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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/24264?offset=1080</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/853/ragan-lab</guid>
  <pubDate>Sun, 14 Jul 2013 12:03:43 -0500</pubDate>
  <link></link>
  <title><![CDATA[Ragan Lab]]></title>
  <description><![CDATA[
<p>Computational systems biology</p>

<p>Research Area: <br />breast cancer; pancreatic cancer; prostate cancer; gastrointestinal disorders; urohaemolytic disorders; staphylococcal diseases</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/7989/cancers-cure-is-on-the-way</guid>
	<pubDate>Wed, 22 Jan 2014 12:00:46 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/7989/cancers-cure-is-on-the-way</link>
	<title><![CDATA[Cancers cure is on the way !!!]]></title>
	<description><![CDATA[<p>The study on blind mole rat (Spalax) was carried out by researchers from the University of Haifa, Israel, and published in the peer-reviewed scientific journal BMC Biology.</p><p>The blind mole rat (Spalax) is an intriguing creature worthy of study. This was animal research examining the resistance subterranean blind mole rats (Spalax) have to cancers. Blind mole rats are one of a unique group of animals that spend their lives underground, are tolerant of very low oxygen levels (down to only 3% concentration &ndash; levels that would kill a human), have a long lifespan of more than 20 years, which is exceptional for a small rodent, and show no clear signs of ageing or age-related diseases.</p><p>This research has demonstrated the unique abilities of the blind mole rat to resist cancer, even when directly given potent cancer-causing chemicals. In this study researchers gave blind mole rats potent cancer-causing chemicals either through injections or applied directly to the skin, but the animals didn't develop cancer.<br /><br />Remarkably, connective tissue cells (fibroblasts) taken from the blind mole rat even prevented the growth of human cancer cells when they were grown together in the laboratory.<br /><br />In the laboratory, the researchers also demonstrated how connective tissue cells called fibroblasts taken from the animal seem to play an important role in this cancer resistance. These cells prevented the growth of human cancer cells when the two types of cells were grown together in the laboratory.<br /><br />The researchers concluded that, "This report provides pioneering evidence that Spalax [the blind mole rat] is not only resistant to spontaneous cancer, but also to experimentally induced cancer, and shows the unique ability of Spalax fibroblasts to inhibit growth and kill cancer cells, but not normal cells, either through direct fibroblast-cancer cell interaction or via soluble factors."</p><p>Nonetheless, there remains optimism that understanding the anti-cancer mechanisms of mole rats may one day help inform further cancer treatments for humans, but a lot more research &ndash; and probably a significant amount of time &ndash; is needed before this can be considered.</p><p><img src="http://i.telegraph.co.uk/multimedia/archive/02599/naked-mole-rat_2599114b.jpg" alt="image" width="620" height="387" style="border: 0px; border: 0px;"></p><p>Reference:</p><p>Image: telegraph.co.uk</p><p>http://www.biomedcentral.com/1741-7007/11/91</p><p>Manov, Irena, et al. "Pronounced cancer resistance in a subterranean rodent, the blind mole-rat, Spalax: in vivo and in vitro evidence." BMC biology 11.1 (2013): 91.</p><p>http://www.nhs.uk/news/2014/01January/Pages/Claims-of-a-universal-cure-for-cancer-misleading.aspx</p><p>http://www.express.co.uk/news/health/454188/EXCLUSIVE-Cure-for-ALL-cancers-is-on-the-way-as-scientists-discover-major-breakthrough</p><p>http://www.dailymail.co.uk/health/article-2540321/Could-mole-rats-hold-key-cure-cancer-Scientists-hail-potentially-life-changing-breakthrough.html</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/38838/computer-scientistbioinformatician-at-ieo-in-milan-italy</guid>
  <pubDate>Thu, 31 Jan 2019 09:10:12 -0600</pubDate>
  <link></link>
  <title><![CDATA[Computer scientist/bioinformatician at IEO in Milan, Italy]]></title>
  <description><![CDATA[
<p>We are looking for a computer scientist or a bioinformatician with a strong computation background to join the bioinformatics unit of the IEO in Milan. Web development, scripting, experience with spring boot, hpc, docker are appreciated. The candidate will evolve in a research environment (next generation sequencing among others). The selected candidate will consolidate our team for the development and maintenance of the bioinformatics resources, and will have the opportunity to support the research groups in setting new tools and pipelines.</p>

<p>Place of employment and work</p>

<p>The candidate will be located at the Department of Experimental Oncology of the European Institute of Oncology in Milan (Italy), one of Europe’s leading research institutes in biomedical research, where he/she will also interact with one of the largest computational biology communities in Italy</p>

<p>Requirements:</p>

<p>The candidate should have a good knowledge of the UNIX system and good programming skills (bash, R, python, java). Background in bioinformatics would be appreciated but is not mandatory. Additional experience with containers (docker, singularity),  grid computing, web frameworks, continuous integrations will be appreciated.</p>

<p>For further info or to arrange an informal interview, please write to arnaud.ceol@ieo.it</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/3885/precision-medicine</guid>
	<pubDate>Sat, 24 Aug 2013 15:47:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/3885/precision-medicine</link>
	<title><![CDATA[Precision Medicine]]></title>
	<description><![CDATA[<p>Coupling established clinical&ndash;pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements &mdash; hence the term &ldquo;Precision medicine&rdquo;&nbsp;</p>
<p>Source:<a href="http://www.nejm.org/doi/full/10.1056/NEJMp1114866">http://www.nejm.org/doi/full/10.1056/NEJMp1114866</a></p>
<p><strong>Another video on precision medicine</strong>:</p>
<p><a href="http://www.youtube.com/watch?v=Pi8W0yOXnzE">http://www.youtube.com/watch?v=Pi8W0yOXnzE</a></p>
<p>Precision Medicine basically intergrates bioinformatics, genomics , genetics, molecular biology and nanotechnology to deliver precise cure/diagnotics to a specific patient.</p>
<p>Examples:</p>
<ul>
<li><span>The drug imatinib (Gleevec) designed to inhibit an altered enzyme produced by a fused version of two genes found in chronic myelogenous leukemia.</span></li>
<li><span>The breast cancer drug trastuzumab (Herceptin) works only for women whose tumors have a particular genetic profile called HER-2 positive.</span></li>
</ul>
<p><span>E.g. source :</span></p>
<p><span><a href="http://www.bionews-tx.com/news/2013/08/15/how-the-impact-of-cancer-genomics-on-precision-medicine-is-revolutionizing-cancer-treatment/">http://www.bionews-tx.com/news/2013/08/15/how-the-impact-of-cancer-genomics-on-precision-medicine-is-revolutionizing-cancer-treatment/</a></span></p><p>Address of the bookmark: <a href="http://www.cbsnews.com/video/watch/?id=50149783n" rel="nofollow">http://www.cbsnews.com/video/watch/?id=50149783n</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36806/manta-rapid-detection-of-structural-variants-and-indels-for-germline-and-cancer-sequencing-applications</guid>
	<pubDate>Mon, 28 May 2018 09:41:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36806/manta-rapid-detection-of-structural-variants-and-indels-for-germline-and-cancer-sequencing-applications</link>
	<title><![CDATA[Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.]]></title>
	<description><![CDATA[Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow.<p>Address of the bookmark: <a href="https://github.com/Illumina/manta" rel="nofollow">https://github.com/Illumina/manta</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43055/infogenomer-integrative-reconstruction-of-cancer-genome-karyotypes</guid>
	<pubDate>Wed, 05 May 2021 01:02:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43055/infogenomer-integrative-reconstruction-of-cancer-genome-karyotypes</link>
	<title><![CDATA[InfoGenomeR: Integrative reconstruction of cancer genome karyotypes]]></title>
	<description><![CDATA[<p>InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the optimal breakpoint graph representing cancer genomes.</p>
<p><img src="https://github.com/YeonghunL/InfoGenomeR/raw/master/doc/overview.png" alt="image" style="border: 0px; border: 0px;"></p>
<p>More at&nbsp;https://www.nature.com/articles/s41467-021-22671-6</p><p>Address of the bookmark: <a href="https://github.com/dmcblab/InfoGenomeR" rel="nofollow">https://github.com/dmcblab/InfoGenomeR</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4725/complex-systems-from-physics-to-biology-october-15-16-2013-at-jnu-convention-center</guid>
  <pubDate>Mon, 23 Sep 2013 10:17:17 -0500</pubDate>
  <link></link>
  <title><![CDATA[Complex Systems: From Physics to Biology October 15-16 2013 at JNU Convention Center]]></title>
  <description><![CDATA[
<p>The symposium intents to focus on complex systems arising in a variety of settings in physics and biology. In particular, applications of the concepts of physics to biological sciences will be the major theme of this meeting.</p>

<p>Selected Topics:</p>

<p>    Cluster Dynamics<br />    Non-equilibrium Statistical Mechanics<br />    Forced Systems<br />    Hamiltonian Dynamics<br />    Synchronization &amp; Control<br />    Genomics &amp; Systems Biology<br />    Computational Neuroscience<br />    Econophysics</p>

<p>More @ http://www.jnu.ac.in/Conference/SCS2013/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/863/rolland-lagan-lab</guid>
  <pubDate>Sun, 14 Jul 2013 12:57:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Rolland-Lagan lab]]></title>
  <description><![CDATA[
<p>The Rolland-Lagan lab at the University of Ottawa is specializing in computational and developmental biology. We use a combination of experimental work, microscopy, image analysis and computer simulations to explore developmental mechanisms in two and three dimensions. </p>

<p>Research Area</p>

<p>Developmental biology, Computational biology, Simulation modeling, Image data analysis</p>

<p>Link @ http://mysite.science.uottawa.ca/arolland/index.html</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33976/goldgenomes-online-database</guid>
	<pubDate>Wed, 26 Jul 2017 07:49:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33976/goldgenomes-online-database</link>
	<title><![CDATA[GOLD:Genomes Online Database]]></title>
	<description><![CDATA[<p><span>GOLD</span><span>:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.</span></p>
<p>https://gold.jgi.doe.gov/</p><p>Address of the bookmark: <a href="https://gold.jgi.doe.gov/" rel="nofollow">https://gold.jgi.doe.gov/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43714/hiv-genome-database</guid>
	<pubDate>Fri, 21 Jan 2022 05:40:15 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43714/hiv-genome-database</link>
	<title><![CDATA[HIV genome database !]]></title>
	<description><![CDATA[<p>HIV resources</p>
<p>https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html</p><p>Address of the bookmark: <a href="https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html" rel="nofollow">https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

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