<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/26309?offset=1600 https://bioinformaticsonline.com/file/view/4220/cv-of-dr-pranjal-chandra Wed, 04 Sep 2013 11:15:25 -0500 https://bioinformaticsonline.com/file/view/4220/cv-of-dr-pranjal-chandra <![CDATA[CV of Dr. Pranjal Chandra]]> Pranjal Chandra PhD https://bioinformaticsonline.com/file/view/14868/bioinformaticians-summer-vacation Wed, 03 Sep 2014 13:11:50 -0500 https://bioinformaticsonline.com/file/view/14868/bioinformaticians-summer-vacation <![CDATA[Bioinformatician's summer vacation !!!]]> Yes, the bioinformatician do spend their summer vacation like this. They spend more time on cheking the JOBS running on various servers.

]]> Jit https://bioinformaticsonline.com/opportunity/view/36647/bioinformatics-jobs-at-nibmg Wed, 16 May 2018 02:57:15 -0500 <![CDATA[Bioinformatics jobs at NIBMG]]> NIBMG are looking for bright and motivated people in our big projects on cutting edge biomedical genomics research

http://www.nibmg.ac.in/academic/SyMeC-ICGC/SyMeC%20&%20ICGC_May%202018.pdf

http://www.nibmg.ac.in/academic/plp/15_05_2018/AdvertisementMay2018.pdf

]]> https://bioinformaticsonline.com/bookmarks/view/41689/medaka-sequence-correction-provided-by-ont-research Mon, 18 May 2020 16:28:00 -0500 https://bioinformaticsonline.com/bookmarks/view/41689/medaka-sequence-correction-provided-by-ont-research <![CDATA[medaka: Sequence correction provided by ONT Research]]> medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods, whilst being much faster.

Address of the bookmark: https://github.com/nanoporetech/medaka

]]> BioStar https://bioinformaticsonline.com/opportunity/view/45140/integration-of-speciation-research-workshop-announcement Tue, 28 Apr 2026 07:07:57 -0500 <![CDATA[Integration Of Speciation Research : Workshop Announcement]]> We are excited to share that the ESEB- funded special topic network Integration Of Speciation Research (IOS - https://speciation-network.pages.ist.ac.at/) is hosting a second in-person workshop from 7–11 December 2026 at the Scottish Centre for Ecology & the Natural Environment (Glasgow, UK - https://www.gla.ac.uk/research/az/scene/).

This workshop is aimed at bringing together ~40 diverse speciation researchers:

- to collaborate on populating a database of published reproductive barriers based on a standardized RIO framework (https://ecoevorxiv.org/repository/view/10083/). This will involve working through papers during the workshop to extract RI measures and other metadata and entering them into a draft database (some preparatory work before the workshop may be requested to facilitate these steps during the workshop)

- to start working towards a manuscript using this database to answer an outstanding question in speciation

- to network, learn about reproductive isolation, and have fun!

If you are interested in applying to participate in the workshop, please fill out the form in the link below by ** May 20th **. Room & board will be covered by the organizers; all other travel costs are the responsibility of the attendee.

Application link:

https://docs.google.com/forms/d/e/1FAIpQLSenAMqSdZjeRmKEDtBNa5tpjPn7IukPyT5BzfZ4JMpIk2YOEw/viewform

The previous IOS workshop was held in Finland in 2023 (see more details at https://speciation-network.pages.ist.ac.at/workshops) and resulted in new interactions between speciation researchers and the successful publication of an Integration of Speciation research manuscript (https://academic.oup.com/evolinnean/article/3/1/kzae001/7609448).

We look forward to seeing you in Glasgow!

]]> https://bioinformaticsonline.com/news/view/42023/encode3-a-collection-of-research-articles-and-related-content-describing-the-encyclopedia-of-dna-elements-its-datasets-and-tools Sat, 08 Aug 2020 08:25:21 -0500 https://bioinformaticsonline.com/news/view/42023/encode3-a-collection-of-research-articles-and-related-content-describing-the-encyclopedia-of-dna-elements-its-datasets-and-tools <![CDATA[ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.]]> How cells, tissues and organisms interpret the information encoded in the genome has vital implications for our understanding of development, health and disease. Launched in 2003, the ENCyclopedia Of DNA Elements (ENCODE) project has the aim of mapping the functional elements in the human genome (later expanded to include model organisms).

During the first phase of ENCODE, published in 2007, microarray-based technologies were used to detect regions associated with transcription factors, certain histone modifications and open chromatin within a pre-specified 1% of the human genome.

ENCODE’s second phase saw a switch to sequencing-based technologies, the addition of new assay types and the analysis of functional elements genome-wide, described in a collection of research articles in 2012.

The Encyclopedia paper of ENCODE 3, published in Nature, gives an overview of the various assays that were performed in human and mouse cell lines and tissues and describes a Registry of human and mouse candidate cis-regulatory elements (cCREs).

More at https://www.nature.com/immersive/d42859-020-00027-2/index.html

]]> Shruti Paniwala https://bioinformaticsonline.com/researchlabs/view/22393/narcis-fernandez-fuentes-lab Mon, 25 May 2015 07:30:00 -0500 <![CDATA[Narcis Fernandez-Fuentes Lab]]> Welcome to our web-site compiling all the research-related activities of the group. Our research interests relate to a number of areas within Bioinformatics. We have a long-standing interest in protein structure prediction and structure-to-function relationships. We work in the study of biomolecular interactions, modeling of protein complexes, the study and characterization of protein-protein interactions, peptide design, modeling of genetic variation, structure-based protein design and different aspects of Plant Bioinformatics. Take a look at the our databases and servers and the list of publications for more information.

More at http://www.bioinsilico.org/

]]> https://bioinformaticsonline.com/opportunity/view/25323/project-fellow-positions-at-csir-ihbt-palampur Tue, 01 Dec 2015 05:45:58 -0600 <![CDATA[Project Fellow Positions at CSIR-IHBT Palampur]]> Walk-in-Interview is scheduled to be held on the date as mentioned below for selection of Suitable candidates in the following areas under the different Sponsored/CSIR Networked Projects on purely temporary basis for the duration of the project(s) or till completion of projects whichever is earlier:

Sponsored/CSIR Networked Project:
(i) Genomics and Informatics Solutions for Integrating Biology (GENESIS)" [BSC-0121] (up to March, 2017).
(ii) Profiling and characterization of early phase differential mi-RNA (s) responsible for downstream developmen of insulin resistance in hMSC derived adipocytes. (GAP-0188) [up to 31.03.2018].

Position: Project Fellow (2 position)
Age : 28 years as on 18.12.15
Salary : Rs.12,000/- P.M.
Rs.14,000/- P.M.
as per the funds provisions in the respective projects.
Eligibility Criteria : 1st Class B. Tech. in Bioinformatics/ Computational Biology
OR
M.Sc. in Bioinformatics/ Computational Biology with 55% marks
OR
M.Tech. in Bioinformatics/ Computational Biology with 55% marks
OR
M.Sc. in any field of Life Science with Diploma in Bioinformatics

Selection Procedure : Walk In Interview

Date : 18 Dec , 2015
Time : 10:00 A.M.
Venue : CSIR-IHBT Palampur (H.P.)

]]> https://bioinformaticsonline.com/opportunity/view/25866/jrf-bioinformatics-at-national-chemical-laboratory Sun, 03 Jan 2016 05:59:05 -0600 <![CDATA[JRF Bioinformatics at National Chemical Laboratory]]> Junior Project Fellow Bioinformatics
Eligibility : ME/M.Tech, MSc(Bio-Informatics)
Location : Pune
Last Date : 08 Jan 2016
Hiring Process : Written-test, Face to Face Interview
National Chemical Laboratory

Junior Project Fellow Jobs opportunity in National Chemical Laboratory on contract basis
Project Code : BSC0117
Title of the Project : Plant?Microbe and Soil Interactions (PMSI)
No. of Post : 01
Qualification : M.Tech. / M.Sc. in Bioinformatics from a recognized university with minimum of 55% marks (aggregate) and sound Bioinformatics knowledge / experience
Desirable : Good knowledge of Linux (command line and GUI) and SQL; Java / Perl / Python / R / Bash programing / scripting; Analysis of NGS data; Protein modeling / docking; Development and maintenance of web & database servers, etc
Emoluments : Rs. 16,000/?
Age Limit : 28 Years
Selection Procedure : Written Test / Interview
How to apply
Applications neatly typed in the prescribed proforma (enclosed herewith) duly completed and signed together with photo?copies of relevant certificates/ testimonials and photograph should be addressed to : The Head, Biochemical Sciences Division, Attn : Dr. Narendra Kadoo, CSIR?National Chemical Laboratory, Dr. Homi Bhabha Road, Pashan, Pune 411 008, so as to reach on or before 08/01/2016. Please superscribe the envelop “Application for Junior Project Fellow (Project: BSC0117)”.

More at http://www.ncl-india.org/files/JoinUs/JobVacancies/TemporaryJobs.aspx?

]]> https://bioinformaticsonline.com/researchlabs/view/25993/hoffman-lab Tue, 12 Jan 2016 02:47:41 -0600 <![CDATA[Hoffman Lab]]> They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological insight.

https://www.pmgenomics.ca/hoffmanlab/

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