Jit
Enthusiast computational biologist with business dream !!!
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ChromHMM: Chromatin state discovery and characterization
By Abhimanyu Singh 2776 days agocompbio.mit.edu - ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial...LRSDAY: Long-read Sequencing Data Analysis for Yeasts
By Poonam Mahapatra 1916 days agogithub.com - Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and great biotechnological importance, the budding...Mapping NGS
By Abhimanyu Singh 2762 days agowiki.bits.vib.be - NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it represents...To know that you have to align the sequences to the reference sequence. The reference sequence is in most cases...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1434 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
By Priya Singh 2755 days ago Comments (10)10 International Scholarships for Indian StudentsPhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
By LEGE 276 days agogithub.com - What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies, mitochondrial genome assemblies, nuclear ribosomal DNAs...CABOG: Celera Assembler with Best Overlap Graph
By Abhimanyu Singh 2750 days agowww.jcvi.org - CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as large genomes such as...
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
Last updated 2574 days ago by Abhimanyu Singh Comments (1)kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances...PhD positions in Genova at DIBRIS - Univ. of Genoa, Italy
PhD positions in Genova at DIBRIS - Univ. of Genoa (Italy) http://www.disi.unige.it/person/MasulliF/ricerca/PhDinGenova2017.html The call for some funded positions for the 3 years PhD studies at the Department of Informatics, Bioengineering,...Scripts for the analysis of HGT in genome sequence data.
By Jit 2551 days agogithub.com - Scripts for the analysis of HGT in genome sequence data
