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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/2261?offset=1180</link>
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	<description><![CDATA[]]></description>
	
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/22761/pit-bioinformatics-group</guid>
  <pubDate>Tue, 16 Jun 2015 14:34:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[PIT Bioinformatics Group]]></title>
  <description><![CDATA[
<p>PIT Bioinformatics Group solves problems in bioinformatics and  computational biology. Recent developed online tools:</p>

<p>- Budapest Reference Connectome: View a parametrizable connectome (brain graph).<br />- AmphoraNet: The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data.<br />- AmphoraVizu: Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet.<br />- SCARF: Free online association rule mining tool.</p>

<p>More at: http://pitgroup.org</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/34727/letter-of-motivation-for-bioinformatics-applicants</guid>
	<pubDate>Thu, 21 Dec 2017 03:43:04 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34727/letter-of-motivation-for-bioinformatics-applicants</link>
	<title><![CDATA[Letter of motivation for bioinformatics applicants !]]></title>
	<description><![CDATA[<p>A motivation letter, or sometimes called letter of motivation or motivational letter, is actually a letter being send together with your professional resume to support your application for job, University admission or internship. The motivational letter is actually a personal statement which should persuade selection panel, or human resource clerk that you are perfect candidate for a position. Writing a impressive &lsquo;Letter of Motivation&rsquo; might help you to get the post with an ease.&nbsp;</p><p>Usually when you apply anywhere you need to fulfill some specific kind of requirements which usually include writing a formal application, letter of motivation, research proposal etc. Usually it is hard for grad students to write a crisp, clean and clear letter of motivation. To be honest, you may find several posts on the internet which do tell you how to write professionally. They are good enough to clearly tell you what points should be included, what not and many other things to learn about professional writing. Still, when I look back at my graduation days, I know even after reading many instructions I was not able to write &lsquo;to-the-point&rsquo;. According to me , writing skill is not something that you can part in binary like- &lsquo;I write perfectly&rsquo; or &lsquo;I can not write even a word&rsquo;. It is something that you learn and get better with the the time. So, I am not going to pin-point the suggestions because you can get it many where but some &lsquo;to-the-point&rsquo; things which you may use directly in your letter.</p><h5>Ideas and main points</h5><p>Start with writing down some of the main ideas, important points you would like to approach in your letter and later build around them, enrich their content; an example would be :</p><ol>
<li>Make your goal clear; provide a short preview of the rest of the letter;</li>
<li>Why do you think that the university and the Master's program are interesting and suitable for you? ;</li>
<li>Focus on some of your strongest qualifications, past experiences (international experiences are always relevant) and qualities; organise the middle paragraphs in terms of the qualifications most relevant to the programme, you can also refer to your CV for more details;</li>
<li>Conclude by restating your interest and show appreciation for the chance to prove yourself in the letter (in some cases you can ask for a personal interview)</li>
</ol><p>How to start- <br />Your very first line should not be just a line but an impression and reference. None would want to read you unless he knows what it is about. Just like this post. If I would not have written that it is about writing a motivation-letter, you probably would not get annoyed. So start by writing what your letter is about. It could seem like this-</p><h5>Letter Of Application</h5><p>Your Address And Contact Details</p><p>Receiver&rsquo;s Address</p><p>Dear XYZ</p><p>I would like to apply for the&hellip;..</p><p>or</p><p>I am writing here to apply for the&hellip;</p><p>or</p><p>This is regarding your advert. published&hellip;.</p><p>Then Tell Background like-<br />As my resume reveals, I have Bachelor`s degree from XYZ University and currently, I am&hellip;..</p><p>Be sure to signify your institution/University like-<br />I am privileged to obtain my postgraduate education in Bioinformatics at XXX which is known for its enriching academic ambiance where learning and research complement each other.</p><p>Then tell about your professional experience like-<br />Being taught by eminent faculty, I have developed a big interest and passion towards Bioinformatics and managed to have a strong foundation in &hellip;&hellip;</p><p>After that tell how this position would help you, like-<br />The opportunity to participate in this study would foster&hellip;.</p><p>Assure them that you will make use of whatever you learn there, like-<br />I plan to ensure the further dissemination of the knowledge and experience gained by this opportunity in&hellip;</p><p>Close the letter with usual formality, like-<br />I, hereby enclose a copy of my CV/Resume (whatever it is, there is a difference we all know it) with the hope of consideration. Looking forward to hearing from you.</p><p><br />All the things written above is just my view. You still should see and learn which can be done by one thing and that is -reading about it. Then , please try to write yourself, do not copy /paste. Whatever is written in the post is just to have an idea about the things that should be included in the letter of motivation. You need to write accordingly with a wise choice of words.<br />Hope this was helpful. You may comment or ask anything if you want to.</p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/35423/jrf-at-jaypee-institute-of-information-technology-jiit-noida-department-of-biotechnology</guid>
  <pubDate>Fri, 02 Feb 2018 11:26:14 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF at Jaypee Institute of Information Technology (JIIT), Noida Department of Biotechnology]]></title>
  <description><![CDATA[
<p>Lab of Dr. Rawal is supported by generous grants to build advanced applications in emerging areas of cancer genomics, network sciences, vaccine development and epidemiology. The lab has dedicated high end Xeon servers, desktops, &amp; laptops for research purpose. Currently, there are several researchers (JRFs, B. Techs, M. Tech and PhDs) working on several challenging bioinformatics projects. In addition, Dr. Rawal has collaborations with reputed national and international research teams.</p>

<p>Dr. Rawal and his US based collaborators have recently secured grant for development of vaccine against an infectious disease agent. For this project, applications are invited for the posts of Junior Research Fellow (two positions) for the following time-bound sponsored projects as per the details given below:</p>

<p>PI: Dr. Kamal Rawal, Biotechnology Department, JIIT, Noida.</p>

<p>Post: JRF (Two)</p>

<p>Job Description: Bioinformatics analysis, Software development, Programming, Text Mining, Deep Curation</p>

<p>Duration: The post is valid upto duration of the project. Continuation is subject to satisfactory performance.</p>

<p>Emoluments depends upon experience and skill sets. We will hire them on following scale:</p>

<p>Junior Scale- Level 1: Rs 22000 per month.</p>

<p>Senior Scale - Level 2: Rs 30000 per month.</p>

<p>Essential Qualification(s) for JRF post:</p>

<p>(A) A Master degree (MSc or MTech or equivalent with minimum of 55% marks) in Bioinformatics/Computer Sciences, IT, Life Sciences, Physical Sciences, Chemical Sciences, Mathematical Sciences or Statistics, Agriculture, Veterinary, Medicine, Pharmacy, Engineering &amp; Technology from a recognized University/Institute and having some experience/skills in bioinformatics, programming, computational or software development work.</p>

<p>(B) In exceptional cases, we can also consider candidates with B. Tech or equivalent with right skill sets and experience for the post of JRFs.</p>

<p>Desirable:</p>

<p>A) Preference will be given to BINC (Bioinformatics National Certification)/DBT-BET/ICMR/ CSIR /UGC/ JRF/ NET qualified candidates. However, Non- NET qualified candidates can also apply.<br />B) Candidates who have worked with programing, text mining, NGS data analysis etc are encouraged to apply.<br />Updated resume including a cover letter (preferably by E. mail) should be mailed to bioinfocvatgmaildotcom, and Dr. Kamal Rawal at kamaldotrawalatgmaildotcom. Short listed candidates would be called for interview. No TA/DA will be paid to the candidates called for interview.</p>

<p>Candidate may also fill the following form:</p>

<p>https://docs.google.com/…/1FAIpQLSdZoZ21ZoNRStEeL5…/viewform</p>

<p>Or</p>

<p>http://tinyurl.com/bioinfocv2017</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/36211/project-based-approach-to-improve-bioinformatics-education-with-skilled-and-meaningful-access-to-omics-data</guid>
	<pubDate>Wed, 11 Apr 2018 13:31:42 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/36211/project-based-approach-to-improve-bioinformatics-education-with-skilled-and-meaningful-access-to-omics-data</link>
	<title><![CDATA[Project-based approach to improve bioinformatics education with skilled and meaningful access to omics data]]></title>
	<description><![CDATA[<p>Pine Biotech has been collaborating with Loyola University of New Orleans on piloting a new approach to bioinformatics education using the intuitive and logic-drive bioinformatics platform T-BioInfo.</p><p>https://edu.t-bio.info/collaborative-model-bioinformatics-education-combining-biologically-inspired-bioinformatics-project-based-learning/</p>]]></description>
	<dc:creator>eliabrodsky</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/38029/biologist-versus-computational-biologist</guid>
	<pubDate>Mon, 29 Oct 2018 04:23:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/38029/biologist-versus-computational-biologist</link>
	<title><![CDATA[Biologist versus computational biologist !]]></title>
	<description><![CDATA[<p>This is how it work :)</p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/38029" length="69305" type="image/png" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39471/bioinformatics-for-precision-oncology-online-training-program-summer-2019</guid>
	<pubDate>Wed, 05 Jun 2019 15:04:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39471/bioinformatics-for-precision-oncology-online-training-program-summer-2019</link>
	<title><![CDATA[Bioinformatics for Precision Oncology - Online Training Program, Summer 2019]]></title>
	<description><![CDATA[<p><img src="https://edu.t-bio.info/wp-content/uploads/2019/05/OncologyBioinformatics.jpeg" width="600" height="337.5" alt="image" style="border: 0px;"></p><p>The bioinforamtics for precision oncology online course provides an opportunity to learn about bioinformatics methods used in precision oncology research and practice. As a subset of precision medicine, precision oncology deals with molecular factors involved in the biological rpocesses that lead to cancer and can help diagnose, treat or prevent this disease. Oncology is driven by data, often times generated using Next Generation Sequencing (NGS) that helps us study the genomic and transcriptomic sub-cellular processes. Learn more and register:&nbsp;https://edu.t-bio.info/bioinformatics-training-precision-oncology/</p>]]></description>
	<dc:creator>eliabrodsky</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/40204/iitm-tokyo-tech-joint-symposium</guid>
	<pubDate>Thu, 24 Oct 2019 10:30:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/40204/iitm-tokyo-tech-joint-symposium</link>
	<title><![CDATA[IITM-Tokyo Tech Joint Symposium]]></title>
	<description><![CDATA[<p>The IITM-Tokyo Tech Joint Symposium is a biannual international symposium held in Indian Institute of Technology Madras (IITM), India in collaboration with Tokyo Institute of Technology (Tokyo-Tech), Japan. During the symposium, experts in various domains of Bioinformatics gather from India and Japan under one roof to discuss and present their works. This provides an unique opportunity to the researchers and students to learn the frontiers and interact with eminent scientists in Bioinformatics. The 5th IITM - Tokyo Tech Joint Symposium titled "Current trends in Bioinformatics: Big data analysis, machine learning and drug design", will be held on 6th - 7th March 2020 in IITM, Chennai, India.</p><p>The symposium will focus on topics in the below mentioned areas.</p><p>Topics: Algorithms for biomolecular sequences / structures Bioinformatics databases and tools Protein function Structure based drug design Machine learning Deep learning Large scale data analysis Big Data NGS Analysis Protein interactions/network Molecular modelling/docking/screening Biomolecular structure and function More</p><p>Info: https://web.iitm.ac.in/bioinfo2/symposium2020/home</p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/40882/troyanskaya-lab</guid>
  <pubDate>Tue, 04 Feb 2020 06:40:36 -0600</pubDate>
  <link></link>
  <title><![CDATA[Troyanskaya Lab]]></title>
  <description><![CDATA[
<p>The goal of our research is to interpret and distill this complexity through accurate analysis and modeling of molecular pathways, particularly those in which malfunctions lead to the manifestation of disease. We are inventing integrative methods for systems-level pathway modeling through integrative analysis of genome-scale datasets. We apply these approaches in studying challenging biological problems, such as how pathways function in diverse cell types and how they change dynamically.</p>

<p>https://function.princeton.edu/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/42275/frequent-parameters-for-bioinformatics-tools</guid>
	<pubDate>Tue, 27 Oct 2020 19:42:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/42275/frequent-parameters-for-bioinformatics-tools</link>
	<title><![CDATA[Frequent parameters for bioinformatics tools !]]></title>
	<description><![CDATA[<div><div>Third party executable parameters and options.</div><div>&nbsp;</div><div>Trimmomatic</div><div>&nbsp;</div><div>&ldquo;ILLUMINACLIP:...:2:30:10&rdquo;</div><div>&ldquo;LEADING:15&rdquo;</div><div>&ldquo;TRAILING:15&rdquo;</div><div>&ldquo;SLIDINGWINDOW:4:20&rdquo;</div><div>&ldquo;MINLEN:20&rdquo;</div><div>&ldquo;TOPHRED33&rdquo;</div><div>&nbsp;</div><div>Filtlong</div><div>--min_length 500</div><div>--min_mean_q 85</div><div>--min_window_q 65</div><div>&nbsp;</div><div>FastQ Screen</div><div>--aligner bowtie2' (bwa for PacBio)</div><div>--subset 1000 (for PacBio)</div><div>&nbsp;</div><div>SPAdes</div><div>--careful</div><div>--disable-gzip-output</div><div>--cov-cutoff auto</div><div>--phred-offset 33</div><div>&nbsp;</div><div>HGAP</div><div>Pbalign.task_options.min_accuracy: 70</div><div>Pbalign.task_options.no_split_subreads: false</div><div>Genomic_consensus.task_options.min_confidence: 40</div><div>falcon_ns.task_options.HGAP_GenomeLength_str:</div><div>6000000</div><div>Pbcoretools.task_options.read_length: 0</div><div>Genomic_consensus.task_options.use_score: 0</div><div>Pbalign.task_options.min_length: 50</div><div>Pbalign.task_options.algorithm_options: --minMatch 12</div><div>--bestn 10 --minPctSimilarity 70.0</div><div>Pbalign.task_options.hit_policy: randombest</div><div>Pbcoretools.task_options.other_filters: rq &gt;= 0.7</div><div>Pbalign.task_options.concordant: false</div><div>Genomic_consensus.task_options.min_coverage: 5</div><div>falcon_ns.task_options.HGAP_SeedCoverage_str: 30</div><div>falcon_ns.task_options.HGAP_AggressiveAsm_bool: false</div><div>Genomic_consensus.task_options.algorithm: best</div><div>falcon_ns.task_options.HGAP_SeedLengthCutoff_str: -1</div><div>Genomic_consensus.task_options.diploid: false</div><div>&nbsp;</div><div>MeDuSa</div><div>-random 100</div><div>&nbsp;</div><div>Prokka</div><div>--usegenus</div><div>--force</div><div>--addgenes</div><div>--rfam</div><div>--rawproduct</div><div>&nbsp;</div><div>cmsearch (taxonomy, 16S)</div><div>--rfam</div><div>--noali</div><div>&nbsp;</div><div>blastn (taxonomy, 16S)</div><div>-evalue 1E-10</div><div>&nbsp;</div><div>blastn (MLST)</div><div>-ungapped</div></div><div><div>-dust no</div><div>-evalue 1E-20</div><div>-word_size 32</div><div>-culling_limit 2</div><div>-perc_identity 95</div><div>&nbsp;</div><div>blastp (VF)</div><div>-culling_limit 2</div><div>&nbsp;</div><div>RGI (ABR)</div><div>--input_type contig</div><div>&nbsp;</div><div>bowtie2 (mapping)</div><div>--sensitive</div><div>&nbsp;</div><div>minimap2 (mapping)</div><div>-a</div><div>-x map-ont</div><div>&nbsp;</div><div>samtools mpileup (SNP&nbsp;detection)</div><div>-uRI</div><div>&nbsp;</div><div>bcftools call (SNP detection)</div><div>--variants-only</div><div>--skip-variants indels</div><div>--output-type v</div><div>--ploidy 1</div><div>-c</div><div>&nbsp;</div><div>SNPsift filter (SNP detection)</div><div>"( QUAL &gt;= 30 ) &amp; (( na FILTER ) | (FILTER = 'PASS')) &amp;</div><div>( DP &gt;= 20 ) &amp; ( MQ &gt;= 20 )"</div><div>&nbsp;</div><div>SNPeff ann (SNP detection)</div><div>-nodownload</div><div>-no-intron</div><div>-no-downstream</div><div>-no SPLICE_SITE_REGION</div><div>-upDownStreamLen 250</div><div>&nbsp;</div><div>bcftools consensus</div><div>(phylogenetic tree)</div><div>--haplotype 1</div><div>&nbsp;</div><div>fasttreemp</div><div>-nt</div><div>-boot 100</div><div>&nbsp;</div><div>roary</div><div>-e</div><div>-n</div><div>-cd 100</div><div>-g 100000</div></div>]]></description>
	<dc:creator>BioStar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/9213/basic-notions-in-molecular-biology-and-genetics</guid>
	<pubDate>Sun, 16 Mar 2014 18:15:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/9213/basic-notions-in-molecular-biology-and-genetics</link>
	<title><![CDATA[Basic Notions in Molecular Biology and Genetics]]></title>
	<description><![CDATA[<p>This is a presentation about some fundamental concepts applied in molecular biology and genetics, also it contains a little bit of the experience that one of our members has gained in his years of undergraduate state related to molecular cloning. Our research group, called "BIOPHARM" (Acronymus of Laboratory of Bioinformatics and Pharmacogenetics), was stablished on 2007, took it a bit of years to make it real this initative, although, nowadays, we're working on some projects involved in those fields. This research group belongs to the Department of Biochemistry, Faculty of Pharmacy and Biochemistry, Universidad Nacional Mayor de San Marcos, Lima, Per&uacute;. We try to encourage research initiatives, helping them and also we use to participate in differents courses, congress and symposiums.</p>]]></description>
	<dc:creator>Antony Campos</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/9213" length="2962422" type="application/pdf" />
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