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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26414?offset=330</link>
	<atom:link href="https://bioinformaticsonline.com/related/26414?offset=330" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21537/bioinformatics-project-fellow-at-institute-of-genomics-integrative-biology-new-delhi-delhi</guid>
  <pubDate>Wed, 11 Mar 2015 03:04:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Project Fellow at Institute of Genomics &amp; Integrative Biology  - New Delhi, Delhi]]></title>
  <description><![CDATA[
<p>Pay Scale: Rs. 16,000/- + 30 % HRA per month<br />Educational Requirements: M.Sc. in Bioinformatics with at least 55% marks Qualifications: Knowledge of Perl, R and other programming language or Database management or knowledge of pipelines to analyze NGS data or experience in scientific writing and good communication skills </p>

<p>Details will be available at: http://www.igib.res.in/sites/default/files/26032015.pdf </p>

<p>No of Post: 01, 01 </p>

<p>How To Apply: 1. Please fill up the proforma 2. Candidate cannot apply for more than two posts. Last date of receiving application is 12-03-2015. No application would be entertained with “result awaited” status or after due date. List of shortlisted candidates will be put up on CSIR-IGIB website. No TA/DA will be paid to the candidates to attend the interview. The engagement shall be as per guidelines of CSIR/Funding agency. Candidates will have an option to give reply in Hindi. Note: The shortlisted candidates, have to report at 09:00 AM at Mall Road Campus, Delhi – 110007 on the day of interview along with any Photo ID card, (without photo ID card interview will not be conducted). 3 copies of updated signed C. V. (clearly mentioning Date of Birth and Hightest Qualification with percentage), Dissertation (if any), PhD thesis (if any) and original certificates/Self attested photocopies for verification. </p>

<p>General Instructions: Engagement is for the project and on behalf of the funding agency and the tenure shall be as mentioned above. The duration of the post is initially for One year or till the closing date of the project, whichever is earlier. Tenure may be extendable up to project duration. Contract may be terminated at any time by giving one-month notice by either side. The applicants will have no claim implicit or explicit for consideration against any CSIR/IGIB post. Candidates should note that non-fulfillment of the eligibility criterion will result in cancellation of candidature at any stage. </p>

<p>Last Date: 12-03-2015. <br />Age Limit: 28 Years</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/36405/earth-biogenome-project</guid>
	<pubDate>Wed, 25 Apr 2018 07:48:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/36405/earth-biogenome-project</link>
	<title><![CDATA[Earth BioGenome Project]]></title>
	<description><![CDATA[<p><span>The central goal of the Earth BioGenome Project is to understand the evolution and organization of life on our planet by sequencing and functionally annotating the genomes of 1.5 million known species of eukaryotes, a massive group that includes plants, animals, fungi and other organisms whose cells have a nucleus that houses their chromosomal DNA. To date, the genomes of less than 0.2 percent of eukaryotic species have been sequenced.&nbsp;</span></p><p><span>More at&nbsp;https://www.ucdavis.edu/news/earth-biogenome-project-aims-sequence-dna-all-complex-life</span></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33617/list-of-universities-offering-bachelor-or-master-bioinformatics-degree-in-pakistan</guid>
	<pubDate>Wed, 21 Jun 2017 04:20:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33617/list-of-universities-offering-bachelor-or-master-bioinformatics-degree-in-pakistan</link>
	<title><![CDATA[List of universities offering Bachelor or Master bioinformatics degree in Pakistan]]></title>
	<description><![CDATA[<p>There are a lot of universities offering Bachelor or Master degree in Pakistan. Following are the list of few intitute/universities</p><p>Bachelor/ BS Bioinformatics at<br />1. Al-khair University, Bhimber<br />2. Government College University, Faisalabad<br />3. University Of Agriculture, Faisalabad<br />4. Comsats Institute Of Information Technology [isb], Islamabad<br />5. International Islamic University, Islamabad<br />6. Quaid-e-azam University, Islamabad<br />7. Khushal Khan Khattak University, Karak<br />8. Virtual University Of Pakistan, Lahore<br />9. Virtual University Of Pakistan, Lahore<br />10. Hazara University, Mansehra<br />11. Shaheed Benazir Bhutto Women University, Peshawar<br />12. Comsats Institute Of Information Technology, Sahiwal<br />13. Capital University Of Science And Technology, Islamabad<br />14. Foundation University, Islamabad<br />15. Baqai Medical University/hospital, Karachi<br />16. Institute Of Business And Technology(main Campus), Karachi<br />17. Sir Syed University Of Engineering &amp; Technology, Karachi<br />18. Forman Christian College, Lahore<br />19. Qarshi University (lhr), Lahore<br />20. The Superior University, Lahore<br />21. University Of Management And Technology, Lahore<br />22. Federal Institute Of Health Sciences, Lahore<br />23. Shaheed Benazir Bhutto Women University Peshawar, Sub Campus, Swabi<br />24. Government Postgraduate College ( Mandian), Abbottabad<br />25. Federal Institute Of Health Sciences, Multan<br />26. Fedral Institute Of Health Sciences, Muzaffarabad<br />27. The Limit Institution Of Health Sciences, Sahiwal</p><p><br />Master/ MS Bioinformatics cources at<br />1. Government College University, Faisalabad<br />2. Comsats Institute Of Information Technology [isb], Islamabad<br />3. International Islamic University, Islamabad<br />4. National University Of Science &amp; Technology, Islamabad<br />5. Quaid-e-azam University, Islamabad<br />6. University Of Sindh, Jamshoro<br />7. Virtual University Of Pakistan, Lahore<br />8. Hazara University, Mansehra<br />9. Shaheed Benazir Bhutto Women University, Peshawar<br />10. Capital University Of Science And Technology, Islamabad<br />11. Cecos University Of Information Tech. &amp; Emerging Sciences, Peshawar</p><p>The real bioinformatics scope lies if there are research labs which work in this field. One has to take account of that. If so then try to get information of those labs and visit them to get a hang of the work they pursue.</p><p>There is a huge buzz of precision medicine in light of genomics all around the world. One should also try to see how genomics infrastructure is built up or standing in Pakistan. If research labs having collaboration with hospitals employ genomics then one must also visit such labs. This will bring new avenues in healthcare advances. Not only it opens up the wealth of knowledge one can make out of genomics study but will also advance the critical thinking of therapies.</p><p>So I would encourage to target research labs working in the fields and also get information of hospitals employing genomics, this will give you an overall understanding of the fields demand in your country.</p>]]></description>
	<dc:creator>Reshma Khatun</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23537/research-associate-bioinformatics-central-institute-for-research-on-buffaloes-cirb-hisar-haryana</guid>
  <pubDate>Fri, 31 Jul 2015 10:19:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics Central Institute for Research on Buffaloes (CIRB) - Hisar, Haryana]]></title>
  <description><![CDATA[
<p>Research Associate (RA) under Network Project on Agricultural Bioinformatics</p>

<p>Name of the Project : Network Project on Agricultural Bioinformatics Number of positions One<br />Qualifications : Ph.D Degree in Bioinformatics/Biotechnology/ Biochemistry/Genetics &amp; Breeding/Life Sciences OR Master’s Degree in relevant subject with at least 2 years research experience. Desirable : Working experience in Molecular Biology/Genomics/Bioinformatics, specifically, sequence data analysis using software’s proficiently</p>

<p>Emoluments : Masters Degree Holders Rs. 38,000/- per month Doctoral Degree Holders Rs. 40,000/- per month</p>

<p>Emoluments : Rs.25000/- per month for 1st and 2nd year and Rs. 28000/- per month for 3rd year<br />Age Limit : Upper age limit is 35 years for men and 40 years for women on the date of interview. Age relaxation for SC/ST and OBC candidates as per rules</p>

<p>More at http://www.cirb.res.in/attachments/195_walk-in-interview%20for%20contractual%20positions%20of%20RA%20and%20SRF%20%28On%20Dated%2011.8.2015%29.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36950/salsa-a-tool-to-scaffold-long-read-assemblies-with-hi-c</guid>
	<pubDate>Fri, 15 Jun 2018 04:01:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36950/salsa-a-tool-to-scaffold-long-read-assemblies-with-hi-c</link>
	<title><![CDATA[SALSA: A tool to scaffold long read assemblies with Hi-C]]></title>
	<description><![CDATA[This code is used to scaffold your assemblies using Hi-C data. This version implements some improvements in the original SALSA algorithm. If you want to use the old version, it can be found in the old_salsa branch.

To use the latest version, first run the following commands:

  cd SALSA
  make
To run the code, you will need Python 2.7, BOOST libraries and Networkx(version lower than 1.2).

If you consider using this tool, please cite our publication which describes the methods used for scaffolding.

Ghurye, J., Pop, M., Koren, S., Bickhart, D., &amp; Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. Link

Ghurye, J., Rhie, A., Walenz, B.P., Schmitt, A., Selvaraj, S., Pop, M., Phillippy, A.M. and Koren, S., 2018. Integrating Hi-C links with assembly graphs for chromosome-scale assembly. bioRxiv, p.261149 Link

For any queries, please either ask on github issue page or send an email to Jay Ghurye (jayg@cs.umd.edu).<p>Address of the bookmark: <a href="https://github.com/machinegun/SALSA" rel="nofollow">https://github.com/machinegun/SALSA</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21022/ra-bioinformatics-at-tezpur-university</guid>
  <pubDate>Fri, 06 Feb 2015 04:11:23 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at TEZPUR UNIVERSITY]]></title>
  <description><![CDATA[
<p>Walk-in-interview will be held on 23 February, 2015 at 11.00 a.m. for the following temporary positions in the DBT (U-EXCEL) sponsored project entitled “Sequencing genomes of some bacteria that invade/resides in tomato plant” under the Principal Investigator Dr. Suvendra Kumar Ray, Department of Molecular Biology and Biotechnology, Tezpur University.</p>

<p>Interested candidates may appear before the interview board on 23 February, 2015 at the Office of the Head, Department of Molecular Biology &amp; Biotechnology, Tezpur University with original documents and photocopies of marks sheets, certificates, testimonials, caste certificate (if applicable), experience certificate and a copy of curriculum vitae (CV) duly signed by the candidate.</p>

<p>Position: One (01) Research Associate.</p>

<p>Educational Qualification: Candidates having Ph.D. degree or submitted thesis in any topic of Life Science Areas (Zoology, Botany, Microbiology, Biotechnology etc.) along with knowledge of gene and protein sequence analysis may apply.</p>

<p>Remuneration: Rs. 22,000/- (Rupees twenty two thousand) only + 10% HRA as admissible per month for the first year and Rs. 23,000/- (Rupees twenty three thousand) only + 10% HRA as admissible per month for the second year.</p>

<p>Age: Candidate preferably below the age of 40 years who have obtained a doctorate (Ph.D.) degree from a recognized University.</p>

<p>Upper age limit may be relaxed up to 5 years in the case of candidates belonging SC/ST/OBC/Women and physically challenged.</p>

<p>Position: One (01) Project Assistant.</p>

<p>Educational Qualification: B.Sc./B.Tech./B.E./B.Pharma in any branch with minimum 55% mark in the qualifying examinations and minimum 50 % mark in 10th and 10+2 Science examinations.</p>

<p>Remuneration: Rs. 8,000/- (Rupees eight thousand) only per month (consolidated). Age: Candidate should not be more than 28 years of age on the date of interview. Upper age limit may be relaxed up to 5 years in the case of candidate belonging to SC/ST/OBC/Women/Physically Challenged.</p>

<p>Duration: One year or till completion of the project, whichever is earlier. N.B. No TA/DA will be paid to the candidates for attending the interview.</p>

<p>For further information contact – Dr. Suvendra Kumar Ray, Associate Professor Email: suven@tezu.ernet.in Department of Molecular Biology and Biotechnology Tezpur University Sd/- Dean, Research &amp; Development Tezpur University</p>

<p>Advertisement: http://www.tezu.ernet.in/ProjectWalkin/Advt-SKR2-5342-A.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/37905/phased-human-genome-assembly</guid>
	<pubDate>Mon, 08 Oct 2018 09:10:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/37905/phased-human-genome-assembly</link>
	<title><![CDATA[Phased Human Genome Assembly !]]></title>
	<description><![CDATA[<p>The new publicly available assembly (PacBio&nbsp;<a href="https://www.globenewswire.com/Tracker?data=IM2cKfZgtHafORdb9VSstujBjyW-aIzFILCtXNAkcY_yqVmxdjvG01R_FZQC7zLxs-alqquXwsW6MG98G9-g-ym8Nue2pmUZMtkIg3FIat2mYbJ-z2Ra367GlinbO13x" target="_blank" title=""><span style="text-decoration: underline;">HG00733</span></a>) has the fewest gaps of any human genome assembly, with more than half of the genome contained in gapless sequence at least 27 Mb long. The primary contig assembly is 2.89 Gb long and consists of 865 contigs that were assembled with PacBio data generated with the company&rsquo;s Sequel<span>&reg;</span>&nbsp;System. Using the&nbsp;<a href="https://www.globenewswire.com/Tracker?data=jOa6mE1Y5r8VbU1CaCgx1A0HsoVzJ7waxOiDKgvmKL6cwJq_eH4nWrGj2vLkNpxHl1-5CH4htDB4113PXT8WU60hvHQ-KKpvAwQwveEGvz3N4d0q7QHSa_X97LW8_9xEiYqfsc4d24ca-IpVYZsf7Ue-XL7fSIIZw_EHK-F96t1aaQNRcD-z1PP5qvlZbVwX" target="_blank" title=""><span style="text-decoration: underline;">FALCON-Unzip assembler</span></a>, maternal and paternal haplotypes were resolved over more than 80% of the genome. Maternal and paternal haplotype blocks were then further phased using Hi-C technology and the&nbsp;<a href="https://www.globenewswire.com/Tracker?data=jOa6mE1Y5r8VbU1CaCgx1IrQmRcKvNQm83FLTqQE6OGzutM-fEggnm4Z-nsniK0D_YmDKS_UKWE0NHtHbgvbL973Y2-9NhrWhYKizXQ4lpiTvlqPf1UZdjqVs7BDjISgDnovv8foYw8es8jQzAg5Xfq1CH36NOnWQgA_X04XSvyEEEj0q801Im6cV5M5K4eL15vb_ZgUayccOvDY_fc6lxxPAAAyA4h16-zUN44Y81KdujciCrJrv5xynMIXEjRsaIKCf6eCX_Q1j_uZlN5TD0MVr6HulTYG8lGgyL0x-eQ=" target="_blank" title=""><span style="text-decoration: underline;">FALCON-Phase method</span></a>developed in collaboration with Phase Genomics. The genome was then&nbsp;<em>de novo</em>&nbsp;scaffolded using Phase Genomics&rsquo;&nbsp;<a href="https://www.globenewswire.com/Tracker?data=4wcqEWHJpCHRJARQkC0oVkYT9htT14iVebujxcW1nMpAjmigHGQ46ObCGetRfyaZm1ADIHaV1-30B9izTAhjJ-efhFlxorUxs08kdV-9AAzQyuHJ9S7wxnRRnyegsTZd" target="_blank" title=""><span style="text-decoration: underline;">Proximo Hi-C platform</span></a>, resulting in the first chromosome-scale diploid assembly of a single individual accomplished with only two technologies. More specific details about the assembly are included on the PacBio blog.</p><p>The data are available using NCBI accession IDs: BioProject: (<a href="https://www.globenewswire.com/Tracker?data=YZtCuhY2wu5H0yIso9jtUufPXbwyHh1QOZ1jBggGpK5NtXaU_JGC9X39F3uHZ96uVmu6hW5OB2Qq805hUEW2OhSNCm630yFiEF6_nsAwYB0=" target="_blank" title=""><span style="text-decoration: underline;">PRJNA483067</span></a>), assembly: [<a href="https://www.globenewswire.com/Tracker?data=CEXZ7E56JOsRgfH4Wq3r5LVbv4QH_UIekV9idYBys9l8K7pFft824jmYWNzJqK7lQ9fMbaAtbURpm8gM7zqUbpPUrydFwrkJGGtG-NBHctjyjddiFY-p06xZPm2mHXE2" target="_blank" title=""><span style="text-decoration: underline;">RBJD00000000</span></a>] and sequence data (<a href="https://www.globenewswire.com/Tracker?data=pELP2RpqTqTRaPF9yN1N7GZYlQmTxpY0aW-B8xaNw6iyD-Lylw7X3UzMDK3YS4AIYgLtD13em2XsbzOwKhXuNbI4Ks6-LSyXl1_yVdFoB0U=" target="_blank" title=""><span style="text-decoration: underline;">SRP155659</span></a>).</p><p><span>Additional Resources</span></p><ul>
<li><a href="http://globenewswire.com/Tracker?data=zXpdadphSgIAIEWeq46yRPm5-TU0H7wTkL48ue4I9GsaHd5mJyMb9PgXgAsElREkLOCOdWdJ8uW9DHB-LyQ7xhzbd97Qis6CuAlqD0ubGgY%3D" target="_blank" title=""><span style="text-decoration: underline;">Interactive map</span></a>&nbsp;showcasing global initiatives underway to generate reference-quality human genome assemblies for diverse populations</li>
<li><a href="http://globenewswire.com/Tracker?data=EQ8NIaaa8k1Nw1MPRJYIHYrqgsDy92kU8W0siJdGQhq5IJ0dcb890PFFm-C1SrAlFf0xkxUVRxZefFK5ebhoIzmS-6OjR1G9sTxOkCOwRHCAZWmHL-e7uGSuZYcw1VsDp8AeDWO0RwcepMMB6hAoR6BBCJDiJVVZtdFlWBn2uxs%3D" target="_blank" title=""><span style="text-decoration: underline;">BioReport Podcast</span></a>&nbsp;on the value of ethnic-specific reference genomes</li>
<li><em>Nature Reviews Genetics</em>&nbsp;paper from NHGRI:&nbsp;<a href="http://globenewswire.com/Tracker?data=dffu-wPD_JX1_KVeCA6VFy-kP1tlAUbn7d85saXD59dnnJfT2BE3N_Rbm6kT4BvifA_XEs49ioa75cy4HyFi90RA_LRa2QFF6Y4mr-dcoMucljZw0K4JNDZuwWkWPE51cVC2Lqq3E3C1aZ8un6Bq3i-OO_NiVH0hh23hUw4wC84%3D" target="_blank" title=""><span style="text-decoration: underline;">Prioritizing&nbsp;diversity&nbsp;in human genomics research</span></a></li>
<li>Article in&nbsp;<em>The Journal of Precision Medicine</em>: &ldquo;<a href="http://globenewswire.com/Tracker?data=yokLqO2TCBLCdj6uZl-GYbqcGMWBerBYjSPrLMumNrWF2p5XlXq9yl5p-1b5xx3Ckfn5ZjQWkdhxLttbiNae5gccUCP-9RWPUqvTu9MuU9zgJ1c8e14lAladCuEOiVZ2oVRiqssPtLu9hgQWw4ad5EUxZemevsHE4BHC6IiFmMZ6DS6ApwZu-IonFgCFBIcjWOpitQthDASosfaqkMi9LsKgLU9F0WGVJDDOzHXpddhjfCUdEEJ7xC1p8uh9TSiCZgZV6XPlUJSe8n0C_9TtOw%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Minority Report &ndash; Ethnic Diversity and the Real Promise for Precision Medicine</span></a>&rdquo;</li>
<li>Article&nbsp;in&nbsp;<em>Bio-IT World</em>: &ldquo;<a href="http://globenewswire.com/Tracker?data=rLp1pKetctTPitNEnRjOVDZ3Cvw3FUdL6_ybXncvhjR4ksOrX3y6HUK8WtLlKHT7XZzq_woUjZ-uw20YNvsP0GZAmy5lVqETt27oBLi02wFtTH_6ubELIHtBu8vfVyKnqKp-YhosFG5K7y0RUtzmNjOAlCYPAeVXabn2a2AiSePxUXA_tSy_g79hjYm63x9dPN9oFQGYedOsyHD_ls8DKw%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Genomic Data Standards Are a Necessity</span></a>&rdquo;</li>
<li>NHGRI Project Award:&nbsp;<a href="http://globenewswire.com/Tracker?data=FbqTEeRffJ88lFryYX6MiOefXvIXFdZDAyW4nrFoYNHaJyMEYIcb7I4BIcEQmxzsKOjrlf9F8irfRJeJLOqG8KFsl-kvkhakUkg3BfYdKGnpLzKYyWbUFR0aKMeEXirHBi7oDLEUSDO45qxANwxyee-pqZXfzAIwF1Wcuaf7EIzNqRqmBUJ3TyNyI05lwAo9gDKmApMnJo5VxPj5P_6rY8lisuv1PNSAh_kJPOuhVBk%3D" target="_blank" title=""><span style="text-decoration: underline;">High Quality Human and Non-Human Primate Genome Assemblies</span></a></li>
</ul><p>More details are available on the PacBio website:</p><ul>
<li>Blog post:&nbsp;<a href="http://globenewswire.com/Tracker?data=ycj-ujgsKzVyljNa11buVmIS5tk9B733VsFZEw77nBXo-IkBvcoG16dN9vuTiY3nm2G5dJZS5Iva3w_znrEtJVDuU8cVlFpozY2ibinKwrMGxkXZVSqW8_uD8fbySRjM5Q_cjuPU22ARFSSLCc9vHJx9WHnb9Rza-qPbuWgewa0rWWStq2fQY5mLpeaQf5fcDJnyQkvDAMI3fauXdzyThg%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Data Release: Highest-Quality, Most Contiguous Individual Human Genome Assembly to Date</span></a></li>
<li>Blog post:&nbsp;<a href="http://globenewswire.com/Tracker?data=GlZZ9nyp5mDSjJPPfhVD1-dZ_W2l8s0eAUox3TQs949zyGjzO7dx9xodyvyqerdqPC-G3ZhdPEs9xNhJwflrwgHPYQL3kTofprKHBBq3O4gn9E75YUBweJw9b6tTE89sMLUQzF-vRNNDjero3mibm_uG-fSHoYBTm2ZlyEmwzZ5E9tXVd5_RjG0Xnej2E0scA0SncEItAF6Q7vdOydTV_Yr9yYT2TmKY5jtyAt6ZrNGn3McqfV9mMRkR-8dYJLqrQln9JiEkWTwUae6Blj56HyjyXKl6Dfa_CyNuy4r-EWU%3D" target="_blank" title=""><span style="text-decoration: underline;">For Reference-Grade Human Genome Assemblies, SMRT Sequencing Yields Optimal Results</span></a></li>
<li>Webinar: &nbsp;<a href="http://globenewswire.com/Tracker?data=xlnfDwMNLGZZvtexJYsUgMe-DV8HNrYx2QqjwIjfj40dToVtqrBi-gvhknHZmIe8GV_3WU3_9LIlP6GzG3ZoajnDIpwECzdMV5Vyy8Ast4Y2AiHJckf7rBhZVEU4_mV4JB0k3I9XjN2jHK8Cp5uBxyIWWqPdI6qBBdCYYhYLXUTkKpaZEV98oCfC5ET2Q7OSwUM7NieKa75yzMHwaPEYwg%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Assembling High-Quality Human Reference Genomes for Global Populations</span></a></li>
<li>FALCON-Phase&nbsp;<a href="http://globenewswire.com/Tracker?data=4Z9LDdRq3w2zYFQXEFGmz6u-Vrbfh96syfzrQMKhegLRo2PUvk7s3Xz_y1o--NuTLoCQMrHsqOEBUHIL1IPeOmhyf6Eqwdp8dv8xYo9gSVI%3D" target="_blank" title=""><span style="text-decoration: underline;">press release</span></a>&nbsp;and article&nbsp;<a href="http://globenewswire.com/Tracker?data=4Z9LDdRq3w2zYFQXEFGmz9Ts_IJqHWWrKd33x_ldJEU9mSKXpcVTTi9ioY0kVqrbrXHeCKDf4TdPnAoPJaGBK3YeZtYp-nXZacgyPESZ1XboSUZEJ9rIhDyW7bTLL5HN" target="_blank" title=""><span style="text-decoration: underline;">preprint</span></a></li>
<li>PacBio research focus webpage about&nbsp;<a href="http://globenewswire.com/Tracker?data=E-zzUkw4N01KR4muPun47qg4HX8ToDvLS4sX953hLM2wRyQZ2upkLR4WidyXTFDRLWQORpqxnkbD-CNzsOJyIfH8mJPbrLwRf04J4yjuNdem-Fulc8QIT3OCi4wx5LpqgC2ymLE0rYX5UOpbFPBgvA%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Human Population Genetics</span></a></li>
</ul><p>&nbsp;Ref:&nbsp;https://stockguru.com/2018/10/08/pacific-biosciences-releases-highest-quality-most-contiguous-individual-human-genome-assembly-to-date/</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21095/ra-walk-in-interview-actrec</guid>
  <pubDate>Mon, 09 Feb 2015 01:06:16 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA WALK-IN-INTERVIEW @ ACTREC]]></title>
  <description><![CDATA[
<p>No. ACTREC/Advt./ 7 /2015</p>

<p>Title of the Project<br />Research Associate<br />(One position)<br />DBTs Biotechnology/Bioinformatics training centre<br />PI Dr. Ashok Varma	</p>

<p>Duration of the Project Six Months from the date of appointment, can be extended further for six month.</p>

<p>Date &amp; Time: 17th February, 2015 at 10.00 a.m.</p>

<p>Venue: Meeting Room, 3rd floor, Khanolkar Shodhika, ACTREC</p>

<p>Essential Qualifications and Experience:</p>

<p>Ph.D. Degree in Basic Sciences from recognized University. Research experience in Bioinformatics or on gene cloning, protein purification, and crystallization.</p>

<p>*M.Sc. degree obtained after a one year course will not be considered.</p>

<p>Selected candidate will have to join at the earliest.</p>

<p>Consolidated Salary: Rs.28,600/- p.m. {Rs.22,000/- + 30% HRA}</p>

<p>The work progress of the candidate will be monitored and extension after 6 months will depend on satisfactory progress of the work.</p>

<p>Candidates fulfilling these requirements should pre-register by sending their application in the prescribed format with recent CV and contact details of 2 referees by e-mail to ‘program.office@actrec.gov.in’ latest by 17.00 hrs on 12-02-2015.<br />The interviews would be held on 17th February, 2015 and will be only for the pre-registered candidates. Candidates should report between 09.30 to 10.00 a.m. in Steno Pool, 3rd floor, Khanolkar Shodhika, ACTREC, Kharghar, Navi Mumbai.<br />No T.A./D.A. will be admissible for attending the interview.</p>

<p>At the time of Interview the candidate should bring original certificates along with CV with contact details of 2 referees and submit the photocopies (attested) of the certificates, with a recent passport size photograph.</p>

<p>All correspondence should be strictly made only to ‘program.office@actrec.gov.in’ as indicated.</p>

<p>Advertisement: www.actrec.gov.in/data%20files/2015/AV-RA-DBT-28-1-15.docx</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38063/referee-genome-assembly-quality-scores</guid>
	<pubDate>Sun, 04 Nov 2018 16:44:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38063/referee-genome-assembly-quality-scores</link>
	<title><![CDATA[Referee: Genome assembly quality scores]]></title>
	<description><![CDATA[<p>Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site in an assembled genome to calculate a quality score for each position in the genome assembly.</p>
<p>We accomplish this by first calculating genotype likelihoods for every site. For a given site in a diploid genome, there are 10 possible genotypes (AA, AC, AG, AT, CC, CG, CT, GG, GT, TT). Referee takes as input the genotype likelihoods calculated for all 10 genotypes given the called reference base at each position.</p>
<h3>Referee is a program to calculate a quality score for every position in a genome assembly. This allows for easy filtering of low quality sites for any downstream analysis.</h3>
<p>https://github.com/gwct/referee</p><p>Address of the bookmark: <a href="https://gwct.github.io/referee/#" rel="nofollow">https://gwct.github.io/referee/#</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21242/summer-intern-research-bioinformatics</guid>
  <pubDate>Mon, 16 Feb 2015 12:26:32 -0600</pubDate>
  <link></link>
  <title><![CDATA[Summer Intern - Research Bioinformatics]]></title>
  <description><![CDATA[
<p>Be proficient in LINUX, know perl or python, understand biology and Next Generation Sequencing.<br />The intern will port Agile Assay Design pipelines into Galaxy.<br />The intern will also learn to develope his/her own bioinformatics pipelines for PCR or NGS data analysis.</p>

<p>Who you are<br />You’re someone who wants to influence your own development. You’re looking for a company where you have the opportunity to pursue your interests across functions and geographies. Where a job title is not considered the final definition of who you are, but the starting point.</p>

<p>Qualifications:<br />Major: Bioinformatcis or biology major who is interested and wants to learn Biocomputing, At least 2 years of college.<br />Basic knowledge of LINUX and programming, e.g., perl, python, XML.</p>

<p>More at http://www.roche.com/careers/jobs/jobsearch/job.htm?id=E-00437679&amp;locale=en&amp;title=Summer%20Intern%20-%20Research%20Bioinformatics</p>
]]></description>
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