<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26426?offset=460</link>
	<atom:link href="https://bioinformaticsonline.com/related/26426?offset=460" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36997/cgview-circular-genome-viewer</guid>
	<pubDate>Wed, 20 Jun 2018 10:15:57 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36997/cgview-circular-genome-viewer</link>
	<title><![CDATA[CGView - Circular Genome Viewer]]></title>
	<description><![CDATA[CGView is a Java package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating visual output suitable for the web. Feature information and rendering options are supplied to the program using an XML file, a tab delimited file, or an NCBI ptt file. CGView converts the input into a graphical map (PNG, JPG, or Scalable Vector Graphics format), complete with labels, a title, legends, and footnotes. In addition to the default full view map, the program can generate a series of hyperlinked maps showing expanded views. The linked maps can be explored using any web browser, allowing rapid genome browsing, and facilitating data sharing. The feature labels in maps can be hyperlinked to external resources, allowing CGView maps to be integrated with existing web site content or databases. For examples of the various output types, see the CGView gallery.

http://wishart.biology.ualberta.ca/cgview/gallery.html

http://stothard.afns.ualberta.ca/downloads/CCT/index.html

https://www.gview.ca/wiki/GView/WebHome

https://server.gview.ca/

http://stothard.afns.ualberta.ca/cgview_server/

Paper https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx081/4037458<p>Address of the bookmark: <a href="http://wishart.biology.ualberta.ca/cgview/" rel="nofollow">http://wishart.biology.ualberta.ca/cgview/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21095/ra-walk-in-interview-actrec</guid>
  <pubDate>Mon, 09 Feb 2015 01:06:16 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA WALK-IN-INTERVIEW @ ACTREC]]></title>
  <description><![CDATA[
<p>No. ACTREC/Advt./ 7 /2015</p>

<p>Title of the Project<br />Research Associate<br />(One position)<br />DBTs Biotechnology/Bioinformatics training centre<br />PI Dr. Ashok Varma	</p>

<p>Duration of the Project Six Months from the date of appointment, can be extended further for six month.</p>

<p>Date &amp; Time: 17th February, 2015 at 10.00 a.m.</p>

<p>Venue: Meeting Room, 3rd floor, Khanolkar Shodhika, ACTREC</p>

<p>Essential Qualifications and Experience:</p>

<p>Ph.D. Degree in Basic Sciences from recognized University. Research experience in Bioinformatics or on gene cloning, protein purification, and crystallization.</p>

<p>*M.Sc. degree obtained after a one year course will not be considered.</p>

<p>Selected candidate will have to join at the earliest.</p>

<p>Consolidated Salary: Rs.28,600/- p.m. {Rs.22,000/- + 30% HRA}</p>

<p>The work progress of the candidate will be monitored and extension after 6 months will depend on satisfactory progress of the work.</p>

<p>Candidates fulfilling these requirements should pre-register by sending their application in the prescribed format with recent CV and contact details of 2 referees by e-mail to ‘program.office@actrec.gov.in’ latest by 17.00 hrs on 12-02-2015.<br />The interviews would be held on 17th February, 2015 and will be only for the pre-registered candidates. Candidates should report between 09.30 to 10.00 a.m. in Steno Pool, 3rd floor, Khanolkar Shodhika, ACTREC, Kharghar, Navi Mumbai.<br />No T.A./D.A. will be admissible for attending the interview.</p>

<p>At the time of Interview the candidate should bring original certificates along with CV with contact details of 2 referees and submit the photocopies (attested) of the certificates, with a recent passport size photograph.</p>

<p>All correspondence should be strictly made only to ‘program.office@actrec.gov.in’ as indicated.</p>

<p>Advertisement: www.actrec.gov.in/data%20files/2015/AV-RA-DBT-28-1-15.docx</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/37927/you-cant-hide-from-genome-hackers</guid>
	<pubDate>Sat, 13 Oct 2018 14:17:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/37927/you-cant-hide-from-genome-hackers</link>
	<title><![CDATA[You can't hide from Genome Hackers]]></title>
	<description><![CDATA[<p><span>Young computational biologist named Yaniv Erlich shocked the research world by showing it was possible to&nbsp;</span><a href="https://www.wired.com/2013/01/your-genome-could-reveal-your-identity/">unmask the identities</a><span>&nbsp;of people listed in anonymous genetic databases using&nbsp;</span><a href="http://science.sciencemag.org/content/339/6117/321" target="_blank">only an Internet connection</a></p><p>Paper: http://science.sciencemag.org/content/early/2018/10/10/science.aau4832</p><p>More at&nbsp;https://www.wired.com/story/genome-hackers-show-no-ones-dna-is-anonymous-anymore/</p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21242/summer-intern-research-bioinformatics</guid>
  <pubDate>Mon, 16 Feb 2015 12:26:32 -0600</pubDate>
  <link></link>
  <title><![CDATA[Summer Intern - Research Bioinformatics]]></title>
  <description><![CDATA[
<p>Be proficient in LINUX, know perl or python, understand biology and Next Generation Sequencing.<br />The intern will port Agile Assay Design pipelines into Galaxy.<br />The intern will also learn to develope his/her own bioinformatics pipelines for PCR or NGS data analysis.</p>

<p>Who you are<br />You’re someone who wants to influence your own development. You’re looking for a company where you have the opportunity to pursue your interests across functions and geographies. Where a job title is not considered the final definition of who you are, but the starting point.</p>

<p>Qualifications:<br />Major: Bioinformatcis or biology major who is interested and wants to learn Biocomputing, At least 2 years of college.<br />Basic knowledge of LINUX and programming, e.g., perl, python, XML.</p>

<p>More at http://www.roche.com/careers/jobs/jobsearch/job.htm?id=E-00437679&amp;locale=en&amp;title=Summer%20Intern%20-%20Research%20Bioinformatics</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38215/pwhatshap-a-parallel-high-performance-version-of-whatshap</guid>
	<pubDate>Wed, 14 Nov 2018 08:20:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38215/pwhatshap-a-parallel-high-performance-version-of-whatshap</link>
	<title><![CDATA[pWhatsHap: a parallel, high-performance version of WhatsHap]]></title>
	<description><![CDATA[<div id="ASec4">
<p>Given the potential relevance of efficient haplotyping in several analysis pipelines, we have designed and engineered&nbsp;pWhatsHap, a parallel, high-performance version of&nbsp;WhatsHap.&nbsp;pWhatsHap&nbsp;is embedded in a toolkit developed in Python and supports genomics datasets in standard file formats. Building on&nbsp;WhatsHap,&nbsp;pWhatsHap&nbsp;exhibits the same complexity exploring a number of possible solutions which is exponential in the coverage of the dataset. The parallel implementation on multi-core architectures allows for a relevant reduction of the execution time for haplotyping, while the provided results enjoy the same high accuracy as that provided by&nbsp;WhatsHap, which increases with coverage.</p>
</div>
<p>https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1170-y</p><p>Address of the bookmark: <a href="https://bitbucket.org/whatshap/whatshap" rel="nofollow">https://bitbucket.org/whatshap/whatshap</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21436/jrf-bioinformatics-iisr-kozhikode</guid>
  <pubDate>Tue, 24 Feb 2015 08:44:17 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ IISR, Kozhikode]]></title>
  <description><![CDATA[
<p>JRF Bioinformatics Jobs recruitment in Indian Institute of Spices Research on temporary basis</p>

<p>Name of the Scheme : Distributed Information Sub Centre – DISC</p>

<p>Qualifications :  M.Sc/ B Tech in Bioinformatics with NET/GATE or M Tech in Bioinformatics</p>

<p>Number of posts : One</p>

<p>Emoluments : Rs. 25,000/-</p>

<p>Upper age limit : 35 years for Men &amp; 40 years for Women as on date of Interview<br />How to apply</p>

<p>Date of Interview : 12-03-2015 at 10.00 AM. All relevant certificates (in original) and bio data, No objection certificate in case he/she is employed elsewhere and experience certificate in original (if any) need to be produced at the time of interview.</p>

<p>More at http://spices.res.in/index.php?option=com_content&amp;view=article&amp;id=263</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38515/genome-annotation-using-maker-tutorial</guid>
	<pubDate>Thu, 20 Dec 2018 17:39:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38515/genome-annotation-using-maker-tutorial</link>
	<title><![CDATA[Genome Annotation using MAKER tutorial !]]></title>
	<description><![CDATA[<p><a href="http://www.yandell-lab.org/software/maker.html">MAKER</a><span>&nbsp;is a great tool for annotating a reference genome using empirical and&nbsp;</span><em>ab initio</em><span>gene predictions.&nbsp;</span><a href="http://gmod.org/wiki/Main_Page">GMOD</a><span>, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to wrap my head completely around everything. Here I will describe a&nbsp;</span><em>de novo</em><span>&nbsp;genome annotation for&nbsp;</span><em>Boa constrictor</em><span>&nbsp;in detail, so that there is a record and that it is easy to use this as a guide to annotate any genome.</span></p><p>Address of the bookmark: <a href="https://www.biostars.org/p/261203/" rel="nofollow">https://www.biostars.org/p/261203/</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38801/genome-assembly-forensics-finding-the-elusive-mis-assembly</guid>
	<pubDate>Sat, 26 Jan 2019 18:02:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38801/genome-assembly-forensics-finding-the-elusive-mis-assembly</link>
	<title><![CDATA[Genome assembly forensics: finding the elusive mis-assembly]]></title>
	<description><![CDATA[<p><span>We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and describes their implementation in our automated validation pipeline, called&nbsp;</span><em>amosvalidate</em><span>. We demonstrate the application of our pipeline in both bacterial and eukaryotic genome assemblies, and highlight several assembly errors in both draft and finished genomes. The software described is compatible with common assembly formats and is released, open-source, at&nbsp;</span><a href="http://amos.sourceforge.net/" target="_blank">http://amos.sourceforge.net</a><span>.</span></p>
<p>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397507/&nbsp;</p>
<p>http://amos.sourceforge.net/wiki/index.php/AMOS</p><p>Address of the bookmark: <a href="http://amos.sourceforge.net/wiki/index.php/AMOS" rel="nofollow">http://amos.sourceforge.net/wiki/index.php/AMOS</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21830/research-associate-bioinformatics-job-position-in-indian-agricultural-statistics-research-institute-iasri</guid>
  <pubDate>Tue, 31 Mar 2015 20:45:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics job position in Indian Agricultural Statistics Research Institute (IASRI)]]></title>
  <description><![CDATA[
<p>Research Associate Bioinformatics job position in Indian Agricultural Statistics Research Institute (IASRI)</p>

<p>Qualification : Ph.D. in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent. Desirable: Knowledge of Statistical and Computational Genomics/ Proteomics/ Bioinformatics OR Post-Graduation in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent with 1st Division or 60% marks or equivalent with at least two years of research experience. Desirable:Expertise on use of various software/ tool.</p>

<p>No.of Post: 2</p>

<p>Emoluments for RA: Consolidated Rs. 24000/- per month + 30% HRA for Ph.D holders and consolidated Rs. 23000/- per month + 30% HRA for Master Degree.</p>

<p>Age Limit : Age should not be more than 40 years for the post of Research associate (5 years relaxation for SC/ST/ women candidates) and 3 years for OBC candidates as on date of interview.<br />How to apply</p>

<p>Interested candidates are invited to appear for Walk-In interview at Indian Agricultural Statistics Research Institute, Library Avenue, Pusa, New Delhi -110012, along with filled in application form , all the original certificates from matriculation onwards, Ph.D. or M.Sc. certificate (as the case may be) must be produced at the time of interview in either original or provisional, Bio-Data, attested copies of all experience certificates, testimonials etc., one passport size photograph and one set of the self-attested photocopies of all the required certificates from matriculation onwards and an attested copy of recent passport size photograph pasted onto the application form. Walk-in interview will be held on 16th April, 2015 at 10:30 a.m.</p>

<p>Click Here for Job Details &amp; Application Form http://www.iasri.res.in/employment/employment.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39821/gvolante-completeness-assessment-of-genometranscriptome-sequences</guid>
	<pubDate>Tue, 06 Aug 2019 21:37:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39821/gvolante-completeness-assessment-of-genometranscriptome-sequences</link>
	<title><![CDATA[gVolante: Completeness Assessment of Genome/Transcriptome Sequences]]></title>
	<description><![CDATA[<p><strong>gVolante</strong><span>&nbsp;provides an online interface for completeness assessment of user&rsquo;s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.</span></p>
<p><img src="https://gvolante.riken.jp/images/assessment.png" width="937" height="545" alt="image" style="border: 0px;"></p><p>Address of the bookmark: <a href="https://gvolante.riken.jp/" rel="nofollow">https://gvolante.riken.jp/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

</channel>
</rss>