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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26306?offset=1580</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28618/jrf-bioinformatics-at-dpu-india</guid>
  <pubDate>Fri, 05 Aug 2016 03:06:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at DPU, India]]></title>
  <description><![CDATA[
<p>Advertisement for position of “JRF (Junior Research Fellow)” on DST research project “Molecular modeling and docking studies on Deguelin and its derivatives with cell cycle arrest, apoptosis and anti-angiogenesis pathway proteins in cancer cell signaling pathway”</p>

<p>Applications are invited on plain paper from eligible candidates along with biodata and copies of certificates in support of age, qualification and experience for the following position:</p>

<p>Particulars Description</p>

<p>1. Position &amp; No. JRF (Junior Research Fellow) 01</p>

<p>2. Title of the Project Molecular modeling and docking studies on Deguelin and its derivatives with cell cycle arrest, apoptosis and anti-angiogenesis pathway proteins in cancer cell signaling pathway</p>

<p>3. Tenure 3 years</p>

<p>4. Investigator Dr. K. V.Swamy</p>

<p>5. Institute Dr. D. Y. Patil Biotechnology and Bioinformatics Institute, Tathawade, Pune 411033.</p>

<p>5. Qualifications/Eligibility</p>

<p>Essential: NET (National Eligibility Test) qualified M. Sc Bioinformatics/ M. Tech Bioinformatics/M. Sc Biotechnology/M. Tech Biotechnology or Graduate degree in Professional course with NET qualification or Post graduation degree in professional course</p>

<p>The following examinations conducted by various Central Government Departments/Agencies are considered as National Eligibility Test (NET).</p>

<p>1. CSIR-UGC-LS <br />2. GATE (Graduate Aptitude Test in Engineering) <br />3. JAM (Joint Admission Test) <br />4. GPAT (Graduate Pharmacy Aptitude Test) <br />5. BET(Biotechnology Eligibility Test) <br />6. BINC(Bioinformatics National Consortium) <br />7. JEST( Joint Entrance Screening Test) <br />8. JGEEBILS(Joint Graduate Entrance Examination for Biology &amp; Interdisciplinary Life Sciences) <br />9. NBHM Ph.D scholarship Screening Test <br />10. ICMR- JRF Entrance Examination <br />11. AICE (ICAR-All India competitive Examination ) <br />(For all above examinations valid score considered at the time of interview)</p>

<p>Desirable: Knowledge and skills in Bioinformatics tools/ softwares</p>

<p>6. Monthly Emoluments Rs.25,000/ (As per DST-SERB rules)</p>

<p>7. Last date for submission of prescribed application 20/08/2016</p>

<p>Kindly send your applications to “Dr. K. V. Swamy, Asst.Professor, Dr. D. Y. Patil Biotechnology &amp; Bioinformatics Institute, Survey No. 87/88, Mumbai-Pune Express Way, Tathawade, Pune - 411033, Maharashtra, India”. Highlight the envelope with “Application for post of JRF (Junior Research Fellow)”.</p>

<p>Note: No TA/DA will be paid for attending the interview.</p>

<p>Advertisement: http://careers.dpu.edu.in/Biotech.aspx</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39869/mfannot-a-program-for-the-annotation-of-mitochondrial-and-plastid-genomes</guid>
	<pubDate>Mon, 26 Aug 2019 11:47:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39869/mfannot-a-program-for-the-annotation-of-mitochondrial-and-plastid-genomes</link>
	<title><![CDATA[MFannot : a program for the annotation of mitochondrial and plastid genomes]]></title>
	<description><![CDATA[<p><span>MFannot is a program for the annotation of mitochondrial and plastid genomes</span></p>
<p>MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools.</p>
<p>It makes intense use of RNA/intron detection tools including&nbsp;<a href="http://hmmer.org/">HMMER</a>,&nbsp;<a href="https://github.com/nathanweeks/exonerate">Exonerate</a>,&nbsp;<a href="https://bioinformatics.ca/links_directory/tool/9822/erpin">Erpin</a>&nbsp;and others.</p>
<p><a href="http://megasun.bch.umontreal.ca/cgi-bin/mfannot/mfannotInterface.pl">http://megasun.bch.umontreal.ca/cgi-bin/mfannot/mfannotInterface.pl</a></p><p>Address of the bookmark: <a href="https://github.com/BFL-lab/Mfannot" rel="nofollow">https://github.com/BFL-lab/Mfannot</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41602/nucdiff-in-depth-characterization-and-annotation-of-differences-between-two-sets-of-dna-sequences</guid>
	<pubDate>Tue, 05 May 2020 10:35:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41602/nucdiff-in-depth-characterization-and-annotation-of-differences-between-two-sets-of-dna-sequences</link>
	<title><![CDATA[NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences]]></title>
	<description><![CDATA[<p>NucDiff locates and categorizes differences between two closely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly suitable to compare assemblies with each other or with available reference genomes.</p>
<p>NucDiff provides information about the types of differences and their locations. It is possible to upload the results into genome browser for visualization and further inspection. It was written in Python and uses the NUCmer package from MUMmer[1] for sequence comparison.</p>
<p><br><br></p><p>Address of the bookmark: <a href="https://github.com/uio-cels/NucDiff" rel="nofollow">https://github.com/uio-cels/NucDiff</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28802/research-associate-bioinformatics-recruitment-in-icgeb-new-delhi</guid>
  <pubDate>Tue, 16 Aug 2016 03:38:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics recruitment in ICGEB, New Delhi]]></title>
  <description><![CDATA[
<p>Research Associate Bioinformatics recruitment in ICGEB, New Delhi </p>

<p>Project :“Genetic Transformation and Development of Elite Transgenic Maize (Zea mays L.) for Biotic and Abiotic Stresses Tolerance”.</p>

<p>Qualification: Ph.D. degree in:Biotechnology/Bioinformatics/Biochemistry/Plant Molecular Biology/Plant Physiology/Botany or any related area with evidence of prior experience in maize transformation.</p>

<p>Additional experience in plant transformation of any cereal crop would be preferable.</p>

<p>The appointment would initially be for one year.</p>

<p>How to apply<br />Interested applicants should send their detailed CV including brief synopsis regarding the previous research experience (along withcontact email address by email) to: Dr. Tanushri Kaul (tanushri@icgeb.res.in). Group Leader, Nutritional Improvement of Crops Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110 067.</p>

<p>Closing date for applications: 22 August 2016.</p>

<p>More at http://www.icgeb.org/vacancies.html</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28851/senior-manager-bioinformatics-operations-at-rgcb-india</guid>
  <pubDate>Fri, 19 Aug 2016 04:37:17 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Manager (Bioinformatics Operations) at RGCB, India]]></title>
  <description><![CDATA[
<p>Senior Manager (Bioinformatics Operations) <br />Rajiv Gandhi Centre for Biotechnology (RGCB) - Thiruvananthapuram, Kerala <br />₹15,600 - ₹39,100 a month<br />Rajiv Gandhi Centre for Biotechnology (RGCB) invites applications for the following positions from Indian citizens with prescribed qualifications </p>

<p>Senior Manager (Bioinformatics Operations) <br />No. of posts: 01 (General) <br />Pay Scale: PB-3 15600-39100 + Grade Pay Rs.6600/- <br />Min. Qualification: PhD in Bioinformatics, , Life Sciences or Computer Science applied to biological questions. <br />A Min. 5 years of experience <br />Age limit: 40 years as on August 01, 2016</p>

<p>More at http://www.rgcb.res.in/positions.php</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28889/project-scientist-at-national-agri-food-biotechnology-institute-nabi</guid>
  <pubDate>Thu, 25 Aug 2016 05:49:36 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Scientist at National Agri-Food Biotechnology Institute (NABI)]]></title>
  <description><![CDATA[
<p>Advt. No. NABI/8(18)/2012-PME-3<br />Project Scientist recruitment in National Agri-Food Biotechnology Institute (NABI)<br />Project Title : “Transfer and Evaluation of Indian Banana with Pro-Vitamin A (PVA) Constructs”<br />Essential qualifications:  Ph.D. thesis submitted/awarded in any branch of life/plant sciences. Desirable qualification: a) Excellent academic record with research experience in area relevant to plant metabolic engineering, molecular biology and bioinformatics supported with high quality publications. b) Knowledge and experience of Chromatography and Mass Spectrometry based technological analysis of samples. c) Knowledge and experience of in-silico analysis such as trascriptomics, proteomics and genomics. c) Relevant research publications in reputed international journals with high impact factors.<br />No. of Post : 01<br />Age: 35 years<br />Emoluments:  Rs.40,000/- per month.<br />How to apply<br />Walk-In-Interview on 29/08/2016 at National Agri-Food Biotechnology Institute, C-127, Industrial Area, Phase VIII, S.A.S. Nagar, Mohali-160 071 Email: siddharth@nabi.res.in</p>

<p>More at http://www.nabi.res.in/Vacancies/NABI/ResearchFellowships/JRFSRFRA/2016/NABI8(18)2012-PME-3/Advt.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34914/ra-assembler-a-de-novo-dna-assembler-for-third-generation-sequencing-data</guid>
	<pubDate>Wed, 27 Dec 2017 20:36:54 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34914/ra-assembler-a-de-novo-dna-assembler-for-third-generation-sequencing-data</link>
	<title><![CDATA[Ra assembler - a de novo DNA assembler for third generation sequencing data]]></title>
	<description><![CDATA[<p>Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS).</p>
<p>Ra is in development since 2014 in the form of several separate components that used to be run individually.<br>This project aims to ease the usage of Ra by integrating it into a complete de novo assembly tool.</p>
<p>Unlike other state-of-the-art assemblers,&nbsp;<span>Ra does not have an error correction step.</span>&nbsp;Instead, it relies on detecting overlaps using a very sensitive and specific overlapper ("graphmap -w owler",&nbsp;<a href="https://github.com/isovic/graphmap">https://github.com/isovic/graphmap</a>) and constructing and reducing an overlap graph (Ra layout,&nbsp;<a href="https://github.com/mariokostelac/ra">https://github.com/mariokostelac/ra</a>).</p><p>Address of the bookmark: <a href="https://github.com/mariokostelac/ra-integrate/" rel="nofollow">https://github.com/mariokostelac/ra-integrate/</a></p>]]></description>
	<dc:creator>biogeek</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29262/bioinformatics-jobs-at-chittaranjan-national-cancer-institute</guid>
  <pubDate>Thu, 29 Sep 2016 09:36:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics jobs at Chittaranjan National Cancer Institute]]></title>
  <description><![CDATA[
<p>Chittaranjan National Cancer Institute Advertisement No.497/2016 Invites Applications For Senior Scientific Officer, Gr. II </p>

<p>Note: Experience in the following field required: Molecular cancer cytogenetic and genetic toxicology Molecular drug Designing and targeted therapy Cancer genomics, proteomics, bioinformatics and next generation sequencing Therapeutic stem cell research and gene therapy Molecular cancer immunology and immunotherapy Molecular epidemiology Tumor endocrinology Translation research Ultra structural/tissue engg/development biology research Virus and cancer Molecular pathology No. of Posts: 11 (Eleven), (SC-1, OBC-3, UR-7) </p>

<p>Location: Kolkata (Calcutta) Salary: Rs.15600-39100 + Grade, Pay Rs.5400/- </p>

<p>For details kindly refer to the Employment News dated 24-30 September, 2016 and in the Institute’s Website: http://www.cnci.org.in </p>

<p>Last date for receipt of applications is 30 days from the date of notification in the Employment News. Director Chittaranjan National Cancer Institute 378, S.P. </p>

<p>Institute’s Website: http://www.cnci.org.in</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36985/swalo-scaffolding-with-assembly-likelihood-optimization</guid>
	<pubDate>Wed, 20 Jun 2018 02:45:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36985/swalo-scaffolding-with-assembly-likelihood-optimization</link>
	<title><![CDATA[SWALO: Scaffolding with assembly likelihood optimization]]></title>
	<description><![CDATA[SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing.

Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.<p>Address of the bookmark: <a href="https://atifrahman.github.io/SWALO/" rel="nofollow">https://atifrahman.github.io/SWALO/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38212/megahit-an-ultra-fast-single-node-solution-for-large-and-complex-metagenomics-assembly-via-succinct-de-bruijn-graph</guid>
	<pubDate>Wed, 14 Nov 2018 04:50:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38212/megahit-an-ultra-fast-single-node-solution-for-large-and-complex-metagenomics-assembly-via-succinct-de-bruijn-graph</link>
	<title><![CDATA[MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph]]></title>
	<description><![CDATA[<p><span>MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct&nbsp;</span><em>de Bruijn</em><span>&nbsp;graph (SdBG) to achieve low memory assembly. MEGAHIT can&nbsp;</span><span>optionally</span><span>&nbsp;utilize a CUDA-enabled GPU to accelerate its SdBG contstruction. The GPU-accelerated version of MEGAHIT has been tested on NVIDIA GTX680 (4G memory) and Tesla K40c (12G memory) with CUDA 5.5, 6.0 and 6.5. MEGAHIT v1.0 or greater also supports IBM Power PC and has been tested on IBM POWER8.</span></p>
<p><span>https://academic.oup.com/bioinformatics/article/31/10/1674/177884</span></p><p>Address of the bookmark: <a href="https://github.com/voutcn/megahit" rel="nofollow">https://github.com/voutcn/megahit</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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