powerful a sort by yourself.</p><p>sort a space-delimited file based on its first column, then the second if the first is the same, and so on:<br />sort input.txt</p><p>sort a huge file (GNU sort ONLY):<br />sort -S 1500M -t $HOME/tmp input.txt &gt; sorted.txt</p><p>sort starting from the third column, skipping the first two columns:<br />sort +2 input.txt</p><p>sort the second column as numbers, descending order; if identical, sort the 3rd as strings, ascending order:<br />sort -k2,2nr -k3,3 input.txt</p><p>sort starting from the 4th character at column 2, as numbers:<br />sort -k2.4n input.txt</p><p>More Linxu sort command information<br /><br />If you have any sort commands you'd like to share, please add them to our comments section below. For more help, you can also type:<br /><br />man sort<br /><br />or<br /><br />sort --help<br /><br />on your Unix/Linux system.</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/11494/postdoc-position-at-centre-mediterraneen-de-medecine-moleculaire-nice-france</guid>
  <pubDate>Wed, 04 Jun 2014 07:20:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoc position at Centre Méditerranéen de Médecine Moléculaire - Nice - France]]></title>
  <description><![CDATA[
<p>The research group of Dr. Michele Trabucchi at the Centre Méditerranéen de Médecine Moléculaire (C3M) at INSERM U1065 (University of Nice Sophia-Antipolis, France) is seeking candidates for a Postdoctoral fellow position to start on October 2014 for 3 years funded by FRM (Fondation pour la Recherche Médicale).<br />The broad interest of the lab is in understanding the expression control and function of small RNAs in activated myeloid cells (visit our webpage to check research interests and publications of the group : http://www.unice.fr/c3m/EN/Equipe10.html ). </p>

<p>The work will focus on the functional studies of small RNAs by using next-generation sequencing approaches.<br /> <br />Candidates should hold a Ph.D. degree and have strong background in bioinformatics.<br />The University of Nice Sophia-Antipolis provides a wide range of facilities and training essential for biomedical research.</p>

<p>Interested applicants should send a PDF with a cover letter stating research interests and qualifications, an updated CV, a summary of previous research experience and contact information for two references to Michele Trabucchi ( mtrabucchi@unice.fr )</p>

<p>Homepage: http://www.unice.fr/c3m/EN/Equipe10.html</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/11611/ten-recommendations-for-creating-usable-bioinformatics-command-line-software</guid>
	<pubDate>Sun, 08 Jun 2014 10:06:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/11611/ten-recommendations-for-creating-usable-bioinformatics-command-line-software</link>
	<title><![CDATA[Ten recommendations for creating usable bioinformatics command line software]]></title>
	<description><![CDATA[<p><span>Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten recommendations for command line software author&rsquo;s tools to follow, which I believe would greatly improve the uptake and usability of their products, waste less user&rsquo;s time, and improve the quality of scientific analyses.</span></p><p>Address of the bookmark: <a href="http://www.gigasciencejournal.com/content/2/1/15?utm_content=buffer25ee0&amp;utm_medium=social&amp;utm_source=twitter.com&amp;utm_campaign=buffer" rel="nofollow">http://www.gigasciencejournal.com/content/2/1/15?utm_content=buffer25ee0&amp;utm_medium=social&amp;utm_source=twitter.com&amp;utm_campaign=buffer</a></p>]]></description>
	<dc:creator>RAJESH DETROJA</dc:creator>
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