<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26573?offset=1280</link>
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	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43693/plar-pipeline-for-lncrna-annotation-from-rna-seq-data</guid>
	<pubDate>Fri, 07 Jan 2022 06:18:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43693/plar-pipeline-for-lncrna-annotation-from-rna-seq-data</link>
	<title><![CDATA[PLAR: Pipeline for lncRNA annotation from RNA-seq data]]></title>
	<description><![CDATA[<p><span>Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs from other species identified by PLAR. Available&nbsp;</span><a href="ftp://ftp-igor.weizmann.ac.il/pub/gencode_orthologs_v3.txt.gz">here</a><span>.</span></p>
<p>&nbsp;</p>
<table border="1" cellspacing="0" cellpadding="0">
<tbody>
<tr>
<td rowspan="1" colspan="1">
<p><strong>Species</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Assembly</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Code</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Transcriptome</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>lncRNAs</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Protein-coding</strong></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Human</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2Fhg19%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNE8D2HpSsuVeU5oUWAahOi6qUkSTA">hg19</a></p>
</td>
<td rowspan="1" colspan="1">
<p>hg19</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/hg19.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/hg19.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/hg19.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Rhesus</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FrheMac3%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNE9JVXif3Efp4FVGd43K-BjTjrpwQ">rheMac3</a></p>
</td>
<td rowspan="1" colspan="1">
<p>rm3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/rm3.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/rm3.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/rm3.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Marmoset</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FcalJac3%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNERBzLoHTuzHgX48eG9B5JwHfJeUg">calJac3</a></p>
</td>
<td rowspan="1" colspan="1">
<p>cj3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cj3.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cj3.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cj3.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Mouse</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2Fmm9%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNFn4Vo-WHyxU1rVfWVKfgYCsdbvBw">mm9</a></p>
</td>
<td rowspan="1" colspan="1">
<p>mm9</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mm9.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mm9.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mm9.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Rabbit</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2ForyCun2%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNHV9p_9vZ6-wtW3ofOStkok2HmGYg">oryCun2</a></p>
</td>
<td rowspan="1" colspan="1">
<p>oc2</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/oc2.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/oc2.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/oc2.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Dog</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FcanFam3%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNF_CL0xW8BrQktADnX1_cKL5r7Zyw">canFam3</a></p>
</td>
<td rowspan="1" colspan="1">
<p>cf3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cf3.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cf3.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cf3.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Ferret</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://hgdownload.soe.ucsc.edu/goldenPath/musFur1/bigZips/">musFur1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>oa3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mf1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mf1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mf1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Opossum</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FmonDom5%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNFeZz8NVTDJzR7uP7dIFOnACpuL7A">monDom5</a></p>
</td>
<td rowspan="1" colspan="1">
<p>md5</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/md5.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/md5.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/md5.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Chicken</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FgalGal4%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNFDsmU33MtwXzpaZZQHlrfI4OwsyA">galGal4</a></p>
</td>
<td rowspan="1" colspan="1">
<p>gg4</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/gg4.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/gg4.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/gg4.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Lizard</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FanoCar2%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEt4SZWNfHnA7MvJ6RWiql_yut4og">anoCar2</a></p>
</td>
<td rowspan="1" colspan="1">
<p>ac2</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ac2.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ac2.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ac2.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Coelacanth</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FlatCha1%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNH17mc_Am63OygexvbH391-GPoqBg">latCha1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>lc1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lc1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lc1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lc1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Zebrafish</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FdanRer7%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEgbPFFLxSYaERAtOLpbqIa5NmeCA">danRer7</a></p>
</td>
<td rowspan="1" colspan="1">
<p>dr7</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/dr7.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/dr7.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/dr7.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Stickleback</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload-test.sdsc.edu%2FgoldenPath%2FgasAcu1%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNHLiWgr54hkQYAxKeU9FJn0FKzEDA">gasAcu1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>ga1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ga1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ga1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ga1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Nile tilapia</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2ForeNil2%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEgaAhALRYb2ZYx_ItCO53E3mgZ2w">oreNil2</a></p>
</td>
<td rowspan="1" colspan="1">
<p>ot2</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ot2.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ot2.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ot2.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Spotted gar</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload-test.cse.ucsc.edu%2FgoldenPath%2FlepOcu1%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEbTQSWyyyZXk3eYiwkkAySMRdKTg">lepOcu1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>lo1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lo1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lo1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lo1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Elephant shark</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FcalMil1%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNH2mc_GFk5E6kmVXftLL2lZVClIUQ">calMil1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>cm1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cm1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cm1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cm1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Sea urchin</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload-test.cse.ucsc.edu%2FgoldenPath%2FstrPur4%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNHQ_Coxb_z7jTAweTFkO0KtHZKjEA">strPur4</a></p>
</td>
<td rowspan="1" colspan="1">
<p>sp4</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/sp4.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/sp4.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/sp4.coding.bed.gz">Download</a></p>
</td>
</tr>
</tbody>
</table>
<p>&nbsp;</p><p>Address of the bookmark: <a href="http://www.weizmann.ac.il/Biological_Regulation/IgorUlitsky/PLAR" rel="nofollow">http://www.weizmann.ac.il/Biological_Regulation/IgorUlitsky/PLAR</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19541/bioinformatics-sub-dic-dic</guid>
  <pubDate>Fri, 12 Dec 2014 21:14:57 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SUB DIC (DIC)]]></title>
  <description><![CDATA[
<p>Project Title BIOINFORMATICS SUB DIC (DIC)</p>

<p>Reference Number IIT/SRIC/R/DIC/2014/314, DATED 28thNovember, 2014</p>

<p>Temporary Position(s)</p>

<p>i) Junior/ Senior Project Officer (1)<br />ii) Junior Project Assistant (2)</p>

<p>Consolidated Compensation</p>

<p>i) Rs.16,000/- to Rs.18,000/- p.m. (depending on qualification &amp; experience)<br />ii) Rs.8,000/- to Rs.10,000/- p.m. (depending on qualification &amp; experience)</p>

<p>Coordinator / PI Dr. Sudip K. Ghosh, Dept of Biotechnology.</p>

<p>Department / Centre / School Dept of Biotechnology </p>

<p>Qualifications &amp; Experience</p>

<p>(i) M. Sc in any branch of Life Sciences with experience in Molecular  Biology/Genetics/Biochemistry preferably a Post Graduate diploma in Bioinformatics or two years working experience in bioinformatics (Minimum 60% marks starting from matriculation examination).</p>

<p>(ii) B. Sc. /B.A. /B. Com/Diploma in Management or Computer Science. Knowledge in computer software will be preferred (minimum 50% marks starting from matriculation examination).</p>

<p>More Information</p>

<p>Interested eligible persons may apply on plain paper, giving full bio-data along with attested copies of testimonials to the undersigned on or before 11thDecember, 2014. </p>

<p>Sponsor DBT, NEW DELHI</p>

<p>Last Date 11 Dec 2014</p>

<p>Application Fee Demand Draft for Rs.50/- (Not for female candidates) drawn in favour of IIT Kharagpur payable at Kharagpur</p>

<p>Advertisement: www.iitkgp.ac.in/topfiles/sric_job_details.php?serial=2826</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43846/the-complete-sequence-of-a-human-genome</guid>
	<pubDate>Thu, 31 Mar 2022 23:58:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43846/the-complete-sequence-of-a-human-genome</link>
	<title><![CDATA[The complete sequence of a human genome]]></title>
	<description><![CDATA[<p><span>The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies.</span></p><p>Address of the bookmark: <a href="https://www.science.org/doi/10.1126/science.abj6987" rel="nofollow">https://www.science.org/doi/10.1126/science.abj6987</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19580/internship-program-for-bioinformatics-biotechnology-mba-mca-no-of-vacancy-5</guid>
  <pubDate>Mon, 15 Dec 2014 08:11:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[Internship Program for Bioinformatics / Biotechnology / MBA / MCA (No. Of Vacancy: 5)]]></title>
  <description><![CDATA[
<p>ArrayGen is offering an Internship Program for Post graduate Bioinformatics / Biotechnology / MBA / MCA students and professionals. ArrayGen Technologies provide an excellent opportunity to gain research experience and explore if a scientific career is right for you. Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis or marketing or software development. Applications are accepted throughout the year. Accepted students will be notified through email.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44311/jbrowse-2-a-modular-genome-browser-with-views-of-synteny-and-structural-variation</guid>
	<pubDate>Tue, 25 Apr 2023 20:58:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44311/jbrowse-2-a-modular-genome-browser-with-views-of-synteny-and-structural-variation</link>
	<title><![CDATA[JBrowse 2: a modular genome browser with views of synteny and structural variation]]></title>
	<description><![CDATA[<ul dir="auto">
<li>igvjs - a create-react-app with igv package from npm installed. the igv.js is instrumented to output "DONE" to the console when finished, and to have an increased fetchSizeLimit (which is otherwise git in CRAM longread tests)</li>
<li>jb2-web - stock instance of jbrowse-web v1.7.5</li>
<li>jb1 - stock instance of jbrowse 1 v1.16.11</li>
<li>jb2 embedded - a create-react-app with @jbrowse/react-linear-genome-view</li>
</ul><p>Address of the bookmark: <a href="https://github.com/GMOD/jb2profile" rel="nofollow">https://github.com/GMOD/jb2profile</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19792/irishgrid-irish-grid-mapping-system</guid>
	<pubDate>Fri, 26 Dec 2014 07:53:24 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19792/irishgrid-irish-grid-mapping-system</link>
	<title><![CDATA[irishgrid: Irish Grid Mapping System]]></title>
	<description><![CDATA[<p>Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format.</p>
<p>Originally design to map the location of objects in a 10 km map IrishGrid includes:</p>
<ul>
<li>native support of the Irish Grid System (see <a href="http://www.osi.ie/">http://www.osi.ie/</a>)</li>
<li>optimize for speed (there's as less as possible data to conversion)</li>
<li>customized color functions</li>
</ul>
<p>https://code.google.com/p/irishgrid/downloads/detail?name=irishgrid.pl</p><p>Address of the bookmark: <a href="https://code.google.com/p/irishgrid/" rel="nofollow">https://code.google.com/p/irishgrid/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44483/baclife-an-automated-genome-mining-tool-for-identification-of-lifestyle-associated-genes</guid>
	<pubDate>Fri, 15 Mar 2024 04:59:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44483/baclife-an-automated-genome-mining-tool-for-identification-of-lifestyle-associated-genes</link>
	<title><![CDATA[bacLIFE: an automated genome mining tool for identification of lifestyle associated genes]]></title>
	<description><![CDATA[<p style="margin-top: 0px; margin-bottom: 16px; color: #1f2328; font-size: 16px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff;" dir="auto">bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pinpoint candidate genes, denominated<span>&nbsp;</span><strong style="font-weight: var(--base-text-weight-semibold, 600);">lifestyle-associated genes (LAGs)</strong>, and biosynthetic gene clusters associated with each lifestyle detected. This whole process is divided into different modules:</p>
<ul style="margin-top: 0px; margin-bottom: 16px; color: #1f2328; font-size: 16px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff;" dir="auto">
<li><strong style="font-weight: var(--base-text-weight-semibold, 600);">Clustering module</strong><span>&nbsp;</span>Predicts, clusters and annotates the genes of every input genome</li>
<li style="margin-top: 0.25em;"><strong style="font-weight: var(--base-text-weight-semibold, 600);">Lifestyle prediction</strong><span>&nbsp;</span>Employs a machine learning model to forecast bacterial lifestyle or other specified metadata</li>
<li style="margin-top: 0.25em;"><strong style="font-weight: var(--base-text-weight-semibold, 600);">Analitical module (Shiny app)</strong><span>&nbsp;</span>Results from the previous modules are embedded in a user-friendly interface for comprehensive and interactive comparative genomics.</li>
</ul>
<p style="margin-top: 0px; margin-bottom: 16px; color: #1f2328; font-size: 16px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff;" dir="auto">You can find the complete wiki here [<a href="https://github.com/Carrion-lab/bacLIFE/wiki/bacLIFE-wiki">https://github.com/Carrion-lab/bacLIFE/wiki/bacLIFE-wiki</a>]</p><p>Address of the bookmark: <a href="https://github.com/Carrion-lab/bacLIFE" rel="nofollow">https://github.com/Carrion-lab/bacLIFE</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23536/teaching-assistant-at-svims</guid>
  <pubDate>Fri, 31 Jul 2015 10:15:16 -0500</pubDate>
  <link></link>
  <title><![CDATA[Teaching Assistant at SVIMS]]></title>
  <description><![CDATA[
<p>Eligible candidates are invited for a walk-in-interview for recruitment of Teaching Assistant in the Department of Bioinformatics on 8.08.2015 at 10 A.M. in the Committee Hall, SVIMS, Tirupati. The candidates have to attend with all original certificates of qualification, experience on the date of interview. The engagement will be made purely on adhoc basis for a period of 6 months and it can be terminated at any time without notice or without assigning any reason thereof. This is purely an adhoc appointment and the candidate will not have any right to claim permanent benefits of any kind.</p>

<p>1. Remuneration : Rs. 12000/- per month (consolidated)</p>

<p>2. Qualification : M.Sc./M.Tech. Bioinformatics (preference will be given to the candidates with BINC / NET / GATE / Bioinformatics DBT-Traineeship / Studentship and teaching experience)</p>

<p>3. Place of work : Department of Bioinformatics, SVIMS, Tirupati</p>

<p>4. No. of Position : One</p>

<p>Terms and conditions:</p>

<p>1. Candidates are required to submit the Biodata, attested copies of relevant certificates in support of their age, educational qualification, experience etc., before the interview committee, SVIMS University, Tirupati.<br />2. No TA / DA will be paid for attending the interview.<br />3. Interim enquiries will not be entertained.<br />4. The maximum age limit for Teaching Assistant is 34 years as on 8th August, 2015.<br />5. The tenure of will be further extended subject to performance of the incumbent.</p>

<p>Advertisement: http://svimsbic.org/Teaching_Assistant_B.I._2015.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/view/982</guid>
	<pubDate>Wed, 17 Jul 2013 15:25:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/view/982</link>
	<title><![CDATA[Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?]]></title>
	<description><![CDATA[<p><span>Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete<em> de novo</em> assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?</span></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/view/19838</guid>
	<pubDate>Sat, 27 Dec 2014 13:30:15 -0600</pubDate>
	<link>https://bioinformaticsonline.com/view/19838</link>
	<title><![CDATA[Interview with a bioinformatician series ...]]></title>
	<description><![CDATA[<p>The aim of this series to interviews some notable bioinformaticians to get their views on various aspects of bioinformatics research. Hopefully these answers will prove useful to others in the field, especially to those who are just starting their bioinformatics careers.<br /><br />This series will be available at BOL every fortnight.<br /><br /><br /><br /></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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