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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27076?offset=540</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/26456/the-mills-lab</guid>
  <pubDate>Wed, 24 Feb 2016 16:18:38 -0600</pubDate>
  <link></link>
  <title><![CDATA[The Mills lab]]></title>
  <description><![CDATA[
<p>The laboratory is focused on the discovery and analysis of structural variation (SVs) from genomic sequence data. As part of the 1000 Genomes Project and other endeavors, we have helped produce initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) read-depth analysis, which detects deletions and duplications through analysis of the read depth-of-coverage; (iii) split read analysis, which detects SVs by evaluating gapped sequence alignments; and (iv) sequence assembly, which enables the discovery of novel (non-reference) sequence insertions.</p>

<p>http://millslab.org/research.html</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26543/breakseq2</guid>
	<pubDate>Mon, 29 Feb 2016 17:45:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26543/breakseq2</link>
	<title><![CDATA[BreakSeq2]]></title>
	<description><![CDATA[<p>Ultrafast and accurate nucleotide-resolution analysis of structural variants</p>
<p>More at http://bioinform.github.io/breakseq2/</p>
<p>Download BreakSeq2</p>
<p>Latest version: https://github.com/bioinform/breakseq2/archive/2.2.tar.gz<br><br>For other versions, see "releases". https://github.com/bioinform/breakseq2/releases</p><p>Address of the bookmark: <a href="http://bioinform.github.io/breakseq2/" rel="nofollow">http://bioinform.github.io/breakseq2/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</guid>
	<pubDate>Mon, 07 Mar 2016 05:18:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</link>
	<title><![CDATA[Efficient genome searching with Biostrings and the BSgenome data package]]></title>
	<description><![CDATA[<p>Address of the bookmark: <a href="https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf" rel="nofollow">https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf</a></p>]]></description>
	<dc:creator>Aasha</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26712/post-doctoral-fellow-jobs-opportunity-in-srm-university</guid>
  <pubDate>Thu, 17 Mar 2016 11:20:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-Doctoral Fellow Jobs opportunity in SRM University]]></title>
  <description><![CDATA[
<p>Post-Doctoral Fellow Jobs opportunity in SRM University</p>

<p>Essential qualification : Ph.D. in Bioinformatics/Biotechnology/Genetics/Computational Biology.Understanding of genomics data and advanced knowledge of Java, and C/C++ as the programming languages and the scripting language like perl and/or Python, SQL is preferred. Experience in High Performance Computing, data architecture, database development is desirable</p>

<p>Fellowship: Rs 35,000 /-<br /> <br />How to apply</p>

<p>Candidates are requested to send their CV, and a brief summary of research experience by e-mail careers.genetics@ktr.srmuniv.ac.in  on or before 30/03/2016.</p>

<p>More at http://www.srmuniv.ac.in/jobs-applications-for-position-of-post-doctoral-fellow</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26850/wellcome-trustdbt-india-alliance-margdarshi-fellowships-2016</guid>
  <pubDate>Tue, 29 Mar 2016 17:47:39 -0500</pubDate>
  <link></link>
  <title><![CDATA[Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016]]></title>
  <description><![CDATA[
<p>The Wellcome Trust/DBT India Alliance invites application for the Margdarshi Fellowship scheme. The scheme provides a unique opportunity for visionary biomedical scientists to lead and nucleate a cutting edge research program in India in collaboration with Indian Host Institution(s). The potential candidates and the Host Institution are encouraged to make a synergistic effort towards establishing a centre of excellence that aims to improve the existing scientific breadth and utilizes the experience of the lead applicant for developing new research platforms. In addition to this, under this programme two eligible Indian institutions may also come together towards creating a new program under the leadership of a visionary scientist.</p>

<p>Eligibility</p>

<p>Interested applicants must</p>

<p>Have around 10 years of experience as independent investigator, and can be of any age or nationality<br />Have Sponsor(s) at not-for-profit Host Institution(s) in India, who is willing to extend the desired commitment and resources for program implementation<br />Provisions</p>

<p>The 5 year Fellowship provides</p>

<p>Generous personal support for the Fellow<br />Salary support for personnel, which may include Assistant Professors<br />Large quantum of funds for equipment, animals and consumables<br />Funds to attend scientific gatherings, for collaborative visits and to organize meetings<br />Overheads for the Host Institution<br />Process</p>

<p>A joint online application is invited from the Applicant and the Sponsor(s). The details of the scheme and the funding mechanism are available on the website at http://wellcomedbt.org/fellowshiptype/margdarshi-fellowships.</p>

<p>Application form can be accessed at https://fellowships.wellcomedbt.org/Login.aspx</p>

<p>Sponsored applications due by 2 May 2016</p>

<p>Send your inquiries to margdarshi@wellcomedbt.org</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26927/phylographer-graph-visualization-tool</guid>
	<pubDate>Wed, 06 Apr 2016 19:06:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26927/phylographer-graph-visualization-tool</link>
	<title><![CDATA[PhyloGrapher - Graph Visualization Tool]]></title>
	<description><![CDATA[<p><strong>PhyloGrapher</strong><span>&nbsp;is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).</span><strong>PhyloGrapher</strong><span>&nbsp;is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;to visualize any type of relations between elements.&nbsp;</span></p>
<p><span>More at&nbsp;http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html</span></p><p>Address of the bookmark: <a href="http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html" rel="nofollow">http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/31523/research-associate-bioinformatics-recruitment-in-national-bureau-of-plant-genetic-resources</guid>
  <pubDate>Fri, 10 Mar 2017 06:50:51 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics recruitment in National Bureau of Plant Genetic Resources]]></title>
  <description><![CDATA[
<p>Name of Project  : Indo-UK Centre for improvement of Nitrogen use efficiency in wheat Dr. Soma S. Marla, Pr. Scientist (Bioinformatics), Division of Genomic Resources, ICAR, NBPGR, ND. </p>

<p>No. of Post : 01</p>

<p>Qualification : A doctoral (Ph.D). Degree in Bioinformatics OR 1. Masters degree in Bioinformatics or Computer Sciences having 1st division or 60% marks or equivalent overall grade point with at least two years of research experience as evidenced from Fellowship/ Associate ship. 2. NET or equivalent national level examination qualification is essential for the candidates with 3+2 years (B.Sc.+ M.Sc) pattern. Desirable: Demonstrated experience &amp; skills in database design, management, UNIX OS, HPC environment inbased NGS data analysis. Experience substantiated by publications of high quality will be preferred.</p>

<p>Emoluments : Rs. 40,000 (Ph.D)/ Rs + 30 % HRA; 38,000 (Masters) Degree + 30 % HRA.<br />Hiring Process : Walk - In<br />Job Role: Research/JRF/SRF</p>

<p>Candidates should appear by 10.00 AM on 16.03.2016 for registration with relevant documents in the room B4, Bioinformatics Lab, ICAR.NBPGR. old campus, Inderpuri, New Delhi.</p>

<p>The candidates who wish to attend the walk-in interview are requested to bring with them five copies of the CV (one copy with photograph) as per the format given below. Also, the candidates should bring the original documents such as DOB, degree certificates, marks sheets, publications, thesis, experience certificate etc. for verification.</p>

<p>http://www.nbpgr.ernet.in/Downloadfile.aspx?EntryId=7284</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27225/painless-package-development-for-r</guid>
	<pubDate>Tue, 03 May 2016 05:31:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27225/painless-package-development-for-r</link>
	<title><![CDATA[Painless package development for R]]></title>
	<description><![CDATA[<p>Devtools makes package development a breeze: it works with R&rsquo;s existing conventions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you&rsquo;re writing a significant amount of code.</p>
<p>Before you get started be sure to check out:</p>
<ul>
<li><a href="https://groups.google.com/forum/#%21forum/rdevtools" title="Google devtools Group">devtools Google Group &ndash;&nbsp;https://groups.google.com/forum/#!forum/rdevtools</a></li>
<li><a href="http://adv-r.had.co.nz/" title="Hadley W Online Book">book on &ldquo;Advanced R programming&rdquo; &ndash;&nbsp;http://adv-r.had.co.nz/</a></li>
<li><a href="https://github.com/hadley/devtools" title="devtools GitHub">GitHub repository &ndash;&nbsp;https://github.com/hadley/devtools</a></li>
</ul>
<h3 id="getting_started">&nbsp;</h3><p>Address of the bookmark: <a href="https://www.rstudio.com/products/rpackages/devtools/" rel="nofollow">https://www.rstudio.com/products/rpackages/devtools/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27238/slurm</guid>
	<pubDate>Wed, 04 May 2016 05:13:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27238/slurm</link>
	<title><![CDATA[SLURM]]></title>
	<description><![CDATA[<p><a href="http://www.schedmd.com/">SLURM</a> workload manager software, a free open-source workload manager designed specifically to satisfy the demanding needs of high performance computing.</p>
<p>This page is a <em>HOWTO</em> guide for setting up a <a href="http://www.schedmd.com/">SLURM</a> installation, currently focused on a CentOS 7 Linux OS. Please send feedback to Ole.H.Nielsen /at/ fysik.dtu.dk.</p>
<p>See the <a href="http://www.schedmd.com/">SLURM</a> homepage (also <a href="https://computing.llnl.gov/linux/slurm/">https://computing.llnl.gov/linux/slurm/</a>).</p><p>Address of the bookmark: <a href="https://wiki.fysik.dtu.dk/niflheim/SLURM" rel="nofollow">https://wiki.fysik.dtu.dk/niflheim/SLURM</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27290/scientists-post-at-monsanto</guid>
  <pubDate>Wed, 11 May 2016 07:58:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[Scientists post at Monsanto]]></title>
  <description><![CDATA[
<p>Sustainable agriculture is at the core of Monsanto. We develop technologies that enable farmers to produce more crops while conserving natural resources. Monsanto scientists are conducting research and development (R&amp;D) to revolutionize plant breeding and biotechnology.</p>

<p>Monsanto is seeking a very talented Genomics Scientistto become an integral member of our Global Pipeline Analytics team with a focus on quantitative genetics. The ideal candidate will have familiarity with modeling and analysis of genetic data sets using a variety of statistical techniques.</p>

<p>Major Responsibilities:<br />- Provide guidance on experimental design for genomic-related experiments<br />- Familiarity with analysis of the following methods: GWS, QTL, eQTL, RNA-Seq<br />- Provide written and oral presentations of methods, results, conclusions, and recommendations to peer and management groups.<br />- Ensure timely delivery and clear communication of results<br />- Develop strong and successful collaborations among various Monsanto enabling teams.</p>

<p>Required Skills:</p>

<p>- PhD degree in Statistics, Biostatistics, Statistical Genetics, Quantitative Genetics, Breeding, Bioinformatics or a related field with 2 years of experience<br />- Working knowledge and experience with one of the following quantitative languages:R, Python, Perl, SAS<br />- Background in Windows and Linux operating systems<br />- Very strong problem solving skills will be required to work well as a member of a dynamic team<br />- Strong verbal and written communication skills.<br />- Demonstrated ability to deliver timely results and be results oriented.<br />- Extensive knowledge of quantitative genetics and experimental design.&nbsp;<br />- Demonstrated track record of solving challenging and complex problems.</p>

<p>Desired Skills/Experience:</p>

<p>- Excellent communication skills, with the ability to summarize complex concepts in language understandable by scientists from a variety of disciplines.<br />- Experience in agronomy and/or plant breeding in vegetables or row crops.</p>

<p>Please apply to<br />https://jobs.monsanto.com/job/st-louis/genomics-scientist/769/2081771</p>
]]></description>
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