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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26573?offset=900</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42012/phewas-r-package-is-designed-to-provide-an-accessible-interface-to-the-phenome-wide-association-study</guid>
	<pubDate>Thu, 30 Jul 2020 22:06:37 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42012/phewas-r-package-is-designed-to-provide-an-accessible-interface-to-the-phenome-wide-association-study</link>
	<title><![CDATA[PheWAS: R package is designed to provide an accessible interface to the phenome wide association study]]></title>
	<description><![CDATA[<p>The PheWAS R package is designed to provide an accessible interface to the phenome wide association study. For a description of the methods available and some simple examples, please see the&nbsp;<a href="https://github.com/PheWAS/PheWAS/blob/master/inst/doc/PheWAS-package.pdf?raw=true">package vignette</a>&nbsp;or the R documentation. For installation help, see below. ##Installing the PheWAS Package The PheWAS package can be installed using the devtools package. The following code when executed in R will get you started:</p>
<pre><code>install.packages("devtools")
#It may be necessary to install required as not all package dependencies are installed by devtools:
install.packages(c("dplyr","tidyr","ggplot2","MASS","meta","ggrepel","DT"))
devtools::install_github("PheWAS/PheWAS")
library(PheWAS)</code></pre><p>Address of the bookmark: <a href="https://github.com/PheWAS/PheWAS" rel="nofollow">https://github.com/PheWAS/PheWAS</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24258/postdoctoral-fellowship-at-department-of-psychiatry-warneford-hospital-oxford</guid>
  <pubDate>Tue, 01 Sep 2015 05:24:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellowship at Department of Psychiatry, Warneford Hospital, Oxford]]></title>
  <description><![CDATA[
<p>Applications are invited for a postdoctoral research assistant to work in the Translational Neuroscience and Dementia Research Group (TNDRG) on a project using informatics approaches to understand and prevent dementia, specifically on the role of the immune system in Alzheimer’s. The post is for a fixed-term duration of 1 year.</p>

<p>Working with other members of the TNDRG you will analyse complex genomic and epidemiological datasets, evaluating which computational tools are most suitable. You will contribute to the generation of innovative tools for linking epidemiological and multilevel omics datasets, ensuring that computer programs are written in a form that other collaborators can use and expand.</p>

<p>You will have or be close to completion of a PhD in either: bioinformatics; neuroscience; machine learning; statistics; epidemiology; neurology; or other relevant field. You will have experience programming on either R, Matlab, Python, C++, Java or any other imperative, object oriented or functional language.</p>

<p>Please direct Informal enquiries to Dr Alejo Nevado-Holgado (alejo.nevado-holgado@psych.ox.ac.uk).</p>

<p>You will be required to upload a supporting statement explaining how you meet the selection criteria for the post, a CV, and details of two referees as part of your online application.</p>

<p>The closing date for applications is 12.00 midday on 2 September 2015. Interviews will be held on Tuesday 15 September 2015. </p>

<p>https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.jobspec?p_id=118696</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43546/introduction-to-phylogenies-in-r</guid>
	<pubDate>Wed, 13 Oct 2021 02:27:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43546/introduction-to-phylogenies-in-r</link>
	<title><![CDATA[Introduction to phylogenies in R]]></title>
	<description><![CDATA[<p><span>R phylogenetics is built on the contributed packages for phylogenetics in R, and there are many such packages. Let's begin today by installing a few critical packages, such as ape, phangorn, phytools, and geiger. To get the most recent CRAN version of these packages, you will need to have R 3.3.x installed on your computer!</span></p><p>Address of the bookmark: <a href="http://www.phytools.org/Cordoba2017/ex/2/Intro-to-phylogenies.html" rel="nofollow">http://www.phytools.org/Cordoba2017/ex/2/Intro-to-phylogenies.html</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24328/walk-in-interview-for-srf-jrf-posts-at-junagadh-agricultural-university</guid>
  <pubDate>Tue, 08 Sep 2015 11:58:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University]]></title>
  <description><![CDATA[
<p>Job Description: Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University</p>

<p>Junagadh Agricultural University has given a recruitment notification to fill the posts of Senior, Junior Research Fellows in the establishment.</p>

<p>Name &amp; No: of Posts:</p>

<p>1. Senior Research Fellow: 05<br />2. Junior Research Fellow: 05</p>

<p>Title of the Projects under Senior Research Fellow:</p>

<p>1. Molecular mapping of important traits and their transfer through marker assisted selection in Groundnut and cotton<br />2. Aflatoxin and its management in groundnut at Saurashtra region of Gujarat.<br />3. Improvement in Agricultural Production through nanotechnological inventions at Junagadh.<br />4. Synthesis and Characterisation of chitosan based NPK-Nano fertilizers</p>

<p>Title of the Projects under Junior Research Fellow:</p>

<p>1. Improvement in Agricultural Production Through Nanotechnological Inventions at Junagadh.<br />2. Synthesis and Characterisation of chitosan based NPK-Nano fertilizers</p>

<p>Required Eligibility Criteria:</p>

<p>1. Senior Research Fellow:</p>

<p>Age Limit: Candidates age must be maximum 35 years<br />Educational Qualification: M.Sc in Nanotechnology/Biotechnology/Bioinformatics<br />Salary: Rs. 16,000/- + HRA for first and second year, Rs. 18,000/- + HRA during third year</p>

<p>2. Junior Research Fellow:</p>

<p>Age Limit: Candidates age must be maximum 30 years<br />Educational Qualification: B.Sc or M.Sc degree in the field of Nanotechnology/Biotechnology<br />Salary: Rs. 9,600/- , Rs. 14,400/- p.m</p>

<p>Eligible candidates may attend the walk-in-interview on 10-09-2015 with necessary certificates of testimonials</p>

<p>Click Here for Detailed Recruitment Notification<br />http://www.jau.in/attachments/Advt/BiotechSRFJRF.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44414/reconplot-an-r-package-for-the-visualization-and-interpretation-of-genomic-rearrangements</guid>
	<pubDate>Thu, 14 Dec 2023 12:33:19 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44414/reconplot-an-r-package-for-the-visualization-and-interpretation-of-genomic-rearrangements</link>
	<title><![CDATA[ReConPlot: an R package for the visualization and interpretation of genomic rearrangements]]></title>
	<description><![CDATA[<p>ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing customization of plots and the generation of publication-quality figures with minimal effort.</p><p>Address of the bookmark: <a href="https://academic.oup.com/bioinformatics/article/39/12/btad719/7460198?login=false" rel="nofollow">https://academic.oup.com/bioinformatics/article/39/12/btad719/7460198?login=false</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24463/project-fellow-at-indian-institute-of-chemical-biology-iicb</guid>
  <pubDate>Tue, 22 Sep 2015 23:47:35 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Fellow at Indian Institute of Chemical Biology (IICB)]]></title>
  <description><![CDATA[
<p>Advertisement No. : R&amp;C/CD/427/2015  ,Vacancy Code: 4271501    </p>

<p>Project Fellow Bioinformatics recruitment in Indian Institute of Chemical Biology (IICB) purely temporary </p>

<p>Name of the Project:  "Genomics and Informatics Solutions for Integrating Biology(Genesis)".     </p>

<p>No. of Vacancies: 1     </p>

<p>Qualification required : M.Sc in Bioinformatics with 55% Marks. </p>

<p>Experience (Desirable): Candidate should be well versed with sequencing data analysis,assembly and annotation of whole genome sequence. Experience in transcriptional data analysis is also preferred.</p>

<p>Age Limit : 28 Years   <br />  <br />Stipend : Rs.16000<br />How to apply<br />Interested candidates may appear for the walk-in-interview to be held on 28.09.2015 from 11.00 a.m. in the Red Carpet Room with the following documents self attested copy - (1) Matriculation Certificate in support of your date of birth, (2) Degree/Diploma Certificate, (3) Original reprints of all testimonials regarding educational qualification, (4) No Objection Certificate from the employer if employed, (5) Final Mark Sheet of M.Sc. Examination, (6) One Passport size photograph.</p>

<p>http://www.career.iicb.res.in/Recruitment%20Notice.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2791/ncbi-psi-blast-tutorial</guid>
	<pubDate>Fri, 23 Aug 2013 02:25:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2791/ncbi-psi-blast-tutorial</link>
	<title><![CDATA[NCBI PSI-BLAST Tutorial]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/T3kHEieyylk" frameborder="0" allowfullscreen></iframe>http:--www.biotechnology.jhu.edu-
Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the
Basic Local Alignment Search tool and will protein and DNA sequences that
are related to a sequence that the user provides.]]></description>
	
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24704/2-positions-on-the-evolutionary-analysis-of-biological-sequences-in-montpellier-france</guid>
  <pubDate>Mon, 28 Sep 2015 08:25:48 -0500</pubDate>
  <link></link>
  <title><![CDATA[2 positions on the evolutionary analysis of biological sequences in Montpellier - France]]></title>
  <description><![CDATA[
<p>The Methods and Algorithms for Bioinformatics (MAB) team at the LIRMM (computer science, robotics and microelectronics laboratory at the CNRS &amp; University of Montpellier, France) is looking for talented individuals to fill two postdoctoral positions.  We are seeking candidates with a strong background in computational evolutionary biology. The positions will start by the end of 2015.<br /> <br />The first of the positions (duration: 18-24 months), associated with the European VIROGENESIS project (http://www.kuleuven.be/english/research/EU/p/horizon2020/sc/sc1/Virogenesis), concerns the evolutionary analysis of viral sequences.  Topics include -- but are not limited to -- phylogenetic classification of metagenomic reads and the recombination history of viruses.<br /> <br />The second position (duration: 1 year), associated with the Institute for Computational Biology (IBC, http://www.ibc-montpellier.fr), concerns evolutionary analyses of large-scale genomic data -- including the inference of very large phylogenies, gene/species tree reconciliation, comparative genomics, phylogenetic network inference and verification, phylogeography, the use of phylogenies to study the evolution of characters.<br /> <br />A one thousand year old city, Montpellier is a thriving research community with a multitude of biology and biomedical research centers.  It is the fastest growing city in France where approximately one third of the population are students, and a wonderful location for outdoor activities (kite/wind surfing, sailing, river/sea kayaking, hiking and rock climbing).  The LIRMM is one of the most visible computer science laboratories in France.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/44370/ncbiblast-2141-now-available</guid>
	<pubDate>Wed, 30 Aug 2023 02:36:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/44370/ncbiblast-2141-now-available</link>
	<title><![CDATA[NCBIBLAST+ 2.14.1 now available]]></title>
	<description><![CDATA[<p><a href="https://www.linkedin.com/feed/hashtag/?keywords=ncbiblast&amp;highlightedUpdateUrns=urn%3Ali%3Aactivity%3A7101231946264924160">#NCBIBLAST</a><span>+ 2.14.1 now available with improved documentation, faster and more reliable database downloads, and some bug fixes.&nbsp;</span></p><p>Check out the changes they made.</p><p>They added the&nbsp;<code><span>cleanup-blastdb-volumes.py</span></code>&nbsp;script to remove unused BLAST database volumes. Read the documentation&nbsp;<a href="https://www.ncbi.nlm.nih.gov/books/NBK592857/">here</a>.</p><p>They also switched the protocol from&nbsp;<code><span>ftp</span></code>&nbsp;to&nbsp;<code><span>https</span></code>&nbsp;to access BLAST databases for increased performance and reliability when downloading data from the NCBI with the&nbsp;<code><span>update_blastdb.pl</span></code>&nbsp;script.</p><p>And fixed a few bugs related to downloading data from the NCBI, and&nbsp;<code><span>mt_mode</span></code>&nbsp;crashing&nbsp;<code><span>blastn</span></code>&nbsp;and&nbsp;<code><span>blastx</span></code>.</p><p>Check out the&nbsp;<a href="https://www.ncbi.nlm.nih.gov/books/NBK131777/">release notes</a>.</p><p>Download&nbsp;<a href="https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.14.1/">BLAST+ 2.14.1</a></p><p>Questions or comments? Please write the&nbsp;<a href="https://support.nlm.nih.gov/support/create-case/">BLAST help desk</a>.</p><p><span><span>More info and download:</span>&nbsp;https://blast.ncbi.nlm.nih.gov/doc/blast-news/2023-BLAST-News.html</span></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25307/srfjrf-bioinformatics-at-iari</guid>
  <pubDate>Sun, 29 Nov 2015 03:00:44 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF/JRF Bioinformatics at IARI]]></title>
  <description><![CDATA[
<p>Agricultural Knowledge Management Unit</p>

<p>ICAR-INDIAN AGRICULTURAL RESEARCH INSTITUTE</p>

<p>L.B.S Building, Pusa Campus,</p>

<p>New Delhi-110012</p>

<p>Walk-in-Interview: 18th December 2015</p>

<p>DBT funded project: Distributed Information Centre under BTISnet (PI: Dr. A.K.Mishra)</p>

<p>Senior Research Fellow Two</p>

<p>    Rs 28000/- + HRA</p>

<p>    i) Master’s degree in Bioinformatics or Computer Science+ NET qualification and two years research experience, or</p>

<p>    ii) M. Tech degree in Bioinformatics or Computer Science /Engineering with two years research experience Efficiency to handle agricultural databases and bioinformatics tool development</p>

<p>#Junior Research Fellow</p>

<p>    Rs. 25000/- + HRA</p>

<p>    i) Master’s degree in Bioinformatics or Computer Science + NET qualification, or</p>

<p>    ii) M. Tech degree in Bioinformatics or Computer Science/Engineering Efficiency to handle agricultural databases and bioinformatics tool development</p>

<p>Traineeship Two</p>

<p>    Rs. 8000/- consolidated</p>

<p>    M.Sc./M. Tech (Bioinformatics) with 60 % marks from a recognized University</p>

<p>Studentship Four</p>

<p>    Rs. 8000/- consolidated</p>

<p>    Final year M.Sc./ M.Tech (Bioinformatics) Students from a recognized University</p>

<p>* M. Tech with Four Years Bachelor’s degree followed by Master’s degree</p>

<p># In case suitable person is not found for SRF position, it may be filled at the JRF level The interview will be held on 18 th December 2015 at 10:00 AM at AKMU, LBS Building, IARI, Pusa Campus, New Delhi-110012. Terms and Conditions:  Maximum age limit is 35 years for all positions. Age relaxation of 5 yrs for SC/ST/OBC and woman candidates will be given.  The above post is purely temporary and is co-terminus with the project. The candidate shall not claim for regular appointment.  No TA/DA will be paid for attending the interview.  Bring self attested copies and originals of all certificates ( class 10th )onwards along with biodata in the attached format, proof of date of birth, one passport size photo, NOC from present employer, if any  Canvassing in any form will disqualify the candidate. </p>

<p>Reporting time for interview: 9.30-10.00 AM at AKMU, IARI, New Delhi -110 012</p>

<p>Advertisement:</p>

<p>www.iari.res.in/files/SRF_JRF_Akkmu-27112015-20151127-124003.pdf</p>
]]></description>
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