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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26629?offset=1380</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2882/phylogenetics</guid>
	<pubDate>Fri, 23 Aug 2013 03:53:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2882/phylogenetics</link>
	<title><![CDATA[Phylogenetics]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/fQwI90bkJl4" frameborder="0" allowfullscreen></iframe>006 - Phylogenetics

Paul Andersen discusses the specifics of phylogenetics.  The evolutionary relationships of organisms are discovered through both morphological and molecular data.  A specific type of phylogenetic tree, the cladogram, is also covered.

Intro Music Atribution
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Artist: CosmicD
Link to sound: http://www.freesound.org/people/CosmicD/sounds/72556/
Creative Commons Atribution License]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/11735/search-shell-command-history</guid>
	<pubDate>Thu, 12 Jun 2014 17:43:34 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/11735/search-shell-command-history</link>
	<title><![CDATA[Search Shell Command History]]></title>
	<description><![CDATA[<p>We use couple of hundreads of command in daily basis. Most of them are actually repeated several time. The question remain open how do I search old command history under bash shell and modify or reuse it? <br /><br />Now a days almost all modern shell allows you to search command history if enabled by user. Use history command to display the history list with line numbers. Lines listed with with a * have been modified by user.</p><p><br /><strong>Shell history search command</strong><br /><br />Type history at a shell prompt:<br />$ history</p><p>It will display the list of all used commandline history with an serial number.<br /><br />To search particular command, enter:<br />$ history | grep command-name<br />$ history | egrep -i 'scp|ssh|ftp'<br />Emacs Line-Edit Mode Command History Searching<br /><br />To get previous command containing string, hit [CTRL]+[r] followed by search string:<br /><br />(reverse-i-search): <br /><br />To get previous command, hit [CTRL]+[p]. You can also use up arrow key.<br /><br />CTRL-p<br /><br />To get next command, hit [CTRL]+[n]. You can also use down arrow key.<br /><br />CTRL-n<br /><br /></p><p><strong>fc command</strong></p><p>Apart from hostory command there are fc command to extract the command from history. The fc stands for either "find command" or "fix command.</p><p>For example list last 10 command, enter:<br />$ fc -l 10<br />To list commands 130 through 150, enter:<br />$ fc -l 130 150<br />To list all commands since the last command beginning with ssh, enter:<br />$ fc -l ssh<br />You can edit commands 1 through 5 using vi text editor, enter:<br />$ fc -e vi 1 5</p><p><strong>Delete command history</strong><br /><br />The -c option causes the history list to be cleared by deleting all of the entries:<br />$ history -c</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/11609/bioinformatician%E2%80%99s-pocket-reference</guid>
	<pubDate>Sun, 08 Jun 2014 09:56:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/11609/bioinformatician%E2%80%99s-pocket-reference</link>
	<title><![CDATA[Bioinformatician’s Pocket Reference !!]]></title>
	<description><![CDATA[<p><span>It is amusing how brain of bioinformaticians work! Learning a new programming language for days feels so much of fun that making 5 minute discussion with neighbours (unless under special circumstances!) in our own mother-tongue. Today every bioinformatician keeps more than few languages and core IT toolkits on their plate. It has become mandatory to be able to mould different code snippets to build our own custom workflows, and thus keeping syntax at our fingertips has become essential.Although Google is best way to get syntax problem solved, it is not a bad idea to keep reference sheets is our smartphones or stick out some printed sheets on the back of your door, in the old fashion way!!</span></p><p>Address of the bookmark: <a href="http://infoplatter.wordpress.com/2014/04/06/bioinformaticians-pocket-reference/" rel="nofollow">http://infoplatter.wordpress.com/2014/04/06/bioinformaticians-pocket-reference/</a></p>]]></description>
	<dc:creator>RAJESH DETROJA</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/38418/charles-swanton-lab</guid>
  <pubDate>Tue, 11 Dec 2018 08:09:22 -0600</pubDate>
  <link></link>
  <title><![CDATA[CHARLES SWANTON LAB]]></title>
  <description><![CDATA[
<p>They are using the latest DNA sequencing technology to read the genetic makeup of cancer cells within tumours in ever greater detail, teasing out patterns of evolution (evolutionary rule books), cancer heterogeneity and working out what changes have happened as a tumour evolves. We’re also investigating the processes that cause mutations and accelerate tumour evolution and working out how they might be stopped. And we are running evolutionary clinical trials with immune and targeted therapies to bring the benefits of our work to patients as quickly as possible.</p>

<p>https://www.crick.ac.uk/research/labs/charles-swanton</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12218/assistant-professor-in-medical-bioinformatics</guid>
  <pubDate>Tue, 24 Jun 2014 01:46:36 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor in Medical Bioinformatics]]></title>
  <description><![CDATA[
<p>Advt. No : ME-I/A-IV/03/14<br />No.of Posts:01 (SC)<br />Pay Scale:<br />Pay Band of Rs.15600-39100 + Rs.6000/- GP +NPA @ 25% of Basic Pay +Learning Resource Allowance @ Rs.20,000/-P.A.+ Conveyance Allowance @ Rs. 1650/-P.M.+ Academic Allowance @ Rs.2500/- P.M. and other admissible allowances.<br />Qualifications:<br />Area of Specialization:-<br />Bioinformatics/Computational/Biology/Genomics/ Proteomics/ Structural Biology<br />1. Postgraduate qualification, e.g. Master’s Degree in Biotechnology/Bioinformatics/ Biophysics.<br />2. A Doctorate Degree of recognized University/Institute in a basic or allied Medical Science subject e.g. Medical Biotechnology/Biophysics. Bioinformatics/X-ray Crystallography/<br />Immunology/Structural Biology etc<br />Experience:<br />1.Minimum three years teaching and/or research experience in a recognized medical/research Institution in an allied medical subject after obtaining doctorate degree and preferably in Medical<br />Molecular Biology/ Biophysics/Structural Biology/Genomics and Clinical Proteomics/Computational Biology.<br />2. Minimum two publication with atleast one in international journal and atleast one as first author<br />Desirable:-<br />Consistently excellent scholastic/academic record, demonstrated ability to write grant proposal/(s) successfully, Post Doctoral training in a frontier area of medical Bioinformatics Research and of direct relevance to clinical diagnosis or patient care (preferably from a recognized top-ranking medical institution abroad)<br />Send your applications to O/O, Deputy Registrar, Recruitment &amp; Establishment Cell, University of Health Sciences, Rohtak by 08.7.2014<br />For more details,please visit website: http://pgimsrohtak.nic.in/2014%20AP%20Advt.pdf<br />Last Apply Date: 08 Jul 2014</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/43762/vicoso-group</guid>
  <pubDate>Wed, 02 Feb 2022 02:51:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[Vicoso group]]></title>
  <description><![CDATA[
<p>The Vicoso group investigates how sex chromosomes evolve over time, and what biological forces are driving their patterns of differentiation.</p>

<p>The Vicoso group is interested in understanding several aspects of the biology of sex chromosomes, and the evolutionary processes that shape their peculiar features. By combining the use of next-generation sequencing technologies with studies in several model and non-model organisms, they can address a variety of standing questions, such as: Why do some Y chromosomes degenerate while others remain homomorphic, and how does this relate to the extent of sexual dimorphism of the species? What forces drive some species to acquire global dosage compensation of the X, while others only compensate specific genes? What are the frequency and molecular dynamics of sex-chromosome turnover?</p>

<p>More at https://ist.ac.at/en/research/vicoso-group/<br />http://pub.ist.ac.at/~bvicoso/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12582/postdoc-position-at-centre-mediterraneen-de-medecine-moleculaire</guid>
  <pubDate>Sun, 06 Jul 2014 11:23:06 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoc position at Centre Méditerranéen de Médecine Moléculaire]]></title>
  <description><![CDATA[
<p>The research group of Dr. Michele Trabucchi at the Centre Méditerranéen de Médecine Moléculaire (C3M) at INSERM U1065 (University of Nice Sophia-Antipolis, France) is seeking candidates for a Postdoctoral fellow position to start on October 2014 for 3 years funded by FRM (Fondation pour la Recherche Médicale).<br />The broad interest of the lab is in understanding the expression control and function of small RNAs in activated myeloid cells (visit our webpage to check research interests and publications of the group : http://www.unice.fr/c3m/EN/Equipe10.html ). </p>

<p>The work will focus on the functional studies of small RNAs by using next-generation sequencing approaches.<br /> <br />Candidates should hold a Ph.D. degree and have strong background in bioinformatics.<br />The University of Nice Sophia-Antipolis provides a wide range of facilities and training essential for biomedical research.<br />Interested applicants should send a PDF with a cover letter stating research interests and qualifications, an updated CV, a summary of previous research experience and contact information for two references to Michele Trabucchi ( mtrabucchi@unice.fr )</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/44679/rennison-lab</guid>
  <pubDate>Sat, 26 Oct 2024 15:10:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Rennison Lab !]]></title>
  <description><![CDATA[
<p>Welcome to the Rennison lab in the School of Biological Sciences at the University of California San Diego. We are a group interested in the evolution and maintenance of biodiversity. We study the processes related to biodiversity using methods from the fields of evolution, ecology, population genomics, and theory. </p>

<p>More at https://rennisonlab.com/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/12870/nuclear-dynamics-lab</guid>
  <pubDate>Thu, 17 Jul 2014 15:03:27 -0500</pubDate>
  <link></link>
  <title><![CDATA[Nuclear Dynamics Lab]]></title>
  <description><![CDATA[
<p>Lab focus is to elucidate fundamental principles, new mechanisms, machineries and emergent properties that are involved in maintaining the genome and gene expression programmes for improvements in lifelong health and well-being for all.</p>

<p>More at http://www.babraham.ac.uk/our-research/nuclear-dynamics/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/45235/the-sweet-side-of-human-evolution-did-sugar-help-build-the-human-brain</guid>
	<pubDate>Mon, 17 Aug 2026 01:47:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/45235/the-sweet-side-of-human-evolution-did-sugar-help-build-the-human-brain</link>
	<title><![CDATA[The Sweet Side of Human Evolution: Did Sugar Help Build the Human Brain?]]></title>
	<description><![CDATA[<p>For a long time, people have focused on meat when talking about human evolution. The common idea is that our ancestors ate more animal foods, which gave them lots of energy and nutrients, helping their brains grow bigger and more demanding than those of other primates.</p><p>A new study in Science offers a different and surprisingly sweet perspective. Researchers Jennie Brand-Miller, Karen Hardy, David Raubenheimer, and Les Copeland suggest that sugars from fruits and honey, and later starch from cooked plants, may have been key in helping the human brain evolve.</p><p><strong>The brain&rsquo;s carbohydrate problem</strong></p><p>The human brain uses a lot of energy. Even though it is only about 2% of an adult&rsquo;s body weight, it takes up a large share of the body&rsquo;s resting energy, mainly using glucose as fuel. Over millions of years, as our ancestors&rsquo; brains grew from about 300 grams in Australopithecus afarensis to around 1,500 grams in modern humans, the need for easy-to-access glucose would have gone up a lot.</p><p>The researchers, therefore, asked a simple question: where did all that glucose come from?</p><p>Their analysis suggests that early hominins may have gotten much of their glucose from naturally sweet foods. Fruit and honey could give them easy access to sugars before they learned to digest cooked starch well. The study&rsquo;s models show that sugars may have made up a big part of their diet.</p><p>From fruit and honey to cooked starch</p><p>The story did not end with fruit.</p><p>The researchers suggest that humans shifted from eating sweet foods to eating cooked starchy foods. Once people learned to control fire and process food, cooking made starchy plants much easier to digest and turned them into a key source of glucose.</p><p>From this perspective, new ways of preparing food, like pounding, processing, and cooking, were not just about making meals softer or tastier. These changes may have given our ancestors access to much more carbohydrate energy.</p><p>This gives us a more detailed view of how the human diet evolved. Animal foods were clearly important, but carbohydrates may have been just as important for meeting the high energy needs of a growing brain.</p><p>A different way to think about the human diet</p><p>The study does not claim that our ancestors ate sugar the way we do today. There is a big difference between eating whole fruits or natural honey and eating the highly processed, refined sugars common now.</p><p>Instead, the research points to something bigger. Human evolution may have depended on our ability to find, process, and get energy from many different foods.</p><p>Seasonal fruit, honey, underground plant foods, and later cooked starches could have been important sources of glucose. The researchers think that changes in how available these foods were may have shaped how our ancestors searched for food and even affected human evolution.</p><p>What does this mean today?</p><p>The findings should not be interpreted as a license to eat more refined sugar. Instead, they challenge the simple idea that carbohydrates were less important than meat in human evolution. Our ancestors survived and evolved by exploiting different nutritional opportunities&mdash;and by developing technologies that made previously difficult foods more useful.</p><p>So perhaps the history of the human brain was not written by meat alone. ISo maybe the story of the human brain is not just about meat. It could also be about fruit, honey, roots, grains, and our unique ability to turn plants into energy. sweeter than we once imagined.<br /><br />Read more about it at&nbsp;https://www.science.org/doi/epdf/10.1126/science.aed8437</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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