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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27094?offset=1200</link>
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	<description><![CDATA[]]></description>
	
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29644/junior-research-fellow-at-rajiv-gandhi-centre-for-biotechnology-thiruvananthapuram</guid>
  <pubDate>Mon, 07 Nov 2016 10:27:06 -0600</pubDate>
  <link></link>
  <title><![CDATA[Junior Research Fellow at Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram]]></title>
  <description><![CDATA[
<p>Adv. # 22/ 2016<br />Applications are invited from suitable candidates for one position of Junior Research Fellow in a DST funded bioinformatics research project entitled "Major gene influxes in microbial genome evolution" in the Laboratory of Dr. Shijulal Nelson-Sathi at Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram.</p>

<p>ESSENTIAL QUALIFICATIONS:<br />We are looking for a motivated candidate with keen interest in bioinformatics and microbial genome evolution. The candidate must have a Master’s Degree in Bioinformatics, Computational Biology, Computer Science, Microbiology, Biology or a related field with good academic record.</p>

<p>DESIRABLE QUALIFICATIONS<br />Hands on research experience on handling next generation sequencing data and phylogenetic reconstruction methods. Excellent programming skills (Perl/Python/Java/Php) and experience in working on Unix/Linux platform is preferred. Furthermore; good knowledge is required in statistics (R/Matlab) and the application of bioinformatics analysis tools.</p>

<p>AGE:<br />Below 28 years as on 15th November, 2016.</p>

<p>EMOLUMENTS:<br />Rs. 25,000 + 20% HRA for NET/GATE qualified and Post Graduate in Professional Degree course qualified candidates and <br />Rs. 12,000/- + 20% HRA for others.</p>

<p>DURATION:<br />Initial appointment will be given for one year and further extension will be based on the performance till termination of the project.<br />Only those fulfilling the above criteria need apply and will be called for interview. In the event of more than 10 candidates being short-listed by screening the applications, a written test will be conducted before the selection interview and only those who are successful in the written test will be interviewed. No TA/ DA will be given for appearing in the interview.</p>

<p>Suitably qualified candidates may send applications in the prescribed format (Download here) with a photograph, a copy of full resume indicating the percentage of Marks obtained and attested photocopies of credentials &amp; experience to reach the undersigned on or before 15th November, 2016. Envelopes must be superscripted with abbreviated title of the project, advertisement number and job title. Selection to the position will not entitle the candidate to any future positions at RGCB (permanent or otherwise). As with all project positions at RGCB, the position will be co terminus with end of the project.</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29658/bookmarks-biostatistics-materials-and-books</guid>
	<pubDate>Tue, 08 Nov 2016 07:42:42 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29658/bookmarks-biostatistics-materials-and-books</link>
	<title><![CDATA[Bookmarks Biostatistics materials and books]]></title>
	<description><![CDATA[<p>Biostatistics did not spring fully formed from the brow of R. A. Fisher, but evolved over many years. This process is continuing, although it may not be obvious from the outside. It has been ten years since the first edition of this book appeared (and rather longer since it was begun). Over this time, new areas of biostatistics have been developed and emphases and interpretations have changed</p>
<p>Please bookmarks your favourate biostatistics&nbsp;books in commend sectons ...</p><p>Address of the bookmark: <a href="http://www.cos.ufrj.br/~bioestatistica/livros/Introduction%20to%20Biostatistics.pdf" rel="nofollow">http://www.cos.ufrj.br/~bioestatistica/livros/Introduction%20to%20Biostatistics.pdf</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29842/research-assistant-bioinformatics-recruitment-in-national-institute-of-cancer-prevention-research-icmr-on-contract-basis</guid>
  <pubDate>Tue, 15 Nov 2016 17:15:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Assistant Bioinformatics recruitment in National Institute Of Cancer Prevention &amp; Research (ICMR) on Contract basis]]></title>
  <description><![CDATA[
<p>National Institute Of Cancer Prevention &amp; Research - ICMR</p>

<p>Research Assistant Bioinformatics recruitment in National Institute Of Cancer Prevention &amp; Research (ICMR) on Contract basis <br />Project entitled: “Next generation EGFR inhibitor identification using ligand based QSAR technique” </p>

<p>Essential: M.Sc. in Bioinformatics or related field. Desirable: Experience in QSAR and structure based drug designing.<br />Age: 28 years<br />No.of Post: 1</p>

<p>Pay Scale : Rs.27000</p>

<p>Application format is attached and should be sent by post to Dr. Subhash M Agarwal, Scientist D, Division of Bioinformatics, National Institute of Cancer Prevention &amp; Research (ICMR), Plot No. I-7, Sector-39, Noida 201301 (U.P).</p>

<p>More at http://www.icmr.nic.in/icmrnews/NICPR_Advertisement%20for%20RA.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29998/csir-nehru-science-postdoctoral-research-fellowship</guid>
  <pubDate>Tue, 29 Nov 2016 12:34:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[CSIR Nehru Science Postdoctoral Research Fellowship]]></title>
  <description><![CDATA[
<p>CSIR Nehru Science Postdoctoral Research Fellowship</p>

<p>About Fellowship: <br />CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows.</p>

<p>It was started to identify promising and young researchers with novel ideas and provide them research opportunities in the areas of basic science, engineering, medicine &amp; agriculture.</p>

<p>The fellowship aims at facilitating their transition from mentored to independent research career.</p>

<p>In addition, check these ICTS Research Fellowships:<br />1.) Max-Planck Partner Group Fellowships 2017-18<br />2.) ICTS-Simons Postdoctoral Fellowships 2017<br />3.) ICTS Post Doctoral Fellowships 2017<br />4.) Airbus Prize Postdoctoral Fellowship 2017-18</p>

<p>Eligibility: To be eligible for this fellowship, you:<br />1.) PhD degree (within 3 years of award of PhD degree), OR<br />2.) Those who have submitted PhD theses.<br />3.) Applicants should have research publications in good impact factor SCI journals.<br />4.) Indian nationals, Persons of Indian Origin (PIO) &amp; Overseas Citizen of India (OCI), a can also apply.<br />5.) Maximum Age Limit: 32 years.</p>

<p>Duration: <br />– 2 Years.<br />– extendable for a maximum of 1 more year based on performance.</p>

<p>Remuneration: <br />– Rs. 50,000/- per month plus House Rent Allowance (HRA)<br />– A contingency grant of Rs. 3.0 lakh per annum.<br />– 25% of the contingency grant can be used for domestic and international travel.</p>

<p>Mode of Selection: You can apply throughout the year, but selection will be made twice a year, in June and December.</p>

<p>How to Apply: <br />– Read the instructions, given at Annexure-I in this PDF file.<br />– And, application form is given as, Annexure-II.<br />– Fill the form &amp; send it to the given address in the PDF file.</p>

<p>Deadline: Rolling Deadline (Applications accepted throughout the year)</p>

<p>Also See: Research Internship/ Fellowship in India:<br />1.) IIT Bombay Research Internship Awards Programme 2016-17<br />2.) IIT Delhi Internship Program 2016-17<br />3.) DAAD WISE – International Internship in Germany<br />4.) Summer Research Fellowship Programme| JNCASR Bangalore<br />5.) Indian Academy of Sciences Summer Internships 2017<br />6.) Winter Internship – IIT Bombay NPDE-TCA<br />7.) Viterbi – India Program 2017 | Research Internship in US<br />8.) Internship – Centre for Stem Cell Research, Vellore</p>

<p>Accommodation &amp; other benefits: <br />– Accommodation may be provided by CSIR, if available.<br />– Medical benefits as per CSIR norms.</p>

<p>For more details: <br />– Check this PDF Notification of Fellowship.<br />– List of CSIR Labs &amp; their work/activities can be seen at www.csir.res.in.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30018/bipype</guid>
	<pubDate>Thu, 01 Dec 2016 08:47:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30018/bipype</link>
	<title><![CDATA[bipype]]></title>
	<description><![CDATA[<p><span>Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data. If amplicons are input data, then bipype does reconstruction and pairs merging. After that biodiversity is searching. There are two types of searching depending on the amplicons types (ITS or 16S). If WGS are chosen, then bipype finds the SA coordinates of the input reads and generates alignments in the SAM format given single-end reads, aligns reads to reference sequence(s). All of these analyses will be shown with Krona program, which allows to show hierarchical data with pie charts.</span></p><p>Address of the bookmark: <a href="https://readthedocs.org/projects/bipype/" rel="nofollow">https://readthedocs.org/projects/bipype/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30090/standardized-velvet-assembly-report</guid>
	<pubDate>Fri, 09 Dec 2016 03:59:59 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30090/standardized-velvet-assembly-report</link>
	<title><![CDATA[Standardized velvet assembly report]]></title>
	<description><![CDATA[<p>Requirements:</p>
<ul>
<li>velvet (velveth velvetg should be in your PATH)</li>
<li>R (with Sweave)</li>
<li>pdflatex (usually part of TeTeX)</li>
<li>ggplot2 (from R prompt type install.packages("ggplot2","proto","xtable"))</li>
<li>Perl</li>
</ul>
<p>Optional:</p>
<ul>
<li>BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, add faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb.</li>
</ul>
<p>Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other flags</p>
<p>To Run:</p>
<ol>
<li><code>perl fastaAllSize mysequences.fa &gt; mysequences.stat or gunzip -c mysequences.fa.gz | fastaAllSize &gt; mysequences.stat</code>&nbsp;Substitute fastqAllSize for fastq files.</li>
<li><code>./permute.sh mysequences</code>&nbsp;(leave out the .fa)</li>
</ol>
<p>https://github.com/leipzig/standardized-velvet-assembly-report</p><p>Address of the bookmark: <a href="https://github.com/leipzig/standardized-velvet-assembly-report" rel="nofollow">https://github.com/leipzig/standardized-velvet-assembly-report</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30334/postdoc-at-ubritishcolumbia-in-troutgenomics</guid>
  <pubDate>Thu, 22 Dec 2016 08:18:46 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoc at UBritishColumbia in TroutGenomics]]></title>
  <description><![CDATA[
<p>Landscape Genomics Postdoc at UBC A research team at the University of British Columbia’s Department of Zoology and Biodiversity Research Centre is seeking a postdoctoral researcher in landscape genetics of native rainbow trout (Oncorhynchus mykiss). </p>

<p>This project is part of a larger Genome Canada project on genetics and physiology of adaptation to climate change in rainbow trout, and the population genomics component is in the labs of Eric Taylor and Michael Whitlock. The landscape genomics component primarily involves whole genome sequencing approaches to understanding the genomic basis of adaptation to features of habitat, but also to provide insights into phylogeography and the influence of watershed structure on population subdivision in rainbow trout. A PhD in a related field with expertise in basic theory and bioinformatic analysis of population genomics data is required. </p>

<p>The position is available for one year with renewal for up to three additional years. Salary is $55,000 per year plus benefits. To apply, please send a brief cover letter summarizing your qualifications for the position, a CV, and the names, addresses, phone numbers and emails of three references. </p>

<p>Review of applications will begin January 16, 2017. Address application materials to etaylor@zoology.ubc.ca to whom any questions can also be addressed. etaylor@zoology.ubc.ca</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30658/srf-bioinformatics-at-jnu</guid>
  <pubDate>Tue, 24 Jan 2017 07:34:35 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF Bioinformatics at JNU]]></title>
  <description><![CDATA[
<p>School of Life Sciences <br />Jawaharlal Nehru University <br />New Delhi 110067</p>

<p>Positions available</p>

<p>Applications were invited from for the following posts in an industry sponsored project. The project entitled "OsHK3b technology and Know How", valid for a period upto February, 2018.</p>

<p>Post 3: Senior Research Fellow (Computational Biologist / Metabolic engineering)</p>

<p>Salary: As per DBT rule.</p>

<p>Duration: All the above posts are purely temporary and liable to be terminated at any time without prior notice or ceased/withdrawn by the funding agency.</p>

<p>Age limit: The upper age limit for SRF shall be 32 years, which is relaxed upto 5 years in the case of candidates belonging to Schedule Castes/Schedule Tribes, Women, Physically Handicapped and OBC applicants.</p>

<p>Essential Qualifications: Masters/B Tech/Mtech in Basic Sciences with at least 2yrs of research experience in Bioinformatics/Computational Biology related to Database /portal building &amp; maintenance, high throughput data handling and analysis etc. For M.Sc/B.Tech, Published paper in peer-reviewed Journal and for M.Tech, thesis submission in computational biology is a must. Selection preference will be given to candidates with a good knowledge of Python and/or R. Knowledge of JAVA will also get a special consideration.</p>

<p>Desired Skills: Will be expected to manage ongoing research activities in the project, interact with Experimental group, manage the project data analysis, prepare file reports and associated project work etc. Familiarity with plant systems biology and genomics /metabolite resources related to plant metabolomics is desirable.</p>

<p>1. The post applied for must be clearly written on the Envelope containing the application <br />2. Applications received after last date shall not be entertained, School will not be responsible for any postal delay. <br />3. No application will be accepted via hand delivery or via e-mail. Please send printed &amp; signed applications with detailed CV on or before 31st January, 2017 by post to the following address:</p>

<p>Prof. Ashwani Pareek <br />(Project Investigator) <br />Stress Physiology and Molecular Biology Laboratory (Room No-413), <br />School of Life Sciences, <br />Jawaharlal Nehru University, <br />New Delhi, India – 110067 <br />Email: ashwanipareek@gmail.com</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</guid>
	<pubDate>Thu, 18 May 2017 05:31:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</link>
	<title><![CDATA[maf2synteny]]></title>
	<description><![CDATA[<p>A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat)</p>
<p>This tool is a standalone version of Ragout module [<a href="http://fenderglass.github./Ragout">http://fenderglass.github./Ragout</a>]</p><p>Address of the bookmark: <a href="https://github.com/fenderglass/maf2synteny" rel="nofollow">https://github.com/fenderglass/maf2synteny</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/30744/binc-2017</guid>
	<pubDate>Wed, 01 Feb 2017 09:36:22 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/30744/binc-2017</link>
	<title><![CDATA[BINC 2017]]></title>
	<description><![CDATA[<p><span>Pondicherry University,Puducherry,on behalf of Department of Biotechnology, Government of India, conducted the BINC examination in&nbsp;</span><span style="color: blue;">2015 and 2016.&nbsp;</span><span>The objective of this examination is to certify bioinformatics professionals, trained formally as well as self-trained.</span><span style="color: blue;">Registration for BINC 2017 examination will open from January 29,2017 to February 28,2017.</span><span>&nbsp;</span></p><p><span>Pondicherry University, Puducherry has been identified as a nodal agency by the Department of Biotechnology, Govt. of India to coordinate this examination along with nine centres namely, </span></p><p><span>Pune University, Pune; </span></p><p><span>Anna University, Chennai; </span></p><p><span>Bose Institute, Kolkata; </span></p><p><span>Institute of Bioinformatics &amp; Applied Biotechnology, Bangalore; </span></p><p><span>North-Eastern Hill University, Shillong, University of Hyderabad, Hyderabad; </span></p><p><span>University of Kerala, Thiruvananthapuram; </span></p><p><span>Jawaharlal Nehru University, New Delhi and </span></p><p><span>Assam Agricultural University, Guwahati.</span><span style="color: blue;"><strong>&nbsp;</strong></span></p><p><span style="color: blue;"><strong>In the BINC 2015 and 2016 examination, 23 candidates and five candidates were certified respectively.</strong></span><span>&nbsp;DBT has agreed to fund Research fellowships for all the BINC qualified Indian nationals to pursue Ph.D. in Indian Institutes/Universities. </span></p><p><span>Note that the candidate must possess a postgraduate degree(or equivalent) &amp; meet the criteria of the institutes/universities in order to avail research fellowship. </span></p><p><span>In addition, cash prize of Rs. 10,000/- will be awarded to the top 10 BINC qualifiers.</span></p><p><span>More at&nbsp;http://www.pondiuni.edu.in/exams/binc/</span></p>]]></description>
	<dc:creator>Jit</dc:creator>
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