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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26424?offset=1090</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/2042/ngs-course-medical-genomics-scheduled-for-17-20-september-2013-in-uz-leuven-belgium</guid>
	<pubDate>Mon, 12 Aug 2013 12:08:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/2042/ngs-course-medical-genomics-scheduled-for-17-20-september-2013-in-uz-leuven-belgium</link>
	<title><![CDATA[NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).]]></title>
	<description><![CDATA[<p>This course is open to all students and postdocs and registration for all academic participants is free of charge. To help us in organizing the course, please register online via http://gc.uzleuven.be where the preliminary program is also available.</p><p>This course is organized with support from the IAP &ldquo;Belgian Medical Genomics Initiative&rdquo;, SymBioSys and the Genomics Core.</p><p>For inquiries, please email Ms Narcisse Opdekamp ( narcisse.opdekamp@uzleuven.be ).</p><p>More at &gt;&gt;&nbsp;<a href="http://gc.uzleuven.be/">http://gc.uzleuven.be/</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32726/ergo-20-bioinformatics-suites</guid>
	<pubDate>Tue, 16 May 2017 08:14:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32726/ergo-20-bioinformatics-suites</link>
	<title><![CDATA[ERGO 2.0 Bioinformatics suites]]></title>
	<description><![CDATA[<p>ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. &nbsp;Using Igenbio's proprietary algorithms, and the most comprehensive genomic database integrated with the largest collection of microbial metabolic and non-metabolic pathways, ERGO&trade; assigns functions to genes, integrates genes into pathways, and identifies previously unknown or mischaracterized genes, cryptic pathways, and gene products.&nbsp;</p><p>Address of the bookmark: <a href="https://www.igenbio.com/ergo/" rel="nofollow">https://www.igenbio.com/ergo/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1332/bioinformatics-companies-in-india</guid>
	<pubDate>Mon, 05 Aug 2013 20:20:07 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1332/bioinformatics-companies-in-india</link>
	<title><![CDATA[Bioinformatics Companies in India]]></title>
	<description><![CDATA[<p>Following are the list of top 30 bioinformatics companies in India. The companies name order does not follow any specific pattern.</p><p>1. Accelrys Software Solution Pvt Ltd.<br />12th Floor, Discover, ITPL, White Field, Bangalore-65.<br /><a href="http://www.accelrys.com/">www.accelrys.com</a></p><p>2. Apticraft Systems (P) Ltd.<br />142, Electronics Complex, Pardeshipura, Indore &ndash; 452010 (M.P.), India<br /><a href="http://www.apticraft.com/">www.apticraft.com</a></p><p>3. Aptuit Informatics<br />Plot No. 100-103, Export Promotion Industrial Park, White Field, Bangalore-560066<br /><a href="http://www.aptiuit.com/">www.aptiuit.com</a></p><p>4. Bigtec<br />J. K. Towers, 8th Block, Sangam Circle,46th Cross, Bangalore-560082.<br /><a href="http://www.bigtec.org/">www.bigtec.org</a></p><p>5. Bijam Biosciences Private Limited<br />Nagarjuna Hills, Hyderabad 500 082, India<br /><a href="http://www.nagarjunagroup.com/">www.nagarjunagroup.com</a></p><p>6. Bio Base Databases India Pvt Ltd.<br />Crescent Towers, 4th Floor, No : 32/1, Crescent Road, Bnagalore &ndash; 560 001<br /><a href="http://www.biobase-international.com/">www.biobase-international.com</a></p><p>7. BioImagene India Pvt. Ltd.<br />4th floor, C-Wing, Godrej Eternia, Shivajinagar, Pune-411005<br /><a href="http://www.bioimagene.com/">www.bioimagene.com</a></p><p>8. BioInformatics Institute Of India &ndash; Noida<br />C-56 A/28, Sector -62, Noida &ndash; 201 301<br /><a href="http://www.bii.in/">www.bii.in</a></p><p>9. CLC bio India Pvt Ltd<br />#Plot No. 51, H.No. 8-3-214/51, Srinivasa Nagar (West) Ameerpet Hyderabad &ndash; 500 038<br /><a href="http://www.clcbio.com/india">www.clcbio.com/india</a></p><p>10. CytoGenomics India (P) Ltd.<br />#3004, 12A Main HAL 2nd Stage, Bangalore 560008<br /><a href="http://www.silicocyte.com/">www.silicocyte.com</a></p><p>11. Genotypic Technology<br />211, 6th Cross, 80ft Road, RMV II Stage, Bangalore 560094<br /><a href="http://www.genotypic.co.in/">www.genotypic.co.in</a></p><p>12. Genvea Biosciences<br />Dr. D. T. Singh, CSO, 53, Craig Rd. #04-01, Singapore-089691<br /><a href="http://www.genvea.com/">www.genvea.com</a></p><p>13. Helix Info Systems<br />132 A, II Floor, Sterling Towers, IV Cross Street, Sterling Road, Nungambakkam, Chennai.<br /><a href="http://www.helixinfosystems.com/">www.helixinfosystems.com</a></p><p>14. Jalaja Technologies Pvt. Ltd.,<br />21/1,Victoria Layout, Victoria Road, Bangalore-47<br /><a href="http://www.jalaja.com/">www.jalaja.com</a></p><p>15. Jubilant Biosys Ltd<br />#96, Industrial Subrub, 2nd Stage, Yeshwanthpur, Bangalore- 560022<br />Jubilant Organosys Ltd.<br />1A, Sector 16A, Noida &ndash; 201 301 (India)<br /><a href="http://www.jubl.com/">www.jubl.com</a></p><p>16. Kshema Technologies<br />#1, Global Village, Mylasandra, Mysore Road, Bangalore-560 059.<br /><a href="http://www.mphasis.com/">www.mphasis.com</a></p><p>17. LabNetworx<br />B-704, Gitanjali Apartments, Vikas Marg Extension, New Delhi &ndash; 110 092<br /><a href="http://www.labnetworx.com/">www.labnetworx.com</a></p><p>18. LabVantage Solutions Pvt. Ltd.<br />Bengal Intelligent Park, Building C, 2nd Floor, Sector V, Salt Lake Electronics Complex, Kolkata &ndash; 700 091<br /><a href="http://www.labvantage.com/">www.labvantage.com</a></p><p>19. LeadInvent,&nbsp;<br />2nd Floor, Biotech Centre, University of Delhi, South Campus, Benito Juarez Road, New Delhi 110021, India<br />Contact no: +91 11 24119241<br />Email: contact@leadinvent.com<br /><a href="http://www.leadinvent.com">www.leadinvent.com</a></p><p>20. Mascon Life Sciences<br />B &ndash; 8/ 10, Vasant Vihar, New Delhi 110057, India<br /><a href="http://www.masconlifesciences.com/">www.masconlifesciences.com</a></p><p>21. Molecular Connections P Ltd<br />Kandala Mansion, 2/2 Kariappa Road, Near Krishna Rao Park, Basavangudi, Bangalore &ndash; 4<br /><a href="http://www.molecularconnections.com/">www.molecularconnections.com</a></p><p>22.Novo Informatics Pvt. Ltd.<br />TBIU, 2nd Floor, Synergy Building, Indian Institute of Technology,&nbsp;Hauz Khas, New Delhi-16.<br />Contact: 91-11-26581524, 91-11-26581766(Extension: 28)<br />Email: info@novoinformatics.com<br /><a href="http://www.novoinformatics.com">www.novoinformatics.com</a></p><p>23. Ocimum Biosolutions (India) Ltd<br />6th Floor, Reliance Classic, Road No.1 Banjara Hills, Hyderabad 500 034, India.<br /><a href="http://www.ocimumbio.com/">www.ocimumbio.com</a></p><p>24. Scube Scientific Software Solutions<br />613, Hemkunt Chambers, 89, Nehru Place, New Delhi -110 019<br /><a href="http://www.scribeindia.com/">www.scribeindia.com</a></p><p>25. Siri Technologies Pvt Ltd.<br />38/C -23, South End Road, Basavanagudi, Bangalore-56004.<br /><a href="http://www.siritech.com/">www.siritech.com</a></p><p>26. Strand Life Sciences Pvt. Ltd.<br />#237, Sir C. V. Raman Avenue, Raj Mahal Vilas, Bangalore 560 080 INDIA<br /><a href="http://www.strandls.com/">www.strandls.com<br /></a><br />27. SooryaKiran Bioinformatics (P) Ltd<br />TBIC-13, Tejaswini Building, Technopark, Thriruvananthapuram- 695 584, Keralam, India</p><p>Ph: +91 471 4060979,+91 9895404104<br />Email:&nbsp;<a href="mailto:reachus@sooryakiran.com">reachus@sooryakiran.com</a><br /><a href="http://www.sooryakiran.com/">http://www.sooryakiran.com</a></p><p>28. Systat Software Asia Pacific<br />4th Floor, Block 1, Shankar Narayan Building, No.25, MG Road, Bangalore &ndash; 560001<br /><a href="http://www.systat.com/">www.systat.com</a></p><p>29. ABC Genomics (India) Pvt. Ltd.<br />Biotech Park, Sector G, Jankipuram, Kursi Road, Lucknow-226021, U.P., INDIA<br />Tel +91-522-4068579, Email: director@abcgenomics.com<br /><a href="http://www.abcgenomics.com/">www.abcgenomics.com</a></p><p>30. en-GENE-ier's Core Technology Services,<br />1/340, Virat Khand, Gomtinagar,&nbsp;<br />(Near Maharaja Agrasen Public School)<br />lucknow-226010, U.P., India.<br /><a href="http://www.bio.egicore.com/"></a><a href="http://www.bio.egicore.com/">http://www.bio.egicore.com/</a></p><p>&nbsp;</p><p>Best of luck for your job hunts :).</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33741/diya-a-bacterial-annotation-pipeline-for-any-genomics-lab</guid>
	<pubDate>Fri, 30 Jun 2017 08:48:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33741/diya-a-bacterial-annotation-pipeline-for-any-genomics-lab</link>
	<title><![CDATA[DIYA: a bacterial annotation pipeline for any genomics lab]]></title>
	<description><![CDATA[<p><span>DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV</span></p>
<p><span>http://gmod.org/wiki/Diya</span></p><p>Address of the bookmark: <a href="https://sourceforge.net/projects/diyg/" rel="nofollow">https://sourceforge.net/projects/diyg/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1490/bioinformatics-jrf-at-iiser-mohali</guid>
  <pubDate>Thu, 08 Aug 2013 15:56:02 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF at IISER MOHALI]]></title>
  <description><![CDATA[
<p>Applications are invited for a Junior Research Fellow (JRF) in Innovative Young Biotechnologist Award (IYBA) research project funded by Department of Biotechnology (DBT).</p>

<p>The project involves identification and characterization of transcription factors (TFs) from the Arabidopsis shoot apical meristem stem cell niche using genomic approaches and construction of a gene regulatory network for the identified TFs.</p>

<p>Positions: 1</p>

<p>Duration: 1 year but extendable up to three years based on performance and availability of funds.</p>

<p>Emoluments: As per DST rules.</p>

<p>Essential Qualifications: M.Sc. in any branch of life sciences with excellent academic record with CSIR-UGC NET or DBT-JRF. Candidate having previous work experience in the area of bioinformatics, molecular biology and genetics is preferred, but not required.</p>

<p>How to Apply: Applicants are requested to send a cover letter outlining previous research experiences and reasons for joining this position. Please send your complete bio-data including the cover letter as PDF attachment by email to Dr. Ram Yadav at ryadav@iisermohali.ac.in</p>

<p>Last date of submission is 17.00 IST, August 10, 2013.</p>

<p>Advertisement: www.iisermohali.ac.in/project_openings.html#29</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/34368/srbioinformatics-analyst-ngs-at-ocimum</guid>
  <pubDate>Fri, 17 Nov 2017 07:50:44 -0600</pubDate>
  <link></link>
  <title><![CDATA[Sr.Bioinformatics Analyst (NGS) at Ocimum]]></title>
  <description><![CDATA[
<p>JOB FUNCTIONBio Tech/R&amp;D/Scientist<br />INDUSTRYBiotechnology/Pharmaceutical/Medicine<br />SPECIALIZATIONBasic Research,Bio-Statistician,Clinical Research<br />QUALIFICATION<br />Any Post Graduate<br />BA (Arts), B.Com. (Commerce), BE/ B.Tech (Engineering), B.Pharm. (Pharmacy), B.Sc. (Science), BL/LLB, BDS (Dental Surgery), B.Ed. (Education), BHM (Hotel Management), BBA/ BBM/ BBS, B.Arch. (Architecture), BCA (Computer Application), Diploma-Other Diploma, B.Plan. (Planning), BGL, B.V.Sc. (Veterinary Science), Other School/ Graduation, BHMS (Homeopathy), BAMS (Ayurveda)<br />Job Description</p>

<p>1.  Must have basic understanding of molecular biology and Genomics.<br />2. Experience in application development or must have expertise in programming using either of Perl/Python.<br />3.  Experience in statistical programming using R/Bioconductor/Matlab.<br />4. Strong concept in statistical and mathematical modelling.<br />5.  Experience in designing and developing the bioinformatics pipeline.<br />6.  Must have minimum 2+ years of hands on experience in NSG data analysis such as RNA-Seq,Exome-Seq ,Chip-Seq and downstream analysis.<br />7. Knowledge in WGS ,WES, Targeted re-sequencing,GWAS and population genomics will be preferred.<br />8. Must have experience working on opensource software/Framework and commercial software for NGS data analysis and reporting.<br />9. Should be aware of handling big data and guiding team members on multiple projects simultaneously.<br />10. Should have experience coordinating with different groups of clinical research scientist for various project requirements.<br />11. Ability to work as team as well as independently with minimal support.</p>

<p>More at http://www3.ocimumbio.com/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1515/list-of-pharmacogenomics-companies-in-india</guid>
	<pubDate>Fri, 09 Aug 2013 13:26:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1515/list-of-pharmacogenomics-companies-in-india</link>
	<title><![CDATA[List of pharmacogenomics companies in India]]></title>
	<description><![CDATA[<p>pharmacogenomics companies in India are making their good impacts. Here is the list of few pharmacogenomics companies. Please add more if not mentioned here.</p><p>Genomics in India <br /><a href="http://www.ganitlabs.in/">www.ganitlabs.in</a> <br /><a href="http://www.sandor.co.in/">www.sandor.co.in</a> <br /><a href="http://www.igib.res.in/">www.igib.res.in</a> <br /><a href="http://www.genotypic.co.in/">www.genotypic.co.in</a> <br /><a href="http://www.ocimumbio.com/">www.ocimumbio.com</a> <br /><a href="http://www.abcgenomics.com/">www.abcgenomics.com</a> <br /><a href="http://www.xcelrisgenomics.com/">www.xcelrisgenomics.com</a> <br /><a href="http://www.ayugen.com/">www.ayugen.com</a> <br /><a href="http://www.geneombiotech.com/">www.geneombiotech.com</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/2001/the-ontario-institute-for-cancer-research-oicr-genomics-lab-toronto-canada</guid>
  <pubDate>Mon, 12 Aug 2013 01:43:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.]]></title>
  <description><![CDATA[
<p>The Human Genome Project led to the development of a wide array of technologies to screen the genome and its products (genes, proteins, metabolites) and molecules that interact with these products (chemicals, RNAi). The existence of these tools resulted in the creation of facilities that use robotics and informatics to generate high-throughput screens of DNA, RNA, protein, tissue, chemicals and other substances.</p>

<p>The genomics platform uses cancer genome sequencing and other high-throughput techniques to identify genes critical to the development of cancer and anomalies in the genomic profile of the tumours.</p>

<p>For more info visit : http://oicr.on.ca/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/35525/linux-commands-cheat-sheet-for-bioinformatics-and-computational-biology-professionals</guid>
	<pubDate>Mon, 05 Feb 2018 18:50:41 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/35525/linux-commands-cheat-sheet-for-bioinformatics-and-computational-biology-professionals</link>
	<title><![CDATA[Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals]]></title>
	<description><![CDATA[<p><span>The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-liners.</span></p><ul>
<li><span></span><span><strong>File System</strong></span><span><strong><br /> </strong></span><span>ls</span><span>&nbsp;&mdash; list items in current directory</span><span><br /> </span><span>ls -l</span><span>&nbsp;&mdash; list items in current directory and show in long format to see perimissions, size, and modification date</span><span><br /> </span><span>ls -a</span><span>&nbsp;&mdash; list all items in current directory, including hidden files</span><span><br /> </span><span>ls -F</span><span>&nbsp;&mdash; list all items in current directory and show directories with a slash and executables with a star</span><span><br /> </span><span>ls dir</span><span>&nbsp;&mdash; list all items in directory dir</span><span><br /> </span><span>cd dir</span><span>&nbsp;&mdash; change directory to dir</span><span><br /> </span><span>cd ..</span><span>&nbsp;&mdash; go up one directory</span><span><br /> </span><span>cd /</span><span>&nbsp;&mdash; go to the root directory</span><span><br /> </span><span>cd ~</span><span>&nbsp;&mdash; go to to your home directory</span><span><br /> </span><span>cd -</span><span>&nbsp;&mdash; go to the last directory you were just in</span><span><br /> </span><span>pwd</span><span>&nbsp;&mdash; show present working directory</span><span><br /> </span><span>mkdir dir</span><span>&nbsp;&mdash; make directory dir</span><span><br /> </span><span>rm file</span><span>&nbsp;&mdash; remove file</span><span><br /> </span><span>rm -r dir</span><span>&nbsp;&mdash; remove directory dir recursively</span><span><br /> </span><span>cp file1 file2</span><span>&nbsp;&mdash; copy file1 to file2</span><span><br /> </span><span>cp -r dir1 dir2</span><span>&nbsp;&mdash; copy directory dir1 to dir2 recursively</span><span><br /> </span><span>mv file1 file2</span><span>&nbsp;&mdash; move (rename) file1 to file2</span><span><br /> </span><span>ln -s file link</span><span>&nbsp;&mdash; create symbolic link to file</span><span><br /> </span><span>touch file</span><span>&nbsp;&mdash; create or update file</span><span><br /> </span><span>cat file</span><span>&nbsp;&mdash; output the contents of file</span><span><br /> </span><span>less file</span><span>&nbsp;&mdash; view file with page navigation</span><span><br /> </span><span>head file</span><span>&nbsp;&mdash; output the first 10 lines of file</span><span><br /> </span><span>tail file</span><span>&nbsp;&mdash; output the last 10 lines of file</span><span><br /> </span><span>tail -f file</span><span>&nbsp;&mdash; output the contents of file as it grows, starting with the last 10 lines</span><span><br /> </span><span>vim file</span><span>&nbsp;&mdash; edit file</span><span><br /> </span><span>alias name 'command'</span><span>&nbsp;&mdash; create an alias for a command</span><span><br /> </span></li>
<li><span></span><span><strong>System</strong></span><span><strong><br /> </strong></span><span>shutdown</span><span>&nbsp;&mdash; shut down machine</span><span><br /> </span><span>reboot</span><span>&nbsp;&mdash; restart machine</span><span><br /> </span><span>date</span><span>&nbsp;&mdash; show the current date and time</span><span><br /> </span><span>whoami</span><span>&nbsp;&mdash; who you are logged in as</span><span><br /> </span><span>finger user</span><span>&nbsp;&mdash; display information about user</span><span><br /> </span><span>man command</span><span>&nbsp;&mdash; show the manual for command</span><span><br /> </span><span>df</span><span>&nbsp;&mdash; show disk usage</span><span><br /> </span><span>du</span><span>&nbsp;&mdash; show directory space usage</span><span><br /> </span><span>free</span><span>&nbsp;&mdash; show memory and swap usage</span><span><br /> </span><span>whereis app</span><span>&nbsp;&mdash; show possible locations of app</span><span><br /> </span><span>which app</span><span>&nbsp;&mdash; show which app will be run by default</span><span><br /> </span></li>
<li><span></span><span><strong>Process Management</strong></span><span><strong><br /> </strong></span><span>ps</span><span>&nbsp;&mdash; display your currently active processes</span><span><br /> </span><span>top</span><span>&nbsp;&mdash; display all running processes</span><span><br /> </span><span>kill pid</span><span>&nbsp;&mdash; kill process id pid</span><span><br /> </span><span>kill -9 pid</span><span>&nbsp;&mdash; force kill process id pid</span><span><br /> </span></li>
<li><span></span><span><strong>Permissions</strong></span><span><strong><br /> </strong></span><span>ls -l</span><span>&nbsp;&mdash; list items in current directory and show permissions</span><span><br /> </span><span>chmod ugo file</span><span>&nbsp;&mdash; change permissions of file to ugo - u is the user's permissions, g is the group's permissions, and o is everyone else's permissions. The values of u, g, and o can be any number between 0 and 7.</span><span><br /> </span><span>7</span><span>&nbsp;&mdash; full permissions</span><span><br /> </span><span>6</span><span>&nbsp;&mdash; read and write only</span><span><br /> </span><span>5</span><span>&nbsp;&mdash; read and execute only</span><span><br /> </span><span>4</span><span>&nbsp;&mdash; read only</span><span><br /> </span><span>3</span><span>&nbsp;&mdash; write and execute only</span><span><br /> </span><span>2</span><span>&nbsp;&mdash; write only</span><span><br /> </span><span>1</span><span>&nbsp;&mdash; execute only</span><span><br /> </span><span>0</span><span>&nbsp;&mdash; no permissions</span><span><br /> </span><span>chmod 600 file</span><span>&nbsp;&mdash; you can read and write - good for files</span><span><br /> </span><span>chmod 700 file</span><span>&nbsp;&mdash; you can read, write, and execute - good for scripts</span><span><br /> </span><span>chmod 644 file</span><span>&nbsp;&mdash; you can read and write, and everyone else can only read - good for web pages</span><span><br /> </span><span>chmod 755 file</span><span>&nbsp;&mdash; you can read, write, and execute, and everyone else can read and execute - good for programs that you want to share</span><span><br /> </span></li>
<li><span></span><span><strong>Networking</strong></span><span><strong><br /> </strong></span><span>wget file</span><span>&nbsp;&mdash; download a file</span><span><br /> </span><span>curl file</span><span>&nbsp;&mdash; download a file</span><span><br /> </span><span>scp user@host:file dir</span><span>&nbsp;&mdash; secure copy a file from remote server to the dir directory on your machine</span><span><br /> </span><span>scp file user@host:dir</span><span>&nbsp;&mdash; secure copy a file from your machine to the dir directory on a remote server</span><span><br /> </span><span>scp -r user@host:dir dir</span><span>&nbsp;&mdash; secure copy the directory dir from remote server to the directory dir on your machine</span><span><br /> </span><span>ssh user@host</span><span>&nbsp;&mdash; connect to host as user</span><span><br /> </span><span>ssh -p port user@host</span><span>&nbsp;&mdash; connect to host on port as user</span><span><br /> </span><span>ssh-copy-id user@host</span><span>&nbsp;&mdash; add your key to host for user to enable a keyed or passwordless login</span><span><br /> </span><span>ping host</span><span>&nbsp;&mdash; ping host and output results</span><span><br /> </span><span>whois domain</span><span>&nbsp;&mdash; get information for domain</span><span><br /> </span><span>dig domain</span><span>&nbsp;&mdash; get DNS information for domain</span><span><br /> </span><span>dig -x host</span><span>&nbsp;&mdash; reverse lookup host</span><span><br /> </span><span>lsof -i tcp:1337</span><span>&nbsp;&mdash; list all processes running on port 1337</span><span><br /> </span></li>
<li><span></span><span><strong>Searching</strong></span><span><strong><br /> </strong></span><span>grep pattern files</span><span>&nbsp;&mdash; search for pattern in files</span><span><br /> </span><span>grep -r pattern dir</span><span>&nbsp;&mdash; search recursively for pattern in dir</span><span><br /> </span><span>grep -rn pattern dir</span><span>&nbsp;&mdash; search recursively for pattern in dir and show the line number found</span><span><br /> </span><span>grep -r pattern dir --include='*.ext</span><span>&nbsp;&mdash; search recursively for pattern in dir and only search in files with .ext extension</span><span><br /> </span><span>command | grep pattern</span><span>&nbsp;&mdash; search for pattern in the output of command</span><span><br /> </span><span>find file</span><span>&nbsp;&mdash; find all instances of file in real system</span><span><br /> </span><span>locate file</span><span>&nbsp;&mdash; find all instances of file using indexed database built from the updatedb command. Much faster than find</span><span><br /> </span><span>sed -i 's/day/night/g' file</span><span>&nbsp;&mdash; find all occurrences of day in a file and replace them with night - s means substitude and g means global - sed also supports regular expressions</span><span><br /> </span></li>
<li><span></span><span><strong>Compression</strong></span><span><strong><br /> </strong></span><span>tar cf file.tar files</span><span>&nbsp;&mdash; create a tar named file.tar containing files</span><span><br /> </span><span>tar xf file.tar</span><span>&nbsp;&mdash; extract the files from file.tar</span><span><br /> </span><span>tar czf file.tar.gz files</span><span>&nbsp;&mdash; create a tar with Gzip compression</span><span><br /> </span><span>tar xzf file.tar.gz</span><span>&nbsp;&mdash; extract a tar using Gzip</span><span><br /> </span><span>gzip file</span><span>&nbsp;&mdash; compresses file and renames it to file.gz</span><span><br /> </span><span>gzip -d file.gz</span><span>&nbsp;&mdash; decompresses file.gz back to file</span><span><br /> </span></li>
<li><span></span><span><strong>Shortcuts</strong></span><span><strong><br /> </strong></span><span>ctrl+a</span><span>&nbsp;&mdash; move cursor to beginning of line</span><span><br /> </span><span>ctrl+f</span><span>&nbsp;&mdash; move cursor to end of line</span><span><br /> </span><span>alt+f</span><span>&nbsp;&mdash; move cursor forward 1 word</span><span><br /> </span><span>alt+b</span><span>&nbsp;&mdash; move cursor backward 1 word</span><span><br /> </span></li>
<li></li>
</ul>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4551/au-kbc-lab</guid>
  <pubDate>Sun, 15 Sep 2013 09:33:59 -0500</pubDate>
  <link></link>
  <title><![CDATA[AU-KBC Lab]]></title>
  <description><![CDATA[
<p>Conducting Clinical Trial Management Course combined with the Apollo Hospitals. Major Research in bioinformatics as Drug Discovery, Functional Genomics, Comparative genomics, Data Mining </p>

<p>More @ http://www.au-kbc.org/</p>
]]></description>
</item>

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