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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/26852?offset=720</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26382/project-assistant-jrf-at-north-eastern-hill-university</guid>
  <pubDate>Fri, 12 Feb 2016 09:23:01 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant/ JRF at North Eastern Hill University]]></title>
  <description><![CDATA[
<p>Project Assistant/ JRF</p>

<p>Eligibility : ME/M.Tech, Any Graduate, MSc</p>

<p>Location : Shillong</p>

<p>Last Date : 23 Feb 2016</p>

<p>Hiring Process : Face to Face Interview<br />North Eastern Hill University</p>

<p>Project Assistant/ JRF Jobs recruitment in North Eastern Hill University on temporary basis</p>

<p>Project Title : "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India"</p>

<p>Project Assistant</p>

<p>No. of Post : 01</p>

<p>Qualifications : Graduation</p>

<p>Desirable : Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples.</p>

<p>JRF</p>

<p>No. of Post : 01</p>

<p>Qualifications : M.Tech/M.Sc in Life Sciences/Botany/Biotechnology/ Bioinformatics;</p>

<p>Desirable : Aptitude for Bioinformatics and Computer Programming/ Next generation sequencing data analysis<br />How to apply</p>

<p>The applications through email bicnehu@gmail.com or post must reach the Dr. Devendra Kumar Biswal, Co-Principal Investigator (Co-PI) within 15 days from the date of publication of this advertisement.</p>

<p>More at http://www.nehu.ac.in/Advertisements/projectVacancy.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide</guid>
	<pubDate>Thu, 18 Feb 2016 04:50:51 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide</link>
	<title><![CDATA[Advanced Bash-Scripting Guide]]></title>
	<description><![CDATA[<p>This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced level of instruction <em>. . . all the while sneaking in little nuggets of <span>UNIX</span>&reg; wisdom and lore</em>. It serves as a textbook, a manual for self-study, and as a reference and source of knowledge on shell scripting techniques. The exercises and heavily-commented examples invite active reader participation, under the premise that <tt><strong>the only way to really learn scripting is to write scripts</strong></tt>.</p>
<p>This book is suitable for classroom use as a general introduction to programming concepts.</p>
<p>More at http://tldp.org/LDP/abs/html/</p><p>Address of the bookmark: <a href="http://tldp.org/LDP/abs/html/" rel="nofollow">http://tldp.org/LDP/abs/html/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26438/scientist-at-regional-medical-research-centre-icmr-rmrc-port-blair</guid>
  <pubDate>Mon, 22 Feb 2016 04:38:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist at Regional Medical Research Centre (ICMR), RMRC, Port Blair]]></title>
  <description><![CDATA[
<p>Scientist</p>

<p>Eligibility : MSc, M Phil / Phd, BE/B.Tech</p>

<p>Location : Delhi</p>

<p>Last Date : 08 Mar 2016</p>

<p>Hiring Process : Walk - In<br />Regional Medical Research Centre - </p>

<p>Notification Order No.1-51/Proj/RMRC/PB/</p>

<p>Scientist – II (Post Code: BIC-II) job position in Regional Medical Research Centre (ICMR)</p>

<p>Essential Qualification: 1 st class Master’s degree in Bioinformatics / Computational Biology.  B.E / B.Tech (Bioinformatics / Computer Science / Biotechnology) OR 2nd Class M.Sc. with Ph.D. in Bioinformatics / Computational Biology / Life Science.</p>

<p>Desirable Qualification:  Post-doctoral research experience in Bioinformatics / Computational Biology / Computer Science / Life Science at a recognized institution.  Experience in handling and analyzing sequencing data.  Experience in scripting languages (PERL/PYTHON) etc./ Statistical software.  Experience in developing research projects.</p>

<p>Number of Post: 1 UR</p>

<p>Place of Posting: RMRC, Port Blair </p>

<p>Age Limit: 40 years</p>

<p>Pay Scale : Rs.45,954<br />How to apply</p>

<p>Interested candidates are invited to submit applications along with copies of all the certificates of educational qualifications, date of birth, working experience etc . on the affixing a passport size photograph by Application Format to attend a walk-in interview on 8th March 2016 at 10:30 AM.</p>

<p>More at http://www.icmr.nic.in/icmrnews/port%20blair%20Bioinf%2003-2016.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26562/jrf-at-icgeb</guid>
  <pubDate>Fri, 04 Mar 2016 05:34:42 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF at ICGEB]]></title>
  <description><![CDATA[
<p>Vacancy Notice PU/TS/01-16</p>

<p>JRF jobs in International Centre for Genetic Engineering and Biotechnology</p>

<p>Area of research: Computational analysis of protein-protein interactions and metabolic reconstruction of pathways</p>

<p>Qualification : Suitable candidate must have completed Masters in Computer Science/Physics/Mathematics/Bioinformatics or PG diploma in Bioinformatics with very sound programming skills shown in the form of completed project or paper. Programming Skill required: Java/perl/python or any other scripting language and working knowledge of MySQL. Candidate should have some familiarity with R statistical package.</p>

<p>The salary will be as per the guidelines of DBT/DST, based on qualification and experience.</p>

<p>How to apply</p>

<p>Interested candidates may send application along with CV via email to hemant@icgeb.res.in  (Dr. Hemant Ritturaj Kushwaha) on or before 08/03/2016. Candidates applying through Email must mention “Application for JRF” in their subject line.</p>

<p>More at http://www.icgeb.org/vacancies.html</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27113/picard</guid>
	<pubDate>Fri, 29 Apr 2016 08:21:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27113/picard</link>
	<title><![CDATA[Picard]]></title>
	<description><![CDATA[<p>Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the <a href="http://samtools.github.io/hts-specs/">Hts-specs</a> repository. See especially the <a href="http://samtools.github.io/hts-specs/SAMv1.pdf">SAM specification</a> and the <a href="http://samtools.github.io/hts-specs/VCFv4.3.pdf">VCF specification</a>.</p>
<p>Note that the information on this page is targeted at end-users. For developers, the source code, building instructions and implementation/development resources are available on <a href="https://github.com/broadinstitute/picard">GitHub</a>.</p>
<p>The Picard toolkit is open-source under the <a href="https://tldrlegal.com/license/mit-license">MIT license</a> and free for all uses.</p>
<p>Enjoy!</p><p>Address of the bookmark: <a href="http://broadinstitute.github.io/picard/" rel="nofollow">http://broadinstitute.github.io/picard/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26712/post-doctoral-fellow-jobs-opportunity-in-srm-university</guid>
  <pubDate>Thu, 17 Mar 2016 11:20:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-Doctoral Fellow Jobs opportunity in SRM University]]></title>
  <description><![CDATA[
<p>Post-Doctoral Fellow Jobs opportunity in SRM University</p>

<p>Essential qualification : Ph.D. in Bioinformatics/Biotechnology/Genetics/Computational Biology.Understanding of genomics data and advanced knowledge of Java, and C/C++ as the programming languages and the scripting language like perl and/or Python, SQL is preferred. Experience in High Performance Computing, data architecture, database development is desirable</p>

<p>Fellowship: Rs 35,000 /-<br /> <br />How to apply</p>

<p>Candidates are requested to send their CV, and a brief summary of research experience by e-mail careers.genetics@ktr.srmuniv.ac.in  on or before 30/03/2016.</p>

<p>More at http://www.srmuniv.ac.in/jobs-applications-for-position-of-post-doctoral-fellow</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26823/srf-at-nrcpb-new-deslhi</guid>
  <pubDate>Fri, 25 Mar 2016 04:53:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF at NRCPB, New Deslhi]]></title>
  <description><![CDATA[
<p>NRCPB Recruitment 2016 – Walk in for SRF &amp; Young Professional Posts: National Research Centre on Plant Biotechnology (NRCPB) has announced a notification for the recruitment of Senior Research Fellow &amp; Young Professional Scheme vacancies for the project “NPTC Co-ordinating Cell” on temporary &amp; co-terminus basis. Eligible candidates may walk in interview on 29-03-2016 at 10.00 AM. Other details like age limit, educational qualification, selection process &amp; how to apply are given below…</p>

<p>NRCPB Vacancy Details:<br />Total No.of Posts: 02 <br />Name of the Posts:<br />1. Senior Research Fellow: 01 Post<br />2. Young Professional Scheme: 01 Post</p>

<p>Age Limit: Candidates maximum age should be 35 years. Age relaxation 5 years for SC/ ST/ OBC and women candidates as per ICAR rules.</p>

<p>Educational Qualification: Candidates should posses M.Sc/ M.Tech/ M.C.A. in Molecular Biology/ Biotechnology/ Life Sciences/ Allied Sciences/ Agricultural Sciences/ Computer Science/ Bioinformatics with 1st division or 60% marks or equivalent.</p>

<p>Selection Process: Candidates will be selected based on interview.</p>

<p>How to Apply: Eligible candidates may attend the interview along with four copies of biodata, original certificates, attested photocopies of each of the certificates and an attested copy of recent passport size photograph at NRCPB, LBS Building, Pusa Campus, New Delhi- 110012 on 29-03-2016 at 10.00 AM.</p>

<p>Important Dates:<br />Date &amp; Time of Interview: 29-03-2016 at 10.00 AM.<br />Venue: NRCPB, LBS Building, Pusa Campus, New Delhi-110012.</p>

<p>Read more: http://www.nrcpb.res.in/content/walk-interview-srf-and-yp</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26877/research-fellow-bioinformatics</guid>
  <pubDate>Mon, 04 Apr 2016 05:41:21 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow Bioinformatics]]></title>
  <description><![CDATA[
<p>Research Fellow Bioinformatics<br />Eligibility : BSc(Bio-Tech), MSc(Bio-Tech)<br />Location : Ludhiana<br />Last Date : 19 Apr 2016<br />Hiring Process : Walk - In<br />Punjab Agricultural University</p>

<p>Research Fellow Bioinformatics job opportunities in Punjab Agricultural University<br />Qualification : B.Sc. with minimum OCPA 5.00/10.00 basis or 50% marks. ii. M.Sc. in Biotechnology/ Molecular Biology/Molecular Genetics/Bioinformatics/Genetics/Plant Breeding/Plant Breeding &amp; Genetics with at least 6.50/10.00 or 65% marks. iii. Ph.D. in the relevant field with minimum OCPA 6.50/10.00 or 65% marks<br />Pay Scale : Rs.24000/-<br />Application Fee : A Bank Draft of Rs. 200/- in favour of Comptroller, Punjab Agricultural University, Ludhiana <br /> <br />How to apply<br />Walk in Interview will be held on 26.09.2016 at 11:30 a.m. in the office of the Director, School of Agricultural Biotechnology. No separate information for interview will be sent. No TA/DA will be paid for attending the interview. Candidate Should apply with detailed bio data to this office latest by 19.04.2016</p>

<p>More at http://web.pau.edu/index.php?_act=manageAllBanner&amp;DO=viewAllBanner</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26911/raca-reference-assisted-chromosome-assembly</guid>
	<pubDate>Wed, 06 Apr 2016 09:29:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26911/raca-reference-assisted-chromosome-assembly</link>
	<title><![CDATA[RACA: Reference-Assisted Chromosome Assembly]]></title>
	<description><![CDATA[<p>Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end reads.</p>
<p>http://www.ncbi.nlm.nih.gov/pubmed/23307812</p>
<p>http://bioen-compbio.bioen.illinois.edu/RACA/</p><p>Address of the bookmark: <a href="http://bioen-compbio.bioen.illinois.edu/RACA/" rel="nofollow">http://bioen-compbio.bioen.illinois.edu/RACA/</a></p>]]></description>
	<dc:creator>Priya Singh</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26975/trimmomatic-a-flexible-read-trimming-tool-for-illumina-ngs-data</guid>
	<pubDate>Fri, 15 Apr 2016 05:58:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26975/trimmomatic-a-flexible-read-trimming-tool-for-illumina-ngs-data</link>
	<title><![CDATA[Trimmomatic: A flexible read trimming tool for Illumina NGS data]]></title>
	<description><![CDATA[<h4>Paired End:</h4>
<p><code>java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36</code></p>
<p>This will perform the following:</p>
<ul>
<li>Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa:2:30:10)</li>
<li>Remove leading low quality or N bases (below quality 3) (LEADING:3)</li>
<li>Remove trailing low quality or N bases (below quality 3) (TRAILING:3)</li>
<li>Scan the read with a 4-base wide sliding window, cutting when the average quality per base drops below 15 (SLIDINGWINDOW:4:15)</li>
<li>Drop reads below the 36 bases long (MINLEN:36)</li>
</ul>
<p>More at http://www.usadellab.org/cms/?page=trimmomatic</p><p>Address of the bookmark: <a href="http://www.usadellab.org/cms/?page=trimmomatic" rel="nofollow">http://www.usadellab.org/cms/?page=trimmomatic</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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