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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27092?offset=360</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29644/junior-research-fellow-at-rajiv-gandhi-centre-for-biotechnology-thiruvananthapuram</guid>
  <pubDate>Mon, 07 Nov 2016 10:27:06 -0600</pubDate>
  <link></link>
  <title><![CDATA[Junior Research Fellow at Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram]]></title>
  <description><![CDATA[
<p>Adv. # 22/ 2016<br />Applications are invited from suitable candidates for one position of Junior Research Fellow in a DST funded bioinformatics research project entitled "Major gene influxes in microbial genome evolution" in the Laboratory of Dr. Shijulal Nelson-Sathi at Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram.</p>

<p>ESSENTIAL QUALIFICATIONS:<br />We are looking for a motivated candidate with keen interest in bioinformatics and microbial genome evolution. The candidate must have a Master’s Degree in Bioinformatics, Computational Biology, Computer Science, Microbiology, Biology or a related field with good academic record.</p>

<p>DESIRABLE QUALIFICATIONS<br />Hands on research experience on handling next generation sequencing data and phylogenetic reconstruction methods. Excellent programming skills (Perl/Python/Java/Php) and experience in working on Unix/Linux platform is preferred. Furthermore; good knowledge is required in statistics (R/Matlab) and the application of bioinformatics analysis tools.</p>

<p>AGE:<br />Below 28 years as on 15th November, 2016.</p>

<p>EMOLUMENTS:<br />Rs. 25,000 + 20% HRA for NET/GATE qualified and Post Graduate in Professional Degree course qualified candidates and <br />Rs. 12,000/- + 20% HRA for others.</p>

<p>DURATION:<br />Initial appointment will be given for one year and further extension will be based on the performance till termination of the project.<br />Only those fulfilling the above criteria need apply and will be called for interview. In the event of more than 10 candidates being short-listed by screening the applications, a written test will be conducted before the selection interview and only those who are successful in the written test will be interviewed. No TA/ DA will be given for appearing in the interview.</p>

<p>Suitably qualified candidates may send applications in the prescribed format (Download here) with a photograph, a copy of full resume indicating the percentage of Marks obtained and attested photocopies of credentials &amp; experience to reach the undersigned on or before 15th November, 2016. Envelopes must be superscripted with abbreviated title of the project, advertisement number and job title. Selection to the position will not entitle the candidate to any future positions at RGCB (permanent or otherwise). As with all project positions at RGCB, the position will be co terminus with end of the project.</p>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29658/bookmarks-biostatistics-materials-and-books</guid>
	<pubDate>Tue, 08 Nov 2016 07:42:42 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29658/bookmarks-biostatistics-materials-and-books</link>
	<title><![CDATA[Bookmarks Biostatistics materials and books]]></title>
	<description><![CDATA[<p>Biostatistics did not spring fully formed from the brow of R. A. Fisher, but evolved over many years. This process is continuing, although it may not be obvious from the outside. It has been ten years since the first edition of this book appeared (and rather longer since it was begun). Over this time, new areas of biostatistics have been developed and emphases and interpretations have changed</p>
<p>Please bookmarks your favourate biostatistics&nbsp;books in commend sectons ...</p><p>Address of the bookmark: <a href="http://www.cos.ufrj.br/~bioestatistica/livros/Introduction%20to%20Biostatistics.pdf" rel="nofollow">http://www.cos.ufrj.br/~bioestatistica/livros/Introduction%20to%20Biostatistics.pdf</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29842/research-assistant-bioinformatics-recruitment-in-national-institute-of-cancer-prevention-research-icmr-on-contract-basis</guid>
  <pubDate>Tue, 15 Nov 2016 17:15:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Assistant Bioinformatics recruitment in National Institute Of Cancer Prevention &amp; Research (ICMR) on Contract basis]]></title>
  <description><![CDATA[
<p>National Institute Of Cancer Prevention &amp; Research - ICMR</p>

<p>Research Assistant Bioinformatics recruitment in National Institute Of Cancer Prevention &amp; Research (ICMR) on Contract basis <br />Project entitled: “Next generation EGFR inhibitor identification using ligand based QSAR technique” </p>

<p>Essential: M.Sc. in Bioinformatics or related field. Desirable: Experience in QSAR and structure based drug designing.<br />Age: 28 years<br />No.of Post: 1</p>

<p>Pay Scale : Rs.27000</p>

<p>Application format is attached and should be sent by post to Dr. Subhash M Agarwal, Scientist D, Division of Bioinformatics, National Institute of Cancer Prevention &amp; Research (ICMR), Plot No. I-7, Sector-39, Noida 201301 (U.P).</p>

<p>More at http://www.icmr.nic.in/icmrnews/NICPR_Advertisement%20for%20RA.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30147/cisa-contig-integrator-for-sequence-assembly</guid>
	<pubDate>Thu, 15 Dec 2016 05:42:21 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30147/cisa-contig-integrator-for-sequence-assembly</link>
	<title><![CDATA[CISA: Contig Integrator for Sequence Assembly]]></title>
	<description><![CDATA[<p>A plethora of algorithmic assemblers have been proposed for the <em>de novo</em> assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Optimizing various parameters in an assembler is often performed in order to generate the most optimal assembly. However, few efforts have been pursued to take advantage of multiple assemblies to yield an assembly of high accuracy. In this study, we employ various state-of-the-art assemblers to generate different sets of contigs for bacterial genomes. A tool, named CISA, has been developed to integrate the assemblies into a hybrid set of contigs, resulting in assemblies of superior contiguity and accuracy, compared with the assemblies generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+ to be installed on the local machine. The source code of CISA and examples of its use are available at <a href="http://sb.nhri.org.tw/CISA/">http://sb.nhri.org.tw/CISA/</a>.</p><p>Address of the bookmark: <a href="http://sb.nhri.org.tw/CISA/en/CISA" rel="nofollow">http://sb.nhri.org.tw/CISA/en/CISA</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30168/gene-synteny-database</guid>
	<pubDate>Fri, 16 Dec 2016 11:09:39 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30168/gene-synteny-database</link>
	<title><![CDATA[Gene Synteny Database]]></title>
	<description><![CDATA[<p>Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number of full genome sequences available in public repositories. Despite this growth, bioinformatic tools available to visualize and compare genomes and to infer evolutionary events remain restricted to two or three genomes at a time, thus limiting the breadth and the nature of the question that can be investigated. Here we present Genomicus, a new synteny browser that can represent and compare unlimited numbers of genomes in a broad phylogenetic view. In addition, Genomicus includes reconstructed ancestral gene organization, thus greatly facilitating the interpretation of the data.</p>
<p><strong>Availability:</strong>&nbsp;Genomicus is freely available for online use at&nbsp;<a href="http://www.dyogen.ens.fr/genomicus" target="pmc_ext">http://www.dyogen.ens.fr/genomicus</a>&nbsp;while data can be downloaded at&nbsp;<a href="ftp://ftp.biologie.ens.fr/pub/dyogen/genomicus" target="pmc_ext">ftp://ftp.biologie.ens.fr/pub/dyogen/genomicus</a></p>
<p><strong>Contact:</strong>&nbsp;<a href="mailto:dev@null">rf.sne.eigoloib@crh</a></p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853686/" rel="nofollow">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853686/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30331/16th-congress-of-the-european-society-for-evolutionary-biology-eseb</guid>
  <pubDate>Thu, 22 Dec 2016 08:08:37 -0600</pubDate>
  <link></link>
  <title><![CDATA[16th Congress of the European Society for Evolutionary Biology (ESEB)]]></title>
  <description><![CDATA[
<p>Abstract submissions for our upcoming symposium on the Genomics of Adaptation that will take place as part of the 16th Congress of the European Society for Evolutionary Biology (ESEB). The conference will take place from August 20th - August 25th, 2017 in Groningen, the Netherlands. </p>

<p>SYMPOSIUM DESCRIPTION: Genomics of Adaptation [S16] Model organisms for life-history research are mainly studied in the lab where functional genetics is assessable. In general, however, knowledge about their eco-evolutionary dynamics, such as biotic interactions, is rare. By contrast, in organisms for which the ecology and adaptation strategies in the field are well known, we typically lack the appropriate genetic tools to investigate functionality. Advances in genomics and statistics as well as investments in evolutionary model organisms are now providing access to putatively adaptive genome-wide variation within species from across the tree of life. In this symposium, we focus on integrating life-history biology, genetics and evolutionary ecology in the genomics era. </p>

<p>We wish to (1) highlight the role of genetic architecture of complex traits, such as adaptations to biotic interactions or life-history traits; (2) contrast this to morphological traits which are generally thought to have a less complex genetic architecture; and (3) discuss the opportunities and drawbacks of specific model systems. </p>

<p>INVITED SPEAKERS: Josephine Pemberton, University of Cambridge (http://bit.ly/2hJWytJ ) Peter Tiffin, University of Minnesota (http://bit.ly/2hK7HuS ) </p>

<p>ABSTRACT SUBMISSION The deadline for abstract submission is January 10, 2017. For more information and to submit abstracts online, please visit: http://bit.ly/2fBXlvN We look forward to an exciting symposium and seeing you all in Groningen! Sincerely, Ben Blackman, UC Berkeley Maaike de Jong, University of Bristol Bart Pannebakker, Wageningen University Noah Whiteman, UC Berkeley Jelle Zandveld, Wageningen University</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/30364/bioinformatics-contest-2017</guid>
	<pubDate>Fri, 23 Dec 2016 14:03:37 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/30364/bioinformatics-contest-2017</link>
	<title><![CDATA[Bioinformatics Contest 2017!]]></title>
	<description><![CDATA[<p><a href="http://contest.bioinf.me" target="_blank">Bioinformatics Contest 2017</a>! Rosalind is co-organizer.<br /> Compete with thousands of people worldwide on bioinformatics problem solving.<br /> Everything is online. Qualification round starts on <strong>January 23, 2017</strong>. Final is on <span><span>Feb 18</span></span>.</p><p>You will need to solve bioinformatics problems using programming. The goal is to correctly solve as many problems as possible within 24 hours. Some of them will be approximation problems and will have partial grades. All rounds will be held online, submissions will be auto-graded in real time.</p><p>Check more at http://contest.bioinf.me/</p><p>Good luck!</p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30658/srf-bioinformatics-at-jnu</guid>
  <pubDate>Tue, 24 Jan 2017 07:34:35 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF Bioinformatics at JNU]]></title>
  <description><![CDATA[
<p>School of Life Sciences <br />Jawaharlal Nehru University <br />New Delhi 110067</p>

<p>Positions available</p>

<p>Applications were invited from for the following posts in an industry sponsored project. The project entitled "OsHK3b technology and Know How", valid for a period upto February, 2018.</p>

<p>Post 3: Senior Research Fellow (Computational Biologist / Metabolic engineering)</p>

<p>Salary: As per DBT rule.</p>

<p>Duration: All the above posts are purely temporary and liable to be terminated at any time without prior notice or ceased/withdrawn by the funding agency.</p>

<p>Age limit: The upper age limit for SRF shall be 32 years, which is relaxed upto 5 years in the case of candidates belonging to Schedule Castes/Schedule Tribes, Women, Physically Handicapped and OBC applicants.</p>

<p>Essential Qualifications: Masters/B Tech/Mtech in Basic Sciences with at least 2yrs of research experience in Bioinformatics/Computational Biology related to Database /portal building &amp; maintenance, high throughput data handling and analysis etc. For M.Sc/B.Tech, Published paper in peer-reviewed Journal and for M.Tech, thesis submission in computational biology is a must. Selection preference will be given to candidates with a good knowledge of Python and/or R. Knowledge of JAVA will also get a special consideration.</p>

<p>Desired Skills: Will be expected to manage ongoing research activities in the project, interact with Experimental group, manage the project data analysis, prepare file reports and associated project work etc. Familiarity with plant systems biology and genomics /metabolite resources related to plant metabolomics is desirable.</p>

<p>1. The post applied for must be clearly written on the Envelope containing the application <br />2. Applications received after last date shall not be entertained, School will not be responsible for any postal delay. <br />3. No application will be accepted via hand delivery or via e-mail. Please send printed &amp; signed applications with detailed CV on or before 31st January, 2017 by post to the following address:</p>

<p>Prof. Ashwani Pareek <br />(Project Investigator) <br />Stress Physiology and Molecular Biology Laboratory (Room No-413), <br />School of Life Sciences, <br />Jawaharlal Nehru University, <br />New Delhi, India – 110067 <br />Email: ashwanipareek@gmail.com</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31105/understanding-pacbio</guid>
	<pubDate>Fri, 24 Feb 2017 10:17:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31105/understanding-pacbio</link>
	<title><![CDATA[Understanding PacBio]]></title>
	<description><![CDATA[<p>This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to training modules (webinars and PowerPoint presentations) to help you get started with your data processing, as well as information for specialized applications.</p>
<p>Training Resources:</p>
<ul>
<li><a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Bioinformatics-Workshop">Bioinformatics Workshop (Webinars)</a></li>
<li><a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Bioinformatics-Training-Slides">Bioinformatics Training Slides</a></li>
</ul>
<p>Specialized Applications:</p>
<ul>
<li><a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/De-Novo-Assembly">De Novo Assembly</a></li>
<li><a href="https://github.com/PacificBiosciences/cDNA_primer/wiki">Transcriptome analysis</a></li>
<li><a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Base-modification-analysis">Base Modification Analysis</a></li>
<li><a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Barcoding">Barcoding</a></li>
<li><a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Data-Analysis-Tools">Data Analysis Tools</a></li>
<li><a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Minor-Variants-and-Phasing-Analysis">Minor Variants and Phasing Analysis</a></li>
</ul><p>Address of the bookmark: <a href="https://github.com/PacificBiosciences/Bioinformatics-Training/wiki" rel="nofollow">https://github.com/PacificBiosciences/Bioinformatics-Training/wiki</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30833/dnasp-v5-a-software-for-comprehensive-analysis-of-dna-polymorphism-data</guid>
	<pubDate>Mon, 06 Feb 2017 04:45:37 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30833/dnasp-v5-a-software-for-comprehensive-analysis-of-dna-polymorphism-data</link>
	<title><![CDATA[DnaSP v5: a software for comprehensive analysis of DNA polymorphism data]]></title>
	<description><![CDATA[<p><span>DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on insertion/deletion polymorphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC browser.</span></p><p>Address of the bookmark: <a href="http://www.ub.edu/dnasp/" rel="nofollow">http://www.ub.edu/dnasp/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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