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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/24264?offset=270</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26850/wellcome-trustdbt-india-alliance-margdarshi-fellowships-2016</guid>
  <pubDate>Tue, 29 Mar 2016 17:47:39 -0500</pubDate>
  <link></link>
  <title><![CDATA[Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016]]></title>
  <description><![CDATA[
<p>The Wellcome Trust/DBT India Alliance invites application for the Margdarshi Fellowship scheme. The scheme provides a unique opportunity for visionary biomedical scientists to lead and nucleate a cutting edge research program in India in collaboration with Indian Host Institution(s). The potential candidates and the Host Institution are encouraged to make a synergistic effort towards establishing a centre of excellence that aims to improve the existing scientific breadth and utilizes the experience of the lead applicant for developing new research platforms. In addition to this, under this programme two eligible Indian institutions may also come together towards creating a new program under the leadership of a visionary scientist.</p>

<p>Eligibility</p>

<p>Interested applicants must</p>

<p>Have around 10 years of experience as independent investigator, and can be of any age or nationality<br />Have Sponsor(s) at not-for-profit Host Institution(s) in India, who is willing to extend the desired commitment and resources for program implementation<br />Provisions</p>

<p>The 5 year Fellowship provides</p>

<p>Generous personal support for the Fellow<br />Salary support for personnel, which may include Assistant Professors<br />Large quantum of funds for equipment, animals and consumables<br />Funds to attend scientific gatherings, for collaborative visits and to organize meetings<br />Overheads for the Host Institution<br />Process</p>

<p>A joint online application is invited from the Applicant and the Sponsor(s). The details of the scheme and the funding mechanism are available on the website at http://wellcomedbt.org/fellowshiptype/margdarshi-fellowships.</p>

<p>Application form can be accessed at https://fellowships.wellcomedbt.org/Login.aspx</p>

<p>Sponsored applications due by 2 May 2016</p>

<p>Send your inquiries to margdarshi@wellcomedbt.org</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26927/phylographer-graph-visualization-tool</guid>
	<pubDate>Wed, 06 Apr 2016 19:06:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26927/phylographer-graph-visualization-tool</link>
	<title><![CDATA[PhyloGrapher - Graph Visualization Tool]]></title>
	<description><![CDATA[<p><strong>PhyloGrapher</strong><span>&nbsp;is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).</span><strong>PhyloGrapher</strong><span>&nbsp;is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;to visualize any type of relations between elements.&nbsp;</span></p>
<p><span>More at&nbsp;http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html</span></p><p>Address of the bookmark: <a href="http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html" rel="nofollow">http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</guid>
	<pubDate>Fri, 03 Jun 2016 05:06:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</link>
	<title><![CDATA[HistoneDB 2.0 – with variants]]></title>
	<description><![CDATA[<p><span>This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To get started, select a histone type to explore its variants.</span></p>
<p><span>More at&nbsp;http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</span></p><p>Address of the bookmark: <a href="http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/" rel="nofollow">http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28926/scientist-at-advanced-centre-for-treatment-research-and-education-in-cancer-navi-mumbai-maharashtra</guid>
  <pubDate>Tue, 30 Aug 2016 04:16:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Scientist at Advanced Centre for Treatment, Research and Education in Cancer - Navi Mumbai, Maharashtra]]></title>
  <description><![CDATA[
<p>Scientist <br />Advanced Centre for Treatment, Research and Education in Cancer - Navi Mumbai, Maharashtra<br />Scientist (One position) <br />Project: Bioinformatics centre DBT- Sub-DIC at ACTREC <br />Funding agency: DBT Grant No.232 </p>

<p>Duration of the Project: Six Months from the date of appointment can be extended further for six months <br />Essential Qualification and Experience: 1st Class Masters Degree in Bioinformatics or Life Sciences equivalent degree from a recognized University with 4 years R&amp;D experience in Bioinformatics or relevant subjects from recognized institutes. <br />OR <br />Ph.D. degree in Bioinformatics or Life Sciences from recognized University. <br />M.Sc. degree obtained after a one year course will not be considered. <br />Experience: Research/teaching experience in Bioinformatics or relevant subjects form recognized Institute(s). </p>

<p>More at http://www.actrec.gov.in/data%20files/Vacancies/2016/AV-scin-stud-trainee-6-Sept-16.docx</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</guid>
	<pubDate>Sat, 01 Oct 2016 15:04:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</link>
	<title><![CDATA[COSMIC]]></title>
	<description><![CDATA[<p>The accurate description and annotation of structural variants can be complex. &nbsp;This is due to the different resolution that variants are reported from traditional&nbsp;cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple&nbsp;rearrangements in a single area of the genome can make cataloguing and interpreting&nbsp;their effects challenging.&nbsp;</p>
<p>The Rearrangement Overview page describes the one or more breakpoints which make up a structural&nbsp;variant. A breakpoint is defined as a region or point where the sample sequence has altered&nbsp;from the reference sequence. Minimum interpretation is made of this data. One variant event&nbsp;can consist of one or multiple breakpoints. The Syntax (shown above the table) gives a detailed description of the variant and its location &nbsp;(e.g. chr11:g.36585230_76606619del, a deletion of&nbsp;roughly 40Mb on chromosome 11). Syntax is based on HGVS mutation nomenclature recommendations&nbsp;[http://www.hgvs.org/rec.html].&nbsp;</p>
<p>http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</p><p>Address of the bookmark: <a href="http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview" rel="nofollow">http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29915/professor-all-levels-in-bioinformatics-and-computational-biology</guid>
  <pubDate>Tue, 22 Nov 2016 05:43:38 -0600</pubDate>
  <link></link>
  <title><![CDATA[Professor (all levels) in Bioinformatics and Computational Biology]]></title>
  <description><![CDATA[
<p>King Abdullah University of Science and Technology (KAUST) (kaust.edu.sa) is seeking a highly motivated and skilled faculty member for the Bioinformatics track whose research focuses on development of methods and tools for Bioinformatics and Computational Biology.<br />KAUST is an international, graduate-level research university dedicated to advancing science and technology through interdisciplinary research, education, and innovation. Located on the shores of the Red Sea in Saudi Arabia, KAUST offers superb research facilities, generous assured research funding, and internationally competitive salaries, attracting top international faculty, scientists, engineers, and students to conduct fundamental and goal-oriented research to address the world’s pressing scientific and technological challenges in the areas of food, water, energy, and the environment.<br />The successful applicant is expected to develop world-leading research in domain of bioinformatics/computational biology with focus on development of novel computational approaches for efficient and accurate methods of analyzing biological phenomena at molecular level. The faculty member will be part of the Computational Bioscience Research Center (CBRC) within the Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division. The position will remain open until filled.<br /> <br />Requirements:<br /> <br />PhD or equivalent in a Computer Science, Mathematics or Engineering discipline. Candidates should be well-established within the research field relevant to the position grade. They should demonstrate original research and experience at the highest international level.<br /> <br />Responsibilities and tasks:<br /> <br />Research competence in the following areas is preferred:<br />Analysis of next generation sequencing (NGS) and other ‘omics’ data (e.g. CAGE, ChIP-Seq, DHS, RNA-Seq, Ribo-Seq, proteomic, metabolic and NMR spectra, etc.).<br />Signaling, regulatory and metabolic pathways analysis.<br />Development of tools (web-based and standalone) suited for efficient computational biology/bioinformatics.<br /> <br /> <br />Visit cemse.kaust.edu.sa to apply.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29998/csir-nehru-science-postdoctoral-research-fellowship</guid>
  <pubDate>Tue, 29 Nov 2016 12:34:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[CSIR Nehru Science Postdoctoral Research Fellowship]]></title>
  <description><![CDATA[
<p>CSIR Nehru Science Postdoctoral Research Fellowship</p>

<p>About Fellowship: <br />CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows.</p>

<p>It was started to identify promising and young researchers with novel ideas and provide them research opportunities in the areas of basic science, engineering, medicine &amp; agriculture.</p>

<p>The fellowship aims at facilitating their transition from mentored to independent research career.</p>

<p>In addition, check these ICTS Research Fellowships:<br />1.) Max-Planck Partner Group Fellowships 2017-18<br />2.) ICTS-Simons Postdoctoral Fellowships 2017<br />3.) ICTS Post Doctoral Fellowships 2017<br />4.) Airbus Prize Postdoctoral Fellowship 2017-18</p>

<p>Eligibility: To be eligible for this fellowship, you:<br />1.) PhD degree (within 3 years of award of PhD degree), OR<br />2.) Those who have submitted PhD theses.<br />3.) Applicants should have research publications in good impact factor SCI journals.<br />4.) Indian nationals, Persons of Indian Origin (PIO) &amp; Overseas Citizen of India (OCI), a can also apply.<br />5.) Maximum Age Limit: 32 years.</p>

<p>Duration: <br />– 2 Years.<br />– extendable for a maximum of 1 more year based on performance.</p>

<p>Remuneration: <br />– Rs. 50,000/- per month plus House Rent Allowance (HRA)<br />– A contingency grant of Rs. 3.0 lakh per annum.<br />– 25% of the contingency grant can be used for domestic and international travel.</p>

<p>Mode of Selection: You can apply throughout the year, but selection will be made twice a year, in June and December.</p>

<p>How to Apply: <br />– Read the instructions, given at Annexure-I in this PDF file.<br />– And, application form is given as, Annexure-II.<br />– Fill the form &amp; send it to the given address in the PDF file.</p>

<p>Deadline: Rolling Deadline (Applications accepted throughout the year)</p>

<p>Also See: Research Internship/ Fellowship in India:<br />1.) IIT Bombay Research Internship Awards Programme 2016-17<br />2.) IIT Delhi Internship Program 2016-17<br />3.) DAAD WISE – International Internship in Germany<br />4.) Summer Research Fellowship Programme| JNCASR Bangalore<br />5.) Indian Academy of Sciences Summer Internships 2017<br />6.) Winter Internship – IIT Bombay NPDE-TCA<br />7.) Viterbi – India Program 2017 | Research Internship in US<br />8.) Internship – Centre for Stem Cell Research, Vellore</p>

<p>Accommodation &amp; other benefits: <br />– Accommodation may be provided by CSIR, if available.<br />– Medical benefits as per CSIR norms.</p>

<p>For more details: <br />– Check this PDF Notification of Fellowship.<br />– List of CSIR Labs &amp; their work/activities can be seen at www.csir.res.in.</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/428/five-unique-traits-of-effective-computational-biologist</guid>
	<pubDate>Thu, 11 Jul 2013 13:12:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/428/five-unique-traits-of-effective-computational-biologist</link>
	<title><![CDATA[Five unique traits of effective computational biologist]]></title>
	<description><![CDATA[<p>Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a great biological programmer or bioinformatician involves more than writing code that works. The biological programmers who rise to the top ranks of their profession are not only good programmer but also expert in biological stuff. Moreover, In order to be a good and effective biological programmer, you need to possess a combination of traits that allow your computational as well as biological skill, experience, and knowledge to produce working code. There are some technically skilled biological programmers who will never be effective because they lack the other important traits needed. Here are top five traits that are necessary to become a great biological programmer.</p><p><strong>1. Learn and get updated</strong></p><p>Some of the bad biological programmers only learn new technical or non-technical things when it&rsquo;s absolutely necessary. The good biological programmers learn new technical skills proactively. But great biological programmers not only learn new technical skills on their own but also learn non-technical skills, and have an open mind to sources of knowledge that others may shut out.</p><p>In other concrete term, the bad biological programmer learn Perl's regular expression when they started a project on comparative genomics; the good biological programmer learned it a year before because it looked interesting; and the great biological programmer also read about the BioPerl packages, genomics, DNA string, genomic theories, or some similar course of study so that they could understand the results and explain it biologically.</p><p><strong>2. Not a merely coder!!!</strong></p><p>I often encountered with biological programmer who call themself a hard-core computer programmer and avoid biology. I can almost guarantee that if you are one of them then you are not doing research but merely writing "dry" codes.</p><p>According to my supervisor most of the computational biologist, don't know what they are doing biologically. Even they struggle to explain their own programs output and results. Therefore, It is highly advisable to learn basic of biology which can assist you to explain the result and understand your discovery. Always remember you are a researcher not a coder.</p><p><strong>3. Be Social with biologist</strong></p><p>The computational biologist spends most of the time in from of computers, writing codes. They always think their job is to produce working codes, not technical research perfections. But, they are completely wrong. You should not forget that apart from your computational skills you also need some biologist, other than your supervisor, to explain and make you understand the complex biological mechanism.</p><p>I highly recommend your to interact with biotech researchers and learn how do they explain their one graph (which they generally produce after one year of work) biologically. Remember, the origin of your research project is complex biological phenomenon, which is more complex than that of your limited programming rules.</p><p><strong>4. Do not search, research for answers</strong></p><p>Researching for answers means more than typing several keywords into a search engine or posting a question at Stack Overflow or the BioStars forums. I have entered problems into search engines that generate no results, and every question I posted on Stack Overflow or the BioStars forums never got anything resembling an answer, yet I solved the issues and moved on. I&rsquo;m not a magician &mdash; I just know how to find answers or discover root causes.</p><p>Many problems are situational, and if you depend on search engines and forums, you can waste a lot of time going down a rabbit hole and possibly never getting a solution. Learn to perform root cause analysis, learn enough about the underlying system to look for other clues and solutions, and learn to take a long distance view of an issue before deep diving into it.</p><p><strong>5. Love and defend your research</strong></p><p>You cannot rise to the top in this research profession without loving your work. There are some very good &ldquo;it&rsquo;s just a job&rdquo; biological programmers (I&rsquo;ve been one at times), but if that is your outlook, you won&rsquo;t be willing to do whatever it takes to succeed. This idea gets a lot of folks in a huff, because they feel it is a personal insult. &ldquo;I&rsquo;m a good programmer, but I have other priorities and can&rsquo;t make work my life.&rdquo; I understand completely; I have other priorities too. As much as I hate to say it, when I am passionate about my work, I am willing (though not eager) to abandon my other priorities to finish the job. It is not an insult to say that if you aren&rsquo;t willing to pull out all the stops you can&rsquo;t be the best, it is a fact.</p><p>You must be passionate about more than programming &mdash; you must also be excited about your research, the tools and technology you are using, and so on. I have seen very good and even great biological programmers operating at mediocre levels because something was not a good fit, such as they hated the project or were using a technology they disliked. Therefore, like your research project and get excited about your discoveries. You have not only to discover but also defend your finding with scientific words.</p><p>Thanks to all of you for reading.</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/851/the-institute-for-molecular-bioscience-imb-bailey-lab</guid>
  <pubDate>Sun, 14 Jul 2013 11:53:08 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Institute for Molecular Bioscience (IMB), Bailey Lab]]></title>
  <description><![CDATA[
<p>Pattern recognition and computational biology</p>

<p>MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription</p>

<p>Specialization:<br />Pattern recognition and modelling in computational biology</p>

<p>Link @ http://www.imb.uq.edu.au/tim-bailey</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32076/ngs-teaching-material</guid>
	<pubDate>Wed, 05 Apr 2017 04:29:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32076/ngs-teaching-material</link>
	<title><![CDATA[NGS teaching material]]></title>
	<description><![CDATA[<p><span>High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which little previous sequence information is available, pose specific problems. This course addresses the specific strengths and weaknesses of alternative HTS technologies, the computational resources needed for HTS, and how to analyze non-model species using HTS. The course consists of a practical training module, HTS bioinformatics training, and lecturing/seminars of HTS approaches specifically targeting non-model organisms.</span></p><p>Address of the bookmark: <a href="http://marinetics.org/teaching/hts/Assembly.html" rel="nofollow">http://marinetics.org/teaching/hts/Assembly.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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