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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26306?offset=1430</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41675/gapfinisher-a-reliable-gap-filling-pipeline-for-sspace-longread-scaffolder-output</guid>
	<pubDate>Thu, 14 May 2020 15:13:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41675/gapfinisher-a-reliable-gap-filling-pipeline-for-sspace-longread-scaffolder-output</link>
	<title><![CDATA[gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output]]></title>
	<description><![CDATA[<p>gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines.</p>
<p>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/</p><p>Address of the bookmark: <a href="https://github.com/kammoji/gapFinisher" rel="nofollow">https://github.com/kammoji/gapFinisher</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42132/squeezemeta-a-fully-automated-metagenomics-pipeline-from-reads-to-bins</guid>
	<pubDate>Mon, 17 Aug 2020 05:25:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42132/squeezemeta-a-fully-automated-metagenomics-pipeline-from-reads-to-bins</link>
	<title><![CDATA[SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins]]></title>
	<description><![CDATA[<p>SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures. Thus, SqueezeMeta features several unique characteristics:</p>
<ol>
<li>Co-assembly procedure with read mapping for estimation of the abundances of genes in each metagenome</li>
<li>Co-assembly of a large number of metagenomes via merging of individual metagenomes</li>
<li>Includes binning and bin checking, for retrieving individual genomes</li>
<li>The results are stored in a database, where they can be easily exported and shared, and can be inspected anywhere using a web interface.</li>
<li>Internal checks for the assembly and binning steps inform about the consistency of contigs and bins, allowing to spot potential chimeras.</li>
<li>Metatranscriptomic support via mapping of cDNA reads against reference metagenomes</li>
</ol><p>Address of the bookmark: <a href="https://github.com/jtamames/SqueezeMeta" rel="nofollow">https://github.com/jtamames/SqueezeMeta</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43384/lncpipea-nextflow-based-pipeline-for-comprehensive-analyses-of-long-non-coding-rnas-from-rna-seq-datasets</guid>
	<pubDate>Fri, 17 Sep 2021 01:57:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43384/lncpipea-nextflow-based-pipeline-for-comprehensive-analyses-of-long-non-coding-rnas-from-rna-seq-datasets</link>
	<title><![CDATA[LncPipe:A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets]]></title>
	<description><![CDATA[<p><span>The pipeline was developed based on a popular workflow framework&nbsp;</span><a href="https://github.com/nextflow-io/nextflow">Nextflow</a><span>, composed of four core procedures including reads alignment, assembly, identification and quantification. It contains various unique features such as well-designed lncRNAs annotation strategy, optimized calculating efficiency, diversified classification and interactive analysis report.&nbsp;</span><a href="https://github.com/likelet/LncPipe">LncPipe</a><span>&nbsp;allows users additional control in interuppting the pipeline, resetting parameters from command line, modifying main script directly and resume analysis from previous checkpoint.</span></p>
<p>Ref&nbsp;https://www.lncrnablog.com/lncpipe-a-nextflow-based-pipeline-for-identification-and-analysis-of-long-non-coding-rnas-from-rna-seq-data/</p>
<p><img src="https://ars.els-cdn.com/content/image/1-s2.0-S1673852718301176-gr1.jpg" alt="image" style="border: 0px;"></p><p>Address of the bookmark: <a href="https://github.com/likelet/LncPipe" rel="nofollow">https://github.com/likelet/LncPipe</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/4220/cv-of-dr-pranjal-chandra</guid>
	<pubDate>Wed, 04 Sep 2013 11:15:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/4220/cv-of-dr-pranjal-chandra</link>
	<title><![CDATA[CV of Dr. Pranjal Chandra]]></title>
	<description><![CDATA[]]></description>
	<dc:creator>Pranjal Chandra PhD</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/4220" length="394752" type="application/msword" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/14868/bioinformaticians-summer-vacation</guid>
	<pubDate>Wed, 03 Sep 2014 13:11:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/14868/bioinformaticians-summer-vacation</link>
	<title><![CDATA[Bioinformatician&#039;s summer vacation !!!]]></title>
	<description><![CDATA[<p>Yes, the bioinformatician do spend their summer vacation like this. They spend more time on cheking the JOBS running on various servers.</p>]]></description>
	<dc:creator>Jit</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/14868" length="638462" type="image/png" />
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21472/asst-professor-at-central-university-of-jharkhand-cuj</guid>
  <pubDate>Sun, 01 Mar 2015 01:17:52 -0600</pubDate>
  <link></link>
  <title><![CDATA[Asst. Professor at Central University of Jharkhand (CUJ)]]></title>
  <description><![CDATA[
<p>Central University of Jharkhand (CUJ) has issued a recruitment notification for the recruitment of Assistant Professor through recruitment notification – Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015. Candidates who have completed M.Sc, Ph.D can apply for the new recruitment notification from Central University of Jharkhand (CUJ)</p>

<p>Central University of Jharkhand has been granted funds by the Department of Biotechnology (DBT), Govt. of India to establish “DBT-Boost to CUJ Interdisciplinary Life Sciences Departments for Education and Research” Applications are invited for the Assistant Professor on purely temporary basis. The appointments shall be initially for a period of one year, renewable every year depending on the satisfactory performance, till the end of project.</p>

<p>Position: ASSISTANT PROFESSOR (Total 03)<br />Salary: 45,000/- (fixed) per month<br />Essential Qualifications: i. Good academic record with at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed) at the master’s degree level with specialization in Biodiversity and Systematic/ Systems Biology/ Biophysics/ Bioinformatics from an Indian  University, or an equivalent degree from an accredited foreign university. ii. Besides fulfilling the above qualifications, the candidates must have cleared the National Eligibility Test (NET) conducted by the UGC, CSIR or similar test accredited by the UGC like SLET/SET. iii. Notwithstanding anything contained in i. and ii. candidates, who are or have been awarded Ph.D Degree in accordance with the University Grants Commission (Minimum Standards and Procedure for Award of Ph.D. Degree) Regulation, 2009, shall be exempted from therequirement of the minimum eligibility condition of NET/SLET/SET for recruitment and appointment of Assistant Professor. iv. NET/SLET/SET shall also not be required for such disciplines for which NET/SLET/SET in not conducted.<br />Desirable: Preference will be given to candidates having Ph.D in any of the above mentioned areas with NET</p>

<p>IMPORTANT DATES TO REMEMBER  :</p>

<p>Last Date to Apply for this job 24/3/2015</p>

<p>REFERENCE:</p>

<p>Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015.</p>

<p>More at http://cuj.ac.in/careers.php</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/36647/bioinformatics-jobs-at-nibmg</guid>
  <pubDate>Wed, 16 May 2018 02:57:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics jobs at NIBMG]]></title>
  <description><![CDATA[
<p>NIBMG are looking for bright and motivated people in our big projects on cutting edge biomedical genomics research</p>

<p>http://www.nibmg.ac.in/academic/SyMeC-ICGC/SyMeC%20&amp;%20ICGC_May%202018.pdf</p>

<p>http://www.nibmg.ac.in/academic/plp/15_05_2018/AdvertisementMay2018.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21624/ra-bioinformatics-at-ch-charan-singh-university-meerut</guid>
  <pubDate>Wed, 11 Mar 2015 09:07:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Ch. Charan Singh University, Meerut]]></title>
  <description><![CDATA[
<p>Ch. Charan Singh University, Meerut</p>

<p>http://molbiolabccsumrt.webs.com/</p>

<p>Applications are invited for one post of RA in a DBT funded research project “Creation of Bioinformatics Infrastructure Facility (BIF) for the promotion of Biology Teaching through Bioinformatics (BTBI) Scheme of BTISet”.</p>

<p>Candidate should have a Ph.D. degree in Bioinformatics/Biotechnology/Genetics and Plant Breeding with adequate experience in the area of Bioinformatics. If a suitable candidate for the post of RA is not available, a JRF/SRF may be appointed.</p>

<p>Candidate for the post of JRF/SRF should have Master’s degree in relevant subject with adequate experience in the area of Bioinformatics and should be NET/DBT-BINC qualified</p>

<p>Interested candidates may send their bio-data to Prof. H. S. Balyan (hsbalyan@gmail.com) (in exceptional case, bio-data may also be submitted at the time of interview) and attend the interview on Monday, March 30, 2015 at 11:00 AM in the Department of Genetics &amp; Plant Breeding, Ch. Charan Singh University, Meerut. Candidates shall bring their original documents at the time of interview for verification. No interview letters will be issued and no TA/DA will be paid.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41689/medaka-sequence-correction-provided-by-ont-research</guid>
	<pubDate>Mon, 18 May 2020 16:28:00 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41689/medaka-sequence-correction-provided-by-ont-research</link>
	<title><![CDATA[medaka: Sequence correction provided by ONT Research]]></title>
	<description><![CDATA[<p><code>medaka</code><span>&nbsp;is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods, whilst being much faster.</span></p><p>Address of the bookmark: <a href="https://github.com/nanoporetech/medaka" rel="nofollow">https://github.com/nanoporetech/medaka</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</guid>
	<pubDate>Tue, 17 Mar 2015 00:47:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</link>
	<title><![CDATA[Coding Ground]]></title>
	<description><![CDATA[<p>Online coding group for most of the programming languages.</p>
<p>Code in almost all popular languages using Coding Ground.&nbsp;Edit, compile, execute and share your projects, 100% cloud.</p>
<p>http://www.tutorialspoint.com/codingground.htm</p><p>Address of the bookmark: <a href="http://www.tutorialspoint.com/codingground.htm" rel="nofollow">http://www.tutorialspoint.com/codingground.htm</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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