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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27090?offset=1000</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42359/dnasp-dna-sequence-polymorphism-is-a-software-package-for-the-analysis-of-dna-polymorphisms</guid>
	<pubDate>Wed, 25 Nov 2020 19:51:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42359/dnasp-dna-sequence-polymorphism-is-a-software-package-for-the-analysis-of-dna-polymorphisms</link>
	<title><![CDATA[DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms]]></title>
	<description><![CDATA[<p><span>DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some assembler RAD-seq software). DnaSP can estimate several measures of DNA sequence variation within and between populations in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkage disequilibrium, recombination, gene flow and gene conversion parameters.</span></p><p>Address of the bookmark: <a href="http://www.ub.edu/dnasp/" rel="nofollow">http://www.ub.edu/dnasp/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/20677/postdoctoral-researcher-at-department-of-biotechnology-catholic-university-of-daegu-kyungsan-kyungbuk-south-korea</guid>
  <pubDate>Thu, 29 Jan 2015 12:11:16 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Researcher at Department of Biotechnology, Catholic University of Daegu, Kyungsan, Kyungbuk, South Korea.]]></title>
  <description><![CDATA[
<p>Applications are invited from Indian nationals for a Post Doctoral position at Molecular Medical Laboratory, Department of Biotechnology, Catholic University of Daegu, Kyungsan, Kyungbuk, South Korea.</p>

<p>Qualification required: PhD in Life Sciences/ Molecular Biology/ Bioinformatics or related discipline.</p>

<p>Desirable Qualification:</p>

<p>1. Candidates having experience in molecular biology techniques and must be well versed with bioinformatics tool or expert in relevant fields will be preferred.<br />2. The candidate should have good communication skill, knowledge about designing experiments and analyzing data.<br />3. Sense of initiative, autonomy, organization and thoroughness, good relation qualities.<br />Remuneration: 2000USD per month.</p>

<p>Last date of submitting the complete applications furnishing Bio-data is 10th February, 2015.</p>

<p>Interested candidates should send their resume including all personal as well as academic details to the principal investigator Prof Seung-Won Park (email:microsw@cu.ac.kr)</p>

<p>The shortlisted candidates will be intimated within February 2015.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44476/omark-software-for-proteome-protein-coding-gene-repertoire-quality-assessment</guid>
	<pubDate>Wed, 21 Feb 2024 15:01:20 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44476/omark-software-for-proteome-protein-coding-gene-repertoire-quality-assessment</link>
	<title><![CDATA[OMArk: software for proteome (protein-coding gene repertoire) quality assessment]]></title>
	<description><![CDATA[<p><span>OMArk is a software for proteome (protein-coding gene repertoire) quality assessment. It provides measures of proteome completeness, characterizes the consistency of all protein coding genes with regard to their homologs, and identifies the presence of contamination from other species. OMArk relies on the OMA orthology database, from which it exploits orthology relationships, and on the OMAmer software for fast placement of all proteins into gene families.</span></p><p>Address of the bookmark: <a href="https://github.com/DessimozLab/OMArk" rel="nofollow">https://github.com/DessimozLab/OMArk</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22438/research-associate-nbfgr-lucknow-uttar-pradesh</guid>
  <pubDate>Thu, 28 May 2015 19:37:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate NBFGR - Lucknow, Uttar Pradesh]]></title>
  <description><![CDATA[
<p>NBFGR, Lucknow is recruiting Bioinformatics experts for the post of Research Associate</p>

<p>Name of Position : Research Associate<br />No of Post : One<br />Desired candidate Profile : Candidate should be PhD in Bioinformatics or equivalent or Post-Graduation Bioinformatics with 1st division or 60% marks. Preference will be given to candidates having experience in server management<br />Remuneration : Rs 24000/- pm + HRA for PhD holders<br />Age requirement- 40 years (5 years relaxation for SC/ST/women candidates and 3 years for OBC candidates) as on date of interview.</p>

<p>How to apply- Interested candidates can walk -in-interview on 30.05.2015 at 10:00 hrs at National Bureau of Fish Genetic Resources, Lucknow.</p>

<p>Ref- http://www.nbfgr.res.in/PDF/News%20&amp;%20Events/Walk%20in%20interview%20on%2030.05.2015.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</guid>
	<pubDate>Thu, 18 May 2017 05:31:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</link>
	<title><![CDATA[maf2synteny]]></title>
	<description><![CDATA[<p>A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat)</p>
<p>This tool is a standalone version of Ragout module [<a href="http://fenderglass.github./Ragout">http://fenderglass.github./Ragout</a>]</p><p>Address of the bookmark: <a href="https://github.com/fenderglass/maf2synteny" rel="nofollow">https://github.com/fenderglass/maf2synteny</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21021/ra-bioinformatics-at-iiser</guid>
  <pubDate>Fri, 06 Feb 2015 04:05:49 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at IISER]]></title>
  <description><![CDATA[
<p>Advertisement: Research Position in Computational Biology in the group of Shree P. Pandey Positions available in the area of NGS data analysis, bioinformatics, plant genomics Project Description: Projects involves high throughput analysis of data mostly generated by massively parallel sequencing (RNA-Seq and small-RNA-Seq), microarrays and related platforms.</p>

<p>We are looking for highly motivated and bright individuals interested in high-throughput cutting-edge data analyses methods in genomics (computational positions). Available positions:</p>

<p>Applications are invited from suitable candidates in both, the Max Planck India Partner Program and the CRP Wheat Program for openings at the levels:</p>

<p>Minimum qualification Salary scale (per month)</p>

<p>Project assistant Bachelor’s / Master’s Rs. 10000 / Rs. 14000</p>

<p>Project fellow (junior data analyst) Masters + research experience Rs. 16000</p>

<p>Research fellow (senior data analyst) Masters + adequate research experience/desirable skill sets Rs. 22000</p>

<p>Research Associated PhD (&lt;1yr) / &gt; 1 yr experience Rs. 28000 / Rs. 32000</p>

<p>Condition to satisfactory performance, availability of funds and requirements of the project, the positions could be available upto a period of ~2 years (or funding of the project).</p>

<p>Essential qualification: MSc/BTech/MTech/PhD (or other suitable qualification) in discipline related to bioinformatics, computational biology, computer application (or equivalent)/ ‘Advance PostGraduate Diploma in Bioinformatics’. Proficiency in one of the programming languages or statistics (proficient in R for example) is compulsory.</p>

<p>Desirable qualification:</p>

<p>1. Programming experiences in at least one low level language such as C/C++ and one scripting language such as Perl/Python/PHP and knowledge of SQL/MySQL.</p>

<p>2. Substantial experience in the linux or other unix environments.</p>

<p>Application process: Applications should contain CV along with brief description (maximum 1 page) of research conducted (highlighting skills and experience) till now. Applications should be sent by email to Shree P. Pandey, Department of Biological Sciences, IISER-Kolkata, Mohanpur Campus, West Bengal within 2 weeks (Feb 19th 2015). E-mail: sppiiserkol@gmail.com, sppandey@iiserkol.ac.in Brief description of the group: We are an interdisciplinary group focusing on small-RNA (miRNA, siRNA) mediated regulation of signaling and defense. Project equally involve bioinformatics and systems biology (specially microarrays and next-generation sequencing (NGS) data analysis and its use), along with plant molecular biology, genetic engineering, field biology, and analytical plant chemistry for understanding response of plants to biotic stresses. For more details visit: http://www.iiserkol.ac.in/~sppandey/</p>

<p>Advertisement:</p>

<p>www.iiserkol.ac.in/images/iiserk/advertisements/advertisement_7_spp_feb_2015.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35896/phylographer-graph-visualization-tool</guid>
	<pubDate>Wed, 07 Mar 2018 18:11:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35896/phylographer-graph-visualization-tool</link>
	<title><![CDATA[PhyloGrapher - Graph Visualization Tool]]></title>
	<description><![CDATA[<p><strong>PhyloGrapher</strong><span>&nbsp;is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;to visualize any type of relations between elements.&nbsp;</span></p>
<p><span>https://www.youtube.com/watch?v=WgufqYMHCvM</span></p><p>Address of the bookmark: <a href="http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html" rel="nofollow">http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21065/ra-bioinformatics-at-north-eastern-hill-university</guid>
  <pubDate>Sat, 07 Feb 2015 06:06:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at North Eastern Hill University]]></title>
  <description><![CDATA[
<p>Bioinformatics Infrastructure Facility, Department of RDAP, NEHU vacancy of Research Associate</p>

<p>Name of the Post: Research Associate<br />No. of the Post: 01 One<br />Age Limit: Max. 35 years<br />Salary: Rs. 22000/- per month plus HRA</p>

<p>Required Job Profile:<br />Candidate must possess M.Sc. in bioinformatics or biotechnology from recognized university or institute.<br />Desired Job Profile;<br />Candidate having Ph.D. or pursuing Ph.D. in the related subject or equivalent published work in reputed peer reviewed journals or advance PG dipoma in bioinformatics course.</p>

<p>How to apply:<br />Eligible and interested candidates should need to send the bio-data and bring all related documents in original and set of attested copies of the same in the time of interview.</p>

<p>Last date: 16.02.2015<br />Refer to http://www.nehu.ac.in/Advertisements/BIFTuraAdvt_221214.pdf</p>

<p>Summary <br />Employer Address:	Dr.B.K. Mishra Coordinator BIF, RDAP Department, North Eastern Hill University, Tura Campus, Tura, Meghalaya<br />Email:	drbkm1972@yahoo.co.in;birendramishra14@gmail.com<br />URL:	http://www.nehu.ac.in/Advertisements/BIFTuraAdvt_221214.pdf<br />Phone:	03651-223107<br />Required Skills:	not mentioned / required for this post<br />Required Experience:	not mentioned / required for this job post<br />Required Education:	M.Sc. in bioinformatics or biotechnology from recognized university or institute.<br />Job Location:	Tura, Meghalaya, India</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41736/synvisio-an-interactive-multiscale-synteny-visualization-tool-for-mcscanx</guid>
	<pubDate>Sun, 31 May 2020 02:01:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41736/synvisio-an-interactive-multiscale-synteny-visualization-tool-for-mcscanx</link>
	<title><![CDATA[SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.]]></title>
	<description><![CDATA[<p>SynVisio lets you explore the results of&nbsp;<a href="http://chibba.pgml.uga.edu/mcscan2/">McScanX</a>&nbsp;a popular synteny and collinearity detection toolkit and generate publication ready images.</p>
<p>SynVisio requires two files to run:</p>
<ul>
<li>The&nbsp;<strong>simplified gff file</strong>&nbsp;that was used as an input for a McScanX query.</li>
<li>The&nbsp;<strong>collinearity file</strong>&nbsp;generated as an output by McScanX for the same input query.</li>
<li>Optional&nbsp;<strong>track file</strong>&nbsp;in bedgraph format to annotate the generated charts.</li>
</ul>
<p>SynVisio offers different types of visualizations such as&nbsp;<strong>Linear Parallel plots</strong>,&nbsp;<strong>Hive plots</strong>,&nbsp;<strong>Stacked Parallel Plots&nbsp;</strong>and&nbsp;<strong>Dot plots</strong>. Users can configure the type of plots required and then choose the source and the target chromosomes that need to be mapped. Users also have option to download the generated visualizations in publication ready SVG or PNG formats.</p><p>Address of the bookmark: <a href="https://synvisio.github.io/#/" rel="nofollow">https://synvisio.github.io/#/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/21241/pacman</guid>
	<pubDate>Mon, 16 Feb 2015 12:15:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/21241/pacman</link>
	<title><![CDATA[Pacman]]></title>
	<description><![CDATA[<p><span>The pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions. This package is ideally added to .Rprofile to increase workflow by reducing time recalling obscurely named functions, reducing code and integrating functionality of base functions to simultaneously perform multiple actions.<br /><br />Function names in the pacman package follow the format of p_xxx where &lsquo;xxx&rsquo; is the task the function performs. For instance the p_load function allows the user to load one or more packages as a more generic substitute for the library or require functions and if the package isn&rsquo;t available locally it will install it for you.<br /><br /></span></p><p><strong>Installation</strong></p><p><span>To download the development version of pacman:</span></p><p><span>Download the </span><a href="https://github.com/trinker/pacman/zipball/master">zip ball</a><span> or </span><a href="https://github.com/trinker/pacman/tarball/master">tar ball</a><span>, decompress and run </span><code>R CMD INSTALL</code><span> on it, or use th</span><span>e </span><strong>devtools</strong><span> package to install the development version:</span></p><pre title="">## Make sure your current packages are up to date
update.packages()
## devtools is required
devtools::install_github("trinker/pacman")
</pre><p>Note: Windows users need <a href="http://www.murdoch-sutherland.com/Rtools/">Rtools</a> and <a href="http://CRAN.R-project.org/package=devtools">devtools</a> to install this way.</p><p>More at https://github.com/trinker/pacman</p><p>&nbsp;</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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