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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21893/postdoctoral-fellowship-in-bioinformatics-and-evolutionary-genomics</guid>
  <pubDate>Wed, 01 Apr 2015 21:36:42 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics<br />Organization<br />National Human Genome Research Institute, National Institutes of Health<br />http://genome.gov/Staff/Baxevanis<br />Job Location<br />Bethesda, MD<br />Job Description</p>

<p>A postdoctoral training position is currently available in the Computational and Statistical Genomics Branch (CSGB) of the National Human Genome Research Institute (NHGRI). The position is located in the laboratory of Andy Baxevanis, Ph.D., whose research group uses comparative genomics approaches to better-understand the molecular innovations that drove the surge of diversity in early animal evolution. The overarching theme of Dr. Baxevanis’ research program is focused on how non-traditional animal models convey critical insights into human disease research.</p>

<p>Candidates should have or be close to obtaining a Ph.D. or equivalent degree in bioinformatics, computational biology, computer science, molecular biology, or a closely related field. Candidates with a background in evolutionary biology are particularly encouraged to apply. Programming skills and experience in the application of computational methods to genomic data are highly desirable. Applicants must possess good communication skills and be fluent in both spoken and written English. The ability to learn how to use new software and quickly become expert in its use, critical thinking, problem-solving abilities, and the ability to work semi-independently are required.<br />How to Apply</p>

<p>Interested applicants should submit a curriculum vitae, a detailed letter of interest, and the names of three potential referees to Dr. Baxevanis at andy@mail.nih.gov.<br />About Our Organization</p>

<p>The NIH Intramural Research Program is on the Bethesda, Maryland campus and offers a wide array of training opportunities for scientists early in their careers. The funding for this position is stable and offers the trainee wide latitude in the design and pursuit of their research project. The successful candidate will have access to NHGRI’s established and robust bioinformatics infrastructure, as well as resources made available through NIH’s Center for Information Technology (CIT) and the National Center for Biotechnology Information (NCBI).</p>

<p>For more information on CSGB and NHGRI’s Intramural Research Program, please see http://genome.gov/DIR/.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37643/lorma-a-tool-for-correcting-sequencing-errors-in-long-reads</guid>
	<pubDate>Thu, 06 Sep 2018 16:21:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37643/lorma-a-tool-for-correcting-sequencing-errors-in-long-reads</link>
	<title><![CDATA[LoRMA: A tool for correcting sequencing errors in long reads]]></title>
	<description><![CDATA[<p><span>An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of&nbsp;</span><em>k</em><span>-mers, and second, the corrected reads are further polished using long-distance dependencies that are found using multiple alignments. According to our experiments, the proposed method is the most accurate one relying on long reads only for read sets with high coverage. Furthermore, when the coverage of the read set is at least 75&times;, the throughput of the new method is at least 20% higher.</span></p>
<blockquote>
<p><span>conda install -c atgc-montpellier lorma</span></p>
</blockquote><p>Address of the bookmark: <a href="https://gite.lirmm.fr/lorma/lorma-releases/wikis/home" rel="nofollow">https://gite.lirmm.fr/lorma/lorma-releases/wikis/home</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21934/ra-bioinformatics-at-bose-institute</guid>
  <pubDate>Tue, 07 Apr 2015 03:30:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Bose Institute]]></title>
  <description><![CDATA[
<p>Bose Institute, Kolkata, invites online applications from Indian Citizens for recruitment of Research Associate (05 posts) under Institute Plan Programmes : Improvement of Plants : Biotechnological, Genomic and Proteomic Approaches (programme No. – I), Bioinformatics and Computational Biology (programme No. – III), Microbial Genomics and Infection Biology (programme No. – V) and Basic &amp; Applied Problems in Physical and Environmental Sciences (programme No. – VII). All the posts are tenable for one (01) year.</p>

<p>ESSENTIAL QUALIFICATION: PH.D. DEGREE IN LIFE SCIENCES / PHYSICAL SCIENCE.</p>

<p>Research Associate for Programme No. –I Specialization in the area of plant molecular biology or plant proteomic study or plant pathogen interaction.<br />Research Associate for Programme No. –I Specialization in the area of plant / fungal Biotechnology, tissue culture and molecular biology<br />Research Associate for Programme No. –III Specialization in the area of structural biology and protein crystallography.<br />Research Associate for Programme No. – V Specialization in the area of microbial physiology (metabolism) or environmental microbiology, with experience in microbial genomics and proteomics.<br />Research Associate for Programme No. – VII Specialization in the area of Theoretical High Energy Astrophysics or Astroparticle Physics. Proven record of independent research experience in Astrophysical<br />Radiation Magnetohydrodynamics or Cosmic Ray Astrophysics. Experience in numerical techniques and /or date analysis would be additional advantage.<br />Associateship : 22,000/- p.m., plus admissible H.R.A. and Medical benefit.<br />Age: Below 3 Age : Below 35 years (Relaxable in case of SC/ST/OBC/Women candidates only as per rule).<br />SELECTION PROCEDURE FOR BOSE INSTITUTE- RESEARCH ASSOCIATE POST:</p>

<p>Candidates can apply on or before 13/4/2015.<br />No detailed information about the selection procedure is mentioned in the recruitment notification.<br />HOW TO APPLY FOR RESEARCH ASSOCIATE VACANCY IN BOSE INSTITUTE:</p>

<p>Interested and eligible candidates may read the application procedures and instructions carefully before applying through online as well as submitting the hard copy of the same. Candidates those who has submitted their Ph.D. Thesis and can produce Provisional Ph.D. Certificate at the time of Interview may also apply </p>

<p>Ref<br />Bose Institute Recruitment 2015 –  ADVT. NO. : BI/IF/35/2014-15.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37837/clipcrop-a-tool-for-detecting-structural-variations-with-single-base-resolution-using-soft-clipping-information</guid>
	<pubDate>Thu, 04 Oct 2018 16:39:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37837/clipcrop-a-tool-for-detecting-structural-variations-with-single-base-resolution-using-soft-clipping-information</link>
	<title><![CDATA[ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information]]></title>
	<description><![CDATA[<p>This is a tool for detecting structural variations using soft-clipping information From&nbsp;<a href="http://samtools.sourceforge.net/SAM1.pdf">SAM</a>&nbsp;files.</p>
<p>https://github.com/shinout/clipcrop</p><p>Address of the bookmark: <a href="https://github.com/shinout/clipcrop" rel="nofollow">https://github.com/shinout/clipcrop</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/21982/which-bioinformatics-journals-do-you-follow</guid>
	<pubDate>Fri, 10 Apr 2015 12:10:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/21982/which-bioinformatics-journals-do-you-follow</link>
	<title><![CDATA[Which Bioinformatics Journals Do You Follow?]]></title>
	<description><![CDATA[<p><span><span>Which are your favorite bioinformatics journals? The ones that you check every month or so, or that you are subscribed to?</span></span></p>]]></description>
	<dc:creator>Tenzin Paul</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39728/patterns-a-modeling-tool-dedicated-to-biological-network-modeling</guid>
	<pubDate>Fri, 26 Jul 2019 01:11:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39728/patterns-a-modeling-tool-dedicated-to-biological-network-modeling</link>
	<title><![CDATA[Patterns: a modeling tool dedicated to biological network modeling]]></title>
	<description><![CDATA[<p>It is designed to work with <strong>patterned data</strong>. Famous examples of problems related to patterned data are:</p>
<ul>
<li>recovering <strong>signals</strong> in networks after a <strong>stimulation</strong> (cascade network reverse engineering),</li>
<li>analysing <strong>periodic signals</strong>.</li>
</ul><p>Address of the bookmark: <a href="https://github.com/fbertran/Patterns" rel="nofollow">https://github.com/fbertran/Patterns</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22028/walk-in-for-research-asst-programmer-enterovirus-research-centre-mumbai-india</guid>
  <pubDate>Tue, 14 Apr 2015 12:36:51 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk in for Research Asst &amp; Programmer Enterovirus Research Centre Mumbai - India]]></title>
  <description><![CDATA[
<p>Enterovirus Research Centre Mumbai Jobs 2015 –</p>

<p>Walk in for Research Asst &amp; Programmer Posts: Enterovirus Research Centre, Mumbai, Indian Council of Medical Research has issued notification for the recruitment of Research Asst &amp; Programmer vacancies on temporary basis for the project entitled “An Atlas of Non-Polio Enterovirus Types Isolated from Cases of Acute Flaccid Paralysis in India”. Eligible candidates may walk in on 20-04-2015 from 10:00 AM to 12:00 Noon. Other details like age limit, educational qualification, how to apply are given below…</p>

<p>Enterovirus Research Centre Mumbai Vacancy Details:<br />Total No. of Posts: 04<br />Name of the Posts:<br />1. Research Assistant: 03 Posts<br />2. Programmer: 01 Post</p>

<p>Age Limit: Candidates age should below 28 years. Age relaxations are applicable as per rules.</p>

<p>Educational Qualification: Candidates should have M.Sc (1st Class) in Microbiology/ Bioinformatics/ Biotechnology/ Life Science for post 1, BE/ B.Tech/ MCA for post 2.</p>

<p>Selection Process: Candidates are selected based on their performance in interview.</p>

<p>How to Apply: Eligible candidates may attend for interview along with original certificates, CV, attested copies of relevant certificates, one recent passport size photograph duly affixed on right side of application at Enterovirus Research Centre, Mumbai, Indian Council of Medical Research, Haffkine Institute Cmpound, Acharya Donde Marg, Parel, Mumbai-400012 on 20-04-2015 from 10:00 AM to 12:00 Noon.</p>

<p>Important Dates:<br />Date &amp; Time of Interview: 20-04-2015 from 10:00 AM to 12:00 Noon.<br />Registration Time: 12:00 Noon.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41046/iseqqc-a-tool-for-expression-based-quality-control-in-rna-sequencing</guid>
	<pubDate>Sun, 16 Feb 2020 08:47:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41046/iseqqc-a-tool-for-expression-based-quality-control-in-rna-sequencing</link>
	<title><![CDATA[iSeqQC: a tool for expression-based quality control in RNA sequencing]]></title>
	<description><![CDATA[<p><span>iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering, agglomerative hierarchical clustering and correlation coefficients to provide insight into outliers.</span></p>
<p><a href="http://cancerwebpa.jefferson.edu/iSeqQC/">http://cancerwebpa.jefferson.edu/iSeqQC/</a></p>
<p><a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3399-8">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3399-8</a></p><p>Address of the bookmark: <a href="https://github.com/gkumar09/iSeqQC" rel="nofollow">https://github.com/gkumar09/iSeqQC</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/22050/binc-sample-question-paper</guid>
	<pubDate>Thu, 16 Apr 2015 09:15:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/22050/binc-sample-question-paper</link>
	<title><![CDATA[BINC Sample Question Paper !!!]]></title>
	<description><![CDATA[<p>BINC sample question paper round THREE ...</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/22050" length="316" type="text/plain" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41571/wego-simple-but-useful-tool-for-visualizing-comparing-and-plotting-go-gene-ontology-annotation-results</guid>
	<pubDate>Sun, 12 Apr 2020 10:02:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41571/wego-simple-but-useful-tool-for-visualizing-comparing-and-plotting-go-gene-ontology-annotation-results</link>
	<title><![CDATA[WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results]]></title>
	<description><![CDATA[<p><span>WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many researches. Therefore we have updated WEGO 2.0 in 2018. Here are some changes we&rsquo;ve made:</span><br><span>1. The limit of input file numbers was cancelled. Now the users could upload as many files as they want with one operation.</span><br><span>2. We have added the reference data of 9 species for users selection.</span><br><span>3. Besides the traditional WEGO histogram, WEGO 2.0 outputs an additional type of bar graph showing GO terms with significant gene number differences.</span></p><p>Address of the bookmark: <a href="http://wego.genomics.org.cn/" rel="nofollow">http://wego.genomics.org.cn/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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