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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/24264?offset=1280</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32485/bacterial-genome-assembly</guid>
	<pubDate>Fri, 05 May 2017 06:11:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32485/bacterial-genome-assembly</link>
	<title><![CDATA[Bacterial genome assembly !!]]></title>
	<description><![CDATA[<p>This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of&nbsp;bacterial sequence data. The bacterial sample used in this tutorial will be referred&nbsp;to simply&nbsp;as &ldquo;Species&rdquo; since it is&nbsp;live data. This data is paired-end data, meaning that there are forward and reverse reads, which we will designate as Sample_R1.fastq and Sample_R2.fastq, respectively.</p>
<p>https://github.com/jennomics/WorkflowPaper/blob/master/Genome%20Assembly%20and%20Annotation.md</p><p>Address of the bookmark: <a href="http://bioinformatics.uconn.edu/bacterial-genome-assembly-tutorial/" rel="nofollow">http://bioinformatics.uconn.edu/bacterial-genome-assembly-tutorial/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1216/project-assistant-in-serb-dst-sponsored-project</guid>
  <pubDate>Fri, 02 Aug 2013 10:31:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant in SERB-DST sponsored project]]></title>
  <description><![CDATA[
<p>Advertisement for post of Project Assistant in SERB-DST sponsored project @ Bioinformatics, Karunya University</p>

<p>Applications are invited for the post of Project Assistant to work in the following<br />project.</p>

<p>• Title of the project: "A novel approach for the identification of key  regulatory molecules and their pathways for Rheumatoid Arthritis" funded by Department of Science and Technology, New Delhi, Government of India.</p>

<p>• Project Assistant</p>

<p>• Essential Qualification: The minimum essential qualification would be M.Sc/B.Tech. in Bioinformatics/ Computer Science /Biotechnology.</p>

<p>• Salary : Rs. 8,000/month for a period of 3 years</p>

<p>Application in plain paper with following details: Name, Address, Date of Birth and Educational Qualifications and details of research experience with publications if any, may be sent to:</p>

<p>Mr. Sachidanand Singh,<br />Principal Investigator,<br />Department of Bioinformatics, School of Biotechnology and Health Sciences<br />Karunya University,<br />Karunya Nagar, Coimbatore- 641114</p>

<p>Ph.no: 09489677764, 09047654981</p>

<p>E-mail: sachidanand@karunya.edu</p>

<p>http://www.karunya.edu/bioinformatics/people/faculty/</p>

<p>Deadline : 25th August 2013</p>

<p>Advertisement: www.karunya.edu/bioinformatics/Project%20Assistant%20in%20SERB.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32631/barrnap-bacterial-ribosomal-rna-predictor</guid>
	<pubDate>Fri, 12 May 2017 09:24:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32631/barrnap-bacterial-ribosomal-rna-predictor</link>
	<title><![CDATA[Barrnap: Bacterial ribosomal RNA predictor]]></title>
	<description><![CDATA[<p>Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).</p>
<p>It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. NHMMER binaries for 64-bit Linux and Mac OS X are included and will be auto-detected. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.&nbsp;</p><p>Address of the bookmark: <a href="https://github.com/tseemann/barrnap" rel="nofollow">https://github.com/tseemann/barrnap</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1466/iscb-asia-2013-translational-bioinformatics-conference</guid>
  <pubDate>Thu, 08 Aug 2013 06:31:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[ISCB-Asia 2013 Translational Bioinformatics Conference]]></title>
  <description><![CDATA[
<p>ISCB-Asia 2013<br />Translational Bioinformatics Conference<br />Seoul, Korea<br />October 2 - 4, 2013</p>

<p>For more information visit: http://www.snubi.org/TBC2013/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/32716/jrfsrf-project-assistant-ii-recruitment-in-national-agri-food-biotechnology-institute-nabi</guid>
  <pubDate>Mon, 15 May 2017 05:37:52 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF/SRF / Project Assistant-II recruitment in National Agri-Food Biotechnology Institute (NABI)]]></title>
  <description><![CDATA[
<p>National Agri-Food Biotechnology Institute<br />ADVT. No: 2017-Researcher (02)</p>

<p>JRF/SRF / Project Assistant-II recruitment in National Agri-Food Biotechnology Institute (NABI)</p>

<p>Essential Qualification: According to the DST (DST OM No.SR/S9/Z-09/2012 dated 21.10.2014) Post Graduate degree in basic science(M.Sc) in Bioinformatics/Computational Biology/Systems Biology/Information Technology with NET or Graduate degree in professional course with NET or Post Graduate Degree (M.Tech) in professional course in Bioinformatics/Computational Biology/Systems Biology/Information Technology. Desirable qualification/skills: 1) Should be proficient in programming in Perl/Python/R language etc. 2) Should have knowledge and skills for data mining in biological sequence database . sequence analysis tools/packages, NGS Analysis . 3) Should have knowledge and skills to work in linux environment and write shell scripts.</p>

<p>Age : 28 years</p>

<p>Hiring Process : Written-test<br />Job Role : Research/JRF/SRF<br />How to apply</p>

<p>Application should be sent to Administrative officer, National Agri-Food Biotechnology Institute, Knowledge City, Sector-81, Mohali so as to reach latest by 30.05.2017 before 5:30 pm.</p>

<p>More at http://www.nabi.res.in/Vacancies/NABI/ResearchFellowships/JRFSRFRA/2017/ADVT.%20No%202017Researcher%20(02)/ApplicationForm.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/33966/ra-bioinformatics-at-national-institute-of-biomedical-genomics-india</guid>
  <pubDate>Wed, 26 Jul 2017 03:49:52 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS,  INDIA]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS<br />(An Autonomous Institution of the Government of India) <br />P.O.: N.S.S., Kalyani 741251, West Bengal</p>

<p>Advertisement No. 137/ESTB/NIBMG/17-18 </p>

<p>Position available Project Description: Several positions are available for the project titled: “A unified web-portal for analysis, integration and visualization of multi-omics data”. The goal of this project is to develop a user-accessible resource for integrated analysis and visualization of multi-OMICs data sets (including gene expression, genotype, methylation, microRNA, etc.). Data sets generated on various platforms shall be maintained in a stable database, accessed through standard querying mechanisms, and the results shall be displayed via user-friendly interface. The analysis engine shall run on open-source software (such as R/Bioconductor) developed in-house. All positions are contractual. </p>

<p>Appointment will be initially given for a period of one year which is extendable depending upon performance, availability of funds and requirements of the institute. </p>

<p>Project Code: 20275 Position: (No. of positions available) </p>

<p>Research Associate (3)</p>

<p>Position 1: Ph.D. or equivalent in statistics, computer science, mathematics, bioinformatics, or related subject. <br />Position 1: Those with experience in database management shall be preferred. Experience with UNIX or GNU/Linux operating system. <br />Position 1: Creation and maintenance of a database for population- and diseaseassociated variation resource. Development of programmatic interface for querying the database, filtering of the results and identification of genes of interest. </p>

<p>Rs. 36000/- + 10% HRA </p>

<p>Please apply online via web link http://apply.nibmg.ac.in/ (no other form of application will be accepted). The last date of application is 14-08-2017. All letters to attend screening test and /or interview will be sent only to the short-listed candidates by Email only. No correspondence will be made with applicants who are not shortlisted /not called for screening test and /or interview. No TA/DA will be paid for attending the screening test and /or interview.<br />Detail information at http://www.nibmg.ac.in/academic/Advt_20275.pdf</p>

<p>More Info: http://www.nibmg.ac.in/?q=Project%20Linked%20Personnel</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/1886/interpretomics</guid>
	<pubDate>Sun, 11 Aug 2013 10:24:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/1886/interpretomics</link>
	<title><![CDATA[InterpretOmics]]></title>
	<description><![CDATA[<p>InterpretOmics, a big data analytics startup that focuses on life sciences, has received angel funding of around Rs 10 crore from a group of investors including Singapore's information technology and shipping company, Amarante.</p><p>http://www.interpretomics.co/</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34479/bioinformatics-lectures</guid>
	<pubDate>Wed, 29 Nov 2017 05:39:54 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34479/bioinformatics-lectures</link>
	<title><![CDATA[Bioinformatics lectures !]]></title>
	<description><![CDATA[<div>
<div>
<div>Computational Biology is a&nbsp;<em style="font-size: 12.8px; font-weight: normal;">huge</em>&nbsp;field of study, that touches upon many distinct algorithmic and biological areas of study. What we are able to cover in this course will depend, in part, on the pace at which we move, which I will attempt to adjust as appropriate. However, here is a tentative list of topics I hope to cover this semester (not necessarily in order).
<ul>
<li>Optimal sequence alignment (global, local, and glocal alignment &amp;mdash with constant &amp; affine gap penalties</li>
<li>Algorithms and data structures for efficient text indexing and&nbsp;<em>exact</em>&nbsp;search</li>
<li>Heuristics for read&nbsp;<em>alignment</em>&nbsp;and&nbsp;<em>mapping</em>&nbsp;&amp;mdash mapping DNA-seq and RNA-seq reads</li>
<li>Genome assembly &amp;mdash k-mers, De Brujin graph construction and representation, long-read technology and read-overlap graph assembly</li>
<li>Motif finding via Gibbs sampling</li>
<li>Gene finding &amp;mdash statistical models for&nbsp;<em>ab initio</em>&nbsp;and evidence-guided prediction of genes</li>
<li>RNA-seq and transcriptomics &amp;mdash transcript assembly, abundance estimation and differential expression testing</li>
<li>Phylogenetics &amp;mdash The small and large phylogeny problem; parsimony, maximum likelihood and Bayesian methods</li>
</ul>
</div>
</div>
</div><p>Address of the bookmark: <a href="https://rob-p.github.io/CSE549F16/lectures/" rel="nofollow">https://rob-p.github.io/CSE549F16/lectures/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/35125/eugene-v-koonin-lab</guid>
  <pubDate>Tue, 09 Jan 2018 05:01:15 -0600</pubDate>
  <link></link>
  <title><![CDATA[Eugene V. Koonin Lab]]></title>
  <description><![CDATA[
<p>Interested in understanding the evolution of life. To obtain glimpses of such understanding, we employ existing and new methods of computational biology to perform research in several major areas.</p>

<p>https://www.ncbi.nlm.nih.gov/research/groups/koonin/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/2534/bioinformatician-needs-ten-heads</guid>
	<pubDate>Sat, 17 Aug 2013 10:30:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/2534/bioinformatician-needs-ten-heads</link>
	<title><![CDATA[Bioinformatician needs ten heads !!!]]></title>
	<description><![CDATA[<p>Bioinformatics demands more and ... lots more knowledge. In this case Ravan, a mythological character from the Ramayan, can only be a real bioinformatician. :) :P</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/2534" length="90547" type="image/jpeg" />
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