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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/25400?offset=490</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34546/comparative-genomics-scripts</guid>
	<pubDate>Wed, 06 Dec 2017 15:20:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34546/comparative-genomics-scripts</link>
	<title><![CDATA[Comparative genomics scripts]]></title>
	<description><![CDATA[<p>Comparative genomics educational material and papers bookmarks</p>
<p>https://github.com/iansealy/coursera-comparinggenomes</p><p>Address of the bookmark: <a href="https://github.com/iansealy/coursera-comparinggenomes" rel="nofollow">https://github.com/iansealy/coursera-comparinggenomes</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37259/epiviz-an-interactive-visualization-tool-for-functional-genomics-data</guid>
	<pubDate>Mon, 09 Jul 2018 05:27:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37259/epiviz-an-interactive-visualization-tool-for-functional-genomics-data</link>
	<title><![CDATA[Epiviz: an interactive visualization tool for functional genomics data.]]></title>
	<description><![CDATA[<p><span>Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the&nbsp;</span><a href="http://barcode.luhs.org/" target="_blank">Gene Expression Barcode project</a><span>&nbsp;for transcriptome visualization. It has a flexible plugin framework so users can add</span><a href="http://d3js.org/" target="_blank">d3</a><span>&nbsp;visualizations. You can see a video tour&nbsp;</span><a href="http://youtu.be/099c4wUxozA" target="_blank">here</a><span>.</span></p>
<p><span>https://bioconductor.org/packages/release/bioc/html/epivizr.html</span></p>
<p><span>https://github.com/epiviz</span></p>
<p><span>https://github.com/epiviz/epiviz</span></p><p>Address of the bookmark: <a href="https://epiviz.github.io/" rel="nofollow">https://epiviz.github.io/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/14904/bioinformatics-jrfsrf-position-at-iari</guid>
  <pubDate>Thu, 04 Sep 2014 04:14:01 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at IARI]]></title>
  <description><![CDATA[
<p>DIVISION OF NEMATOLOGY<br />INDIAN AGRICULTURAL RESEARCH INSTITUTE<br />NEW DELHI 110012<br />Applications are invited for the posts of one Junior<br />Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics - insilico resource development”. The project is for a period of three years. </p>

<p>Essential qualifications for JRF<br />: M. Sc. in Bioinformatics with experience in Proteomics, genomics and structural biology. Knowledge of programming language, pearl and database – HTML, CSS,php and Java script.<br />Essential qualifications for Research Associate:<br />MSc/MTech in Bioinformatics with three years experience or Ph.D in Bioinformatics with experience in proteomics, genomics and structural biology. Knowledge of programming language, perl and database<br />– HTML, CSS, Java script. NGS sequence assembly and analysis and algorithm designing.<br />Age limit : 35 years maximum (5 year relaxation for SC/ST and women candidates)<br />Emoluments:<br />JRF: 16,000 + 30% HRA<br />.<br />Res Assoc: Rs22,000 + 30% HRA<br />The post is purely temporary in nature and is co-terminus with the project. The appointment would be initially for one year and may be extended further upon satisfactory performance.<br />Interested candidates<br />should send the duly filled application forms (format in the following page ) so as to reach on or before 20.9.2014 along with all the relevant documents.</p>

<p>More at http://www.iari.res.in/files/JRF_RA-03092014-20140903-135319.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/40305/naab-doak-graduate-fellowship-bovine-genomics-course</guid>
  <pubDate>Thu, 28 Nov 2019 21:45:35 -0600</pubDate>
  <link></link>
  <title><![CDATA[NAAB Doak Graduate Fellowship bovine genomics course]]></title>
  <description><![CDATA[
<p>This is a reminder for all that seek a fully funded MSc in bovine genetics, or those that know talented BSc students who want to progress their education.<br /> <br />The deadline for the NAAB Doak Graduate Fellowship is less than a month away.<br /> <br />Applications are accepted until the 1st of December.<br /> <br />Please check the attachment or visit our website for further details:<br /> <br />https://www.naab-css.org/news/-naab-doak-graduate-fellowship<br /> <br />Sophie Eaglen<br />NAAB</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/15000/which-mathstatistics-programming-languageapplication-do-you-most-frequently-use-in-bioinformatics</guid>
	<pubDate>Thu, 04 Sep 2014 17:46:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/15000/which-mathstatistics-programming-languageapplication-do-you-most-frequently-use-in-bioinformatics</link>
	<title><![CDATA[Which math/statistics programming language/application do you most frequently use in bioinformatics?]]></title>
	<description><![CDATA[<p>I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?</p>]]></description>
	<dc:creator>John Parker</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41009/genomics-public-data-links</guid>
	<pubDate>Thu, 13 Feb 2020 00:20:00 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41009/genomics-public-data-links</link>
	<title><![CDATA[genomics public data links !]]></title>
	<description><![CDATA[<p>List of publically available databases on google server.</p>
<p>More at <a href="https://software.broadinstitute.org/gatk/download/bundle">https://software.broadinstitute.org/gatk/download/bundle</a></p>
<p><a href="ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/">ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/</a>.</p>
<p><a href="ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/">ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/</a></p><p>Address of the bookmark: <a href="https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0?pli=1" rel="nofollow">https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0?pli=1</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17186/urdip-pune-bioinformatics-srfpa-openings</guid>
  <pubDate>Sat, 20 Sep 2014 20:48:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[URDIP Pune Bioinformatics SRF/PA Openings]]></title>
  <description><![CDATA[
<p>CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS<br />NCL Campus, S.No.113,114, Pashan, Pune 411 008</p>

<p>ADVERTISEMENT NO. - URDIP/ 5/2014</p>

<p>Learning opportunity for young Science and Engineering professionals to make a career in Information Science Industry CSIR has set up a Unit for Research and Development of Information Products (CSIR-URDIP) at Pune to work in the area of Scientific Informatics (ChemBioinformatics/Patent Informatics/Phytoinformatics/Toxinformatics) and related<br />software development projects.</p>

<p>Applications are invited from CSIR - UGC NET Qualified Candidates for consideration as Project Fellow (PF) and/or Senior Project Fellow (SPF) based on the experience to work on existing and new projects at CSIRURDIP.</p>

<p>Project Fellow</p>

<p>    Remuneration - (Rs. 16,000.00 + 20% HRA)</p>

<p>    M. Sc. In Biochemistry/Microbiology/Bioinformatics [Post-code A02] only with minimum of 55% marks</p>

<p>Senior Project Fellow</p>

<p>    Remuneration - (Rs. 18,000.00 + 20% HRA)</p>

<p>    M. Sc. in Biochemistry/Microbiology/Bioinformatics [Post-code A05] only with minimum of 55% marks plus two years research or relevant informatics experience</p>

<p>Please visit www.urdip.res.in/career.htm to apply online by 30th September, 2014.</p>

<p>Successful candidates who have appeared for NET exam in 2012 and 2013 are only eligible to apply.</p>

<p>Advertisement: http://115.112.95.114/urhr/download/Advt5_2014.pdf</p>
]]></description>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42570/breeding-insight</guid>
	<pubDate>Wed, 06 Jan 2021 19:49:21 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42570/breeding-insight</link>
	<title><![CDATA[Breeding Insight]]></title>
	<description><![CDATA[<p><span><span>Breeding Insight&nbsp;at Cornell University will leverage recent improvements in genomics and open source informatics components, and in&nbsp;partnership with small breeding programs, will enable these programs to harness&nbsp;&nbsp;powerful digital tools to accelerate their genetic gains</span></span></p>
<p><span>Breeding Insight is funded by&nbsp;the&nbsp;</span><span><a href="https://www.ars.usda.gov/about-ars/" target="_blank">U.S. Department of Agriculture (USDA) Agricultural Research Service (ARS)</a></span><span>&nbsp;through Cornell University. The USDA ARS delivers scientific solutions to national and global agricultural challenges. As a global leader&nbsp;in agricultural discovery through scientific excellence, ARS is committed to delivering cutting-edge, scientific tools and innovative solutions for American farmers, producers, industry, and communities to support the nourishment and well-being of all people; sustaining our nation&rsquo;s agroecosystems and natural resources; and ensuring the economic competitiveness and excellence of our agriculture.</span></p><p>Address of the bookmark: <a href="https://www.breedinginsight.org/" rel="nofollow">https://www.breedinginsight.org/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17189/bioinformatics-svims-project-assistant-walk-in</guid>
  <pubDate>Sat, 20 Sep 2014 21:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SVIMS Project Assistant Walk IN]]></title>
  <description><![CDATA[
<p>SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES<br />TIRUPATI, ANDHRA PRADESH, INDIA- 517 507<br />BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS</p>

<p>Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS Bioinformatics centre under the BTISnet Project entitled “Creation of Bioinformatics Infrastructure Facility for promotion of Biology teaching through Bioinformatics” on 25.09.2014 at 11 AM in SVIMS, Tirupati. The engagement will be made purely on temporary basis for a period of one year and it can be terminated at any time without notice or without assigning any reason thereof by the Coordinator of the Project. The person engaged shall not be entitled for any claim implicit or explicit for absorption in the University.</p>

<p>1. Name of the post : Project Assistant</p>

<p>2. Qualification :<br />i) Essential : MSc Bioinformatics/MTech (Biotechnology/Bioinformatics)</p>

<p>ii) Desirable : Experience in Bioinformatics research work (Preference will be given to candidates  qualified in BINC/UGC/CSIR/NET/GATE)</p>

<p>3. Remuneration : 16000 + 10% HRA for NET/GATE candidates 14000 + 10% HRA for M. Tech / M.Sc. Candidates</p>

<p>4. Place of posting : Tirupati</p>

<p>5. Duration of the Project : One year</p>

<p>Terms and conditions:</p>

<p>1. Candidates are required to submit the Biodata relevant certificates in support of their age and educational qualification etc., before the interview committee, SVIMS University, Tirupati.</p>

<p>2. Candidates called for interview will attend the interview at their own cost.<br />3. Interim enquiries will not be entertained.<br />4. The maximum age limit for Project Assistant is 28 years for general category and 33 years for SC and ST category candidates as on 25th September, 2014.</p>

<p>Advertisement:</p>

<p>http://svr98.ehostpros.com/~svimsb98/Project%20Assistant_notification.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/45278/the-day-we-began-reading-the-dna-of-the-world</guid>
	<pubDate>Sat, 05 Sep 2026 01:43:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/45278/the-day-we-began-reading-the-dna-of-the-world</link>
	<title><![CDATA[The Day We Began Reading the DNA of the World]]></title>
	<description><![CDATA[<div>Picture waking up and knowing that in one lab, a scientist is reading the DNA of a whale. In another, a team is sequencing a rare plant. Meanwhile, researchers in India are decoding the genomes of different human populations.</div><div>&nbsp;</div><div>Many organisms. Many countries. All share one remarkable goal: to understand the genetic story of life.</div><div>DNA is nature's instruction manual, written with just four letters: A, T, C, and G. For years, scientists could only read small sections of this huge book. Now, new sequencing technology lets us read entire genomes like never before.</div><div>&nbsp;</div><div>One of the most ambitious projects is the Earth BioGenome Project (EBP). Its goal is to create reference genomes for about 1.5 million known eukaryotic species. This project links genome research across continents, species, and scientific fields.</div><div>&nbsp;</div><div>But this story goes beyond just animals and plants.</div><div>&nbsp;</div><div><strong>A New Chapter in Human Genomics</strong></div><div>&nbsp;</div><div>Large human genome projects are changing how we understand our own genetic diversity.</div><div>India's GenomeIndia project has sequenced thousands of people from different populations. This work is uncovering genetic variation that global databases have often missed.</div><div>&nbsp;</div><div>Similar population-scale effSimilar large-scale projects are happening worldwide. The All of Us Research Program in the United States, Europe's 1+ Million Genomes initiative, South Korea's national genomic data program, and projects in Saudi Arabia, Australia, and Singapore are all building huge genomic resources.collect DNA.</div><div>&nbsp;</div><div>The real goal is to link genomes with health, disease, and other biological information. This creates a base for more accurate research and, in time, more personalized medicine.</div><div>&nbsp;</div><div><strong>A Race Against Time</strong></div><div>&nbsp;</div><div>There is also an important twist.</div><div>&nbsp;</div><div>We are sequencing Earth's biodiversity even as many species face growing environmental threats.</div><div>A genome alone cannot save a species, but it does keep important information about its biology, evolution, and genetic diversity. This knowledge helps scientists understand risks, guide conservation, and find traits that could help agriculture or medicine.</div><div>&nbsp;</div><div>Projects like the Darwin Tree of Life, which studies species in Britain and Ireland, and the African BioGenome Project, which is growing genomics work across Africa, are key parts of this worldwide effort.</div><div>&nbsp;</div><div>Projects to Watch</div><ol>
<li>Earth BioGenome Project (EBP) - A global effort to sequence and annotate roughly 1.5 million known eukaryotic species and create a comprehensive reference library of Earth's biodiversity.</li>
<li>Vertebrate Genomes Project (VGP) - Focuses on producing high-quality reference genomes for vertebrate species, providing a major foundation for the wider Tree of Life.</li>
<li>Darwin Tree of Life - A UK and Ireland initiative aiming to sequence approximately 70,000 species, creating a detailed genomic map of regional biodiversity.</li>
<li>African BioGenome Project (AfricaBP) - A pan-African initiative focused on sequencing Africa's biodiversity while strengthening genomics and bioinformatics capacity across the continent.</li>
<li>European Reference Genome Atlas (ERGA) - A European effort to generate high-quality reference genomes for Europe's biodiversity and connect national sequencing efforts.</li>
<li>Canada BioGenome Project - Building reference genomes for Canadian biodiversity, supporting conservation, research and the study of ecosystems.</li>
<li>California Conservation Genomics Project - Uses genomics to understand and protect California's biodiversity and help inform conservation decisions.</li>
<li>Bat1K - An ambitious global effort to sequence the genomes of all known bat species, helping scientists study their evolution, longevity, immunity and unique biology.</li>
<li>Bird 10,000 (B10K) - A global project aiming to create genome resources covering the world's bird diversity and reconstruct avian evolutionary history.</li>
<li>Global Invertebrate Genomics Alliance (GIGA) - Builds genomic resources for the enormous and genetically diverse world of invertebrates.</li>
<li>GenomeIndia - India's national human-genome initiative, designed to capture the country's extraordinary population diversity and create a reference resource for Indian genomics.</li>
<li>All of Us Research Program - A US national research program combining genomic information with health and lifestyle data at population scale.</li>
<li>1+ Million Genomes / Genome of Europe - A European effort to enable secure, cross-border use of genomic and health data and develop genome-scale resources involving more than one million people.</li>
<li>Korea National Integrated Bio Big Data Project - South Korea's large-scale national effort combining genomic and health information from a very large population cohort.</li>
<li>Saudi Genome Program - A national genomics initiative focused on genetic diseases, population genomics and precision medicine in Saudi Arabia.</li>
<li>Australian Genomics / Genomics Health Futures Mission - Australia's growing investment in genomic medicine, rare disease research and population-scale health genomics.</li>
</ol><div><strong>The Library of Life</strong></div><div>&nbsp;</div><div>The fuThe future of genomics is not just about sequencing one genome at a time. Now, it is about creating a worldwide network of genomes&mdash;human and non-human, individual and species&mdash;linked by powerful databases and advanced computational tools.ine a library without shelves.</div><div>&nbsp;</div><div>In this library, the books are genomes. The pages are made of DNA. Scientists and machines are the readers. And this library is still being written. Each genome sequenced today adds a new page to the story of life and helps us better understand our place in it.</div>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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