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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/22793?offset=1340</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38316/simba-a-genome-assembly-project-management-system</guid>
	<pubDate>Thu, 29 Nov 2018 08:52:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38316/simba-a-genome-assembly-project-management-system</link>
	<title><![CDATA[SIMBA: a Genome Assembly Project Management System]]></title>
	<description><![CDATA[<p><span>SIMBA</span><span>, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely downloaded, shared and modified.</span></p><p>Address of the bookmark: <a href="http://ufmg-simba.sourceforge.net/" rel="nofollow">http://ufmg-simba.sourceforge.net/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38668/gvolante-completeness-assessment-of-genometranscriptome-sequences</guid>
	<pubDate>Sun, 13 Jan 2019 07:03:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38668/gvolante-completeness-assessment-of-genometranscriptome-sequences</link>
	<title><![CDATA[gVolante: Completeness Assessment of Genome/Transcriptome Sequences]]></title>
	<description><![CDATA[<p><span>A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section</span></p><p>Address of the bookmark: <a href="https://gvolante.riken.jp/analysis.html" rel="nofollow">https://gvolante.riken.jp/analysis.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21472/asst-professor-at-central-university-of-jharkhand-cuj</guid>
  <pubDate>Sun, 01 Mar 2015 01:17:52 -0600</pubDate>
  <link></link>
  <title><![CDATA[Asst. Professor at Central University of Jharkhand (CUJ)]]></title>
  <description><![CDATA[
<p>Central University of Jharkhand (CUJ) has issued a recruitment notification for the recruitment of Assistant Professor through recruitment notification – Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015. Candidates who have completed M.Sc, Ph.D can apply for the new recruitment notification from Central University of Jharkhand (CUJ)</p>

<p>Central University of Jharkhand has been granted funds by the Department of Biotechnology (DBT), Govt. of India to establish “DBT-Boost to CUJ Interdisciplinary Life Sciences Departments for Education and Research” Applications are invited for the Assistant Professor on purely temporary basis. The appointments shall be initially for a period of one year, renewable every year depending on the satisfactory performance, till the end of project.</p>

<p>Position: ASSISTANT PROFESSOR (Total 03)<br />Salary: 45,000/- (fixed) per month<br />Essential Qualifications: i. Good academic record with at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed) at the master’s degree level with specialization in Biodiversity and Systematic/ Systems Biology/ Biophysics/ Bioinformatics from an Indian  University, or an equivalent degree from an accredited foreign university. ii. Besides fulfilling the above qualifications, the candidates must have cleared the National Eligibility Test (NET) conducted by the UGC, CSIR or similar test accredited by the UGC like SLET/SET. iii. Notwithstanding anything contained in i. and ii. candidates, who are or have been awarded Ph.D Degree in accordance with the University Grants Commission (Minimum Standards and Procedure for Award of Ph.D. Degree) Regulation, 2009, shall be exempted from therequirement of the minimum eligibility condition of NET/SLET/SET for recruitment and appointment of Assistant Professor. iv. NET/SLET/SET shall also not be required for such disciplines for which NET/SLET/SET in not conducted.<br />Desirable: Preference will be given to candidates having Ph.D in any of the above mentioned areas with NET</p>

<p>IMPORTANT DATES TO REMEMBER  :</p>

<p>Last Date to Apply for this job 24/3/2015</p>

<p>REFERENCE:</p>

<p>Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015.</p>

<p>More at http://cuj.ac.in/careers.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39217/caulobacter-ethensis-20-computer-generated-genome-of-a-living-organism</guid>
	<pubDate>Wed, 03 Apr 2019 08:45:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39217/caulobacter-ethensis-20-computer-generated-genome-of-a-living-organism</link>
	<title><![CDATA[Caulobacter ethensis - 2.0 : Computer-generated Genome of a Living Organism]]></title>
	<description><![CDATA[<div><span>All the genome sequences of organisms known throughout the world are stored in a database belonging to the National Center for Biotechnology Information in the United States. As of today, the database has an additional entry:&nbsp;<em><strong><span>Caulobacter ethensis</span></strong></em><span><strong><span>-2.0</span></strong>.&nbsp;</span></span></div><div><span><span>&nbsp;</span></span></div><div><span><span>It is the&nbsp;<strong>world's first fully computer-generated genome of a living organism</strong>, developed by scientists at ETH Zurich.&nbsp;</span></span></div><div><span><span>&nbsp;</span></span></div><div><span><span>However, it must be emphasised that although the genome for&nbsp;</span><em>C. ethensis</em>-2.0 was physically produced in the form of a very large DNA molecule, a corresponding organism does not yet exist.</span></div><div><span>&nbsp;</span></div><div><span><strong>Source</strong>:&nbsp;<a href="https://www.sciencedaily.com/releases/2019/04/190401171343.htm?utm_source=feedburner&amp;utm_medium=email&amp;utm_campaign=Feed%3A+sciencedaily%2Fmost_popular+%28Most+Popular+News+--+ScienceDaily%29">https://www.sciencedaily.com/releases/2019/04/190401171343.htm</a></span></div>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21624/ra-bioinformatics-at-ch-charan-singh-university-meerut</guid>
  <pubDate>Wed, 11 Mar 2015 09:07:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Ch. Charan Singh University, Meerut]]></title>
  <description><![CDATA[
<p>Ch. Charan Singh University, Meerut</p>

<p>http://molbiolabccsumrt.webs.com/</p>

<p>Applications are invited for one post of RA in a DBT funded research project “Creation of Bioinformatics Infrastructure Facility (BIF) for the promotion of Biology Teaching through Bioinformatics (BTBI) Scheme of BTISet”.</p>

<p>Candidate should have a Ph.D. degree in Bioinformatics/Biotechnology/Genetics and Plant Breeding with adequate experience in the area of Bioinformatics. If a suitable candidate for the post of RA is not available, a JRF/SRF may be appointed.</p>

<p>Candidate for the post of JRF/SRF should have Master’s degree in relevant subject with adequate experience in the area of Bioinformatics and should be NET/DBT-BINC qualified</p>

<p>Interested candidates may send their bio-data to Prof. H. S. Balyan (hsbalyan@gmail.com) (in exceptional case, bio-data may also be submitted at the time of interview) and attend the interview on Monday, March 30, 2015 at 11:00 AM in the Department of Genetics &amp; Plant Breeding, Ch. Charan Singh University, Meerut. Candidates shall bring their original documents at the time of interview for verification. No interview letters will be issued and no TA/DA will be paid.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39821/gvolante-completeness-assessment-of-genometranscriptome-sequences</guid>
	<pubDate>Tue, 06 Aug 2019 21:37:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39821/gvolante-completeness-assessment-of-genometranscriptome-sequences</link>
	<title><![CDATA[gVolante: Completeness Assessment of Genome/Transcriptome Sequences]]></title>
	<description><![CDATA[<p><strong>gVolante</strong><span>&nbsp;provides an online interface for completeness assessment of user&rsquo;s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.</span></p>
<p><img src="https://gvolante.riken.jp/images/assessment.png" width="937" height="545" alt="image" style="border: 0px;"></p><p>Address of the bookmark: <a href="https://gvolante.riken.jp/" rel="nofollow">https://gvolante.riken.jp/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</guid>
	<pubDate>Tue, 17 Mar 2015 00:47:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</link>
	<title><![CDATA[Coding Ground]]></title>
	<description><![CDATA[<p>Online coding group for most of the programming languages.</p>
<p>Code in almost all popular languages using Coding Ground.&nbsp;Edit, compile, execute and share your projects, 100% cloud.</p>
<p>http://www.tutorialspoint.com/codingground.htm</p><p>Address of the bookmark: <a href="http://www.tutorialspoint.com/codingground.htm" rel="nofollow">http://www.tutorialspoint.com/codingground.htm</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/40609/genome-informatics-section-lab</guid>
  <pubDate>Sat, 25 Jan 2020 06:38:23 -0600</pubDate>
  <link></link>
  <title><![CDATA[Genome Informatics Section Lab !]]></title>
  <description><![CDATA[
<p>Our section develops and applies computational methods for the analysis of massive genomics datasets, focusing on the challenges of genome sequencing and comparative genomics. We aim to improve such foundational processes and translate emerging genomic technologies into practice.</p>

<p>The Genome Informatics Section is hiring! Come join our outstanding team at the NIH’s National Human Genome Research Institute and contribute to the development of new reference genomes and computational methods for DNA sequencing and analysis. Both postdoc and PhD students positions are available. More information and application instructions follow below.</p>

<p>More at https://genomeinformatics.github.io/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41691/genobuntu-package-for-next-generation-sequencing-and-genome-assembly</guid>
	<pubDate>Mon, 18 May 2020 16:47:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41691/genobuntu-package-for-next-generation-sequencing-and-genome-assembly</link>
	<title><![CDATA[Genobuntu: Package for Next Generation Sequencing and Genome Assembly]]></title>
	<description><![CDATA[<div>
<p>Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.<br><br>Commonly used biological software and example script files for different assembly pipelines have also been provided, where the example script files can be updated to suit one&rsquo;s experimental needs. Genobuntu attempts to reduce the amount of time and energy needed to build software workstations and it can also act as a good teaching source for a class room setting.<br><br>Therefore, Genobuntu offers a well-tailored environment for both novices and experts working in the field of genome assembly.</p>
</div>
<div>
<h3>Features</h3>
<ul>
<li>Velvet</li>
<li>MiB</li>
<li>SSAKE</li>
<li>EULER</li>
<li>VCAKE</li>
<li>ABySS</li>
<li>ALLPATHS</li>
<li>Celera</li>
<li>SHARCGS</li>
<li>Allpaths</li>
<li>IDBA</li>
<li>TAIPAN</li>
<li>Edena</li>
<li>SOAPdenovo</li>
<li>Maq</li>
<li>IDBA-UD</li>
<li>No. of Reads present in the Ref. Seq.</li>
<li>ART NGS Reads Simulator</li>
<li>HiTEC, FASTQC</li>
<li>Minimum Description Length</li>
<li>SOAPaligner</li>
<li>Sequencing Read Archive Toolkit</li>
</ul>
</div><p>Address of the bookmark: <a href="https://sourceforge.net/projects/genobuntu/" rel="nofollow">https://sourceforge.net/projects/genobuntu/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44366/mitofinder</guid>
	<pubDate>Tue, 29 Aug 2023 02:13:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44366/mitofinder</link>
	<title><![CDATA[MitoFinder]]></title>
	<description><![CDATA[<p dir="auto">Allio, R., Schomaker-Bastos, A., Romiguier, J., Prosdocimi, F., Nabholz, B., &amp; Delsuc, F. (2020) Mol Ecol Resour. 20, 892-905. (<a href="https://doi.org/10.1111/1755-0998.13160">publication link</a>)</p>
<p dir="auto" style="text-align: center;"><a href="https://github.com/RemiAllio/MitoFinder/blob/master/image/logo.png" target="_blank"><img src="https://github.com/RemiAllio/MitoFinder/raw/master/image/logo.png" alt="Drawing" width="250" style="border: 0px;"></a></p>
<p dir="auto"><span>Mitofinder</span>&nbsp;is a pipeline to&nbsp;<span>assemble</span>&nbsp;mitochondrial genomes and&nbsp;<span>annotate</span>&nbsp;mitochondrial genes from trimmed read sequencing data.</p>
<p dir="auto"><span>MitoFinder</span>&nbsp;is also designed to&nbsp;<span>find</span>&nbsp;and&nbsp;<span>annotate</span>&nbsp;mitochondrial sequences in existing genomic assemblies (generated from Hifi/PacBio/Nanopore/Illumina sequencing data...)</p>
<p dir="auto"><span>MitoFinder</span>&nbsp;is distributed under the&nbsp;<a href="https://github.com/RemiAllio/MitoFinder/blob/master/License/LICENSE">license</a>.</p><p>Address of the bookmark: <a href="https://github.com/RemiAllio/MitoFinder" rel="nofollow">https://github.com/RemiAllio/MitoFinder</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

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