<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27099?offset=590</link>
	<atom:link href="https://bioinformaticsonline.com/related/27099?offset=590" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17189/bioinformatics-svims-project-assistant-walk-in</guid>
  <pubDate>Sat, 20 Sep 2014 21:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SVIMS Project Assistant Walk IN]]></title>
  <description><![CDATA[
<p>SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES<br />TIRUPATI, ANDHRA PRADESH, INDIA- 517 507<br />BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS</p>

<p>Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS Bioinformatics centre under the BTISnet Project entitled “Creation of Bioinformatics Infrastructure Facility for promotion of Biology teaching through Bioinformatics” on 25.09.2014 at 11 AM in SVIMS, Tirupati. The engagement will be made purely on temporary basis for a period of one year and it can be terminated at any time without notice or without assigning any reason thereof by the Coordinator of the Project. The person engaged shall not be entitled for any claim implicit or explicit for absorption in the University.</p>

<p>1. Name of the post : Project Assistant</p>

<p>2. Qualification :<br />i) Essential : MSc Bioinformatics/MTech (Biotechnology/Bioinformatics)</p>

<p>ii) Desirable : Experience in Bioinformatics research work (Preference will be given to candidates  qualified in BINC/UGC/CSIR/NET/GATE)</p>

<p>3. Remuneration : 16000 + 10% HRA for NET/GATE candidates 14000 + 10% HRA for M. Tech / M.Sc. Candidates</p>

<p>4. Place of posting : Tirupati</p>

<p>5. Duration of the Project : One year</p>

<p>Terms and conditions:</p>

<p>1. Candidates are required to submit the Biodata relevant certificates in support of their age and educational qualification etc., before the interview committee, SVIMS University, Tirupati.</p>

<p>2. Candidates called for interview will attend the interview at their own cost.<br />3. Interim enquiries will not be entertained.<br />4. The maximum age limit for Project Assistant is 28 years for general category and 33 years for SC and ST category candidates as on 25th September, 2014.</p>

<p>Advertisement:</p>

<p>http://svr98.ehostpros.com/~svimsb98/Project%20Assistant_notification.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41893/sunbeam-a-robust-extensible-metagenomics-pipeline</guid>
	<pubDate>Thu, 18 Jun 2020 06:58:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41893/sunbeam-a-robust-extensible-metagenomics-pipeline</link>
	<title><![CDATA[sunbeam: A robust, extensible metagenomics pipeline]]></title>
	<description><![CDATA[<p><span>Sunbeam is a pipeline written in&nbsp;</span><a href="http://snakemake.readthedocs.io/">snakemake</a><span>&nbsp;that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses&nbsp;</span><a href="http://conda.io/">conda</a><span>&nbsp;to manage dependencies, so it doesn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workstations and clusters. To read more, check out&nbsp;</span><a href="https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0658-x">our paper in Microbiome</a><span>.</span></p>
<p><span><a href="https://sunbeam.readthedocs.io/en/latest/">https://sunbeam.readthedocs.io/en/latest/</a></span></p><p>Address of the bookmark: <a href="https://github.com/sunbeam-labs/sunbeam" rel="nofollow">https://github.com/sunbeam-labs/sunbeam</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/17501/nieduszynski-group</guid>
  <pubDate>Fri, 26 Sep 2014 19:35:06 -0500</pubDate>
  <link></link>
  <title><![CDATA[Nieduszynski Group]]></title>
  <description><![CDATA[
<p>Complete, accurate replication of the genome is essential for life. All chromosomes in eukaryotic cells must be duplicated and then segregated to daughter cells to ensure genetic integrity and produce the large number of cells that make up a multicellular organism. We are using genetic, genomic and computational methods to understand how chromosome replication is regulated to ensure genome stability. By focusing on the basic biology that underpins cell growth and division we aim to provide new insights that may help our understanding of diseases such as cancer and congenital disorders. </p>

<p>More http://www.nieduszynski.org/index.php<br />http://www.path.ox.ac.uk/research/cell-biology-and-pathology/conrad-nieduszynski-group</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42413/liftoff-an-accurate-gff3gtf-lift-over-pipeline</guid>
	<pubDate>Sun, 20 Dec 2020 01:36:37 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42413/liftoff-an-accurate-gff3gtf-lift-over-pipeline</link>
	<title><![CDATA[Liftoff: An accurate GFF3/GTF lift over pipeline]]></title>
	<description><![CDATA[<p><span>Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated &ldquo;chain&rdquo; file as input, Liftoff is a standalone tool that takes two genome assemblies and a reference annotation as input and outputs an annotation of the target genome.</span></p><p>Address of the bookmark: <a href="https://github.com/agshumate/Liftoff" rel="nofollow">https://github.com/agshumate/Liftoff</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17515/ngs-online-training</guid>
  <pubDate>Sat, 27 Sep 2014 07:42:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[NGS Online Training]]></title>
  <description><![CDATA[
<p>ArrayGen Technologies announces to provide online NGS training through out the globe. Now analyze your own NGS datasets from anywhere.For more information contact us at training@arraygen.com</p>

<p>Please visit our site at www.arraygen.com</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43384/lncpipea-nextflow-based-pipeline-for-comprehensive-analyses-of-long-non-coding-rnas-from-rna-seq-datasets</guid>
	<pubDate>Fri, 17 Sep 2021 01:57:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43384/lncpipea-nextflow-based-pipeline-for-comprehensive-analyses-of-long-non-coding-rnas-from-rna-seq-datasets</link>
	<title><![CDATA[LncPipe:A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets]]></title>
	<description><![CDATA[<p><span>The pipeline was developed based on a popular workflow framework&nbsp;</span><a href="https://github.com/nextflow-io/nextflow">Nextflow</a><span>, composed of four core procedures including reads alignment, assembly, identification and quantification. It contains various unique features such as well-designed lncRNAs annotation strategy, optimized calculating efficiency, diversified classification and interactive analysis report.&nbsp;</span><a href="https://github.com/likelet/LncPipe">LncPipe</a><span>&nbsp;allows users additional control in interuppting the pipeline, resetting parameters from command line, modifying main script directly and resume analysis from previous checkpoint.</span></p>
<p>Ref&nbsp;https://www.lncrnablog.com/lncpipe-a-nextflow-based-pipeline-for-identification-and-analysis-of-long-non-coding-rnas-from-rna-seq-data/</p>
<p><img src="https://ars.els-cdn.com/content/image/1-s2.0-S1673852718301176-gr1.jpg" alt="image" style="border: 0px;"></p><p>Address of the bookmark: <a href="https://github.com/likelet/LncPipe" rel="nofollow">https://github.com/likelet/LncPipe</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17751/jrf-in-bioinformatics-inmas-drdodelhi</guid>
  <pubDate>Wed, 01 Oct 2014 07:01:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ INMAS, DRDO,Delhi]]></title>
  <description><![CDATA[
<p>Institute of Nuclear Medicine and Allied Sciences (INMAS), Delhi under the aegis of Defence Research and Development Organisation (DRDO), is engaged in research and developmental work in radiation sciences, Neuro-Computing and Medical Image Processing. INMAS is looking for meritorious young researchers for pursuing research in the frontier areas at INMAS. The Institute invites applications from young and meritorious Indian nationals who are creative, have passion and desire to pursue R&amp;D in frontier areas. INMAS possesses ambience of a research cum academic institute coupled with an advanced R&amp;D infrastructure in a mission mode. It provides the best infrastructure, motivation and personality development prospects for talented students, dreaming of unparalleled success in their professional endeavors. INMAS provides state of the art research facilities for undertaking pioneering research with defence applications. </p>

<p>JRF (Maximum Tenure‐ Five Years: 2yrs as JRF and 3yrs  as SRF) 	<br />A first class Master’s Degree in Bioinformatics (likely 2 posts) 	<br />Around Rs 16,000/ Plus 30% HRA (as per rules of funding agency)</p>

<p>Applications are invited from candidates possessing the above qualifications. The upper age limit is as on the last date for receipt of application. (5 years relaxation to SC/ST candidates, 3 years to OBC candidates, and other entitled categories as per Govt rules). Actual No. of vacancies may vary.</p>

<p>Application form can be download from the website www.drdo.gov.in and E Mailed to inmashrd@gmail.com.<br />Last date to apply by email is 1700 hrs on 15 Oct 2014<br />Incomplete applications are liable to be rejected.<br />Confirmation will be sent to short-listed candidates through email only<br />Antecedents of selected candidates will be verified.<br />Written Test will be conducted from 0930-1030 hrs. Latecomers will not be considered.<br />Candidates will be required to produce certificates/testimonials in original at the time of interview.<br />It may please be noted that offer of Fellowship does not confer on fellows any right for absorption in DRDO.<br />Candidates should carry photocopy of Application form sent by email with them.<br />No TA/DA will be paid for attending interview &amp; on joining.<br />Last date to apply by email is 1700 hrs on 15 Oct 2014</p>

<p>More at http://drdo.gov.in/drdo/English/jrf29092014.pdf<br />http://drdo.gov.in/drdo/English/index.jsp?pg=inmas29092014.jsp</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44561/bactopia-a-flexible-pipeline-for-complete-analysis-of-bacterial-genomes</guid>
	<pubDate>Sat, 08 Jun 2024 16:25:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44561/bactopia-a-flexible-pipeline-for-complete-analysis-of-bacterial-genomes</link>
	<title><![CDATA[Bactopia: a flexible pipeline for complete analysis of bacterial genomes]]></title>
	<description><![CDATA[<p>Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your data with a broad set of tools, so that you can get to the fun part of analyses quicker!</p>
<p>Bactopia was inspired by&nbsp;<a href="https://staphopia.github.io/">Staphopia</a>, a workflow we (Tim Read and myself) released that is targeted towards&nbsp;<em>Staphylococcus aureus</em>&nbsp;genomes. Using what we learned from Staphopia and user feedback, Bactopia was developed from scratch with usability, portability, and speed in mind from the start.</p>
<p>Bactopia uses&nbsp;<a href="https://www.nextflow.io/">Nextflow</a>&nbsp;to manage the workflow, allowing for support of many types of environments (e.g. cluster or cloud). Bactopia allows for the usage of many public datasets as well as your own datasets to further enhance the analysis of your sequencing. Bactopia only uses software packages available from&nbsp;<a href="https://bioconda.github.io/">Bioconda</a>&nbsp;and&nbsp;<a href="https://conda-forge.org/">Conda-Forge</a>&nbsp;to make installation as simple as possible for&nbsp;<em>all</em>&nbsp;users.</p>
<p>To highlight the use of&nbsp;<a href="https://bactopia.github.io/latest/full-guide/">Bactopia</a>&nbsp;and&nbsp;<a href="https://bactopia.github.io/latest/bactopia-tools/">Bactopia Tools</a>, we performed an analysis of 1,664 public&nbsp;<em>Lactobacillus</em>&nbsp;genomes, focusing on&nbsp;<em>Lactobacillus crispatus</em>, a species that is a common part of the human vaginal microbiome. The results from this analysis are published in mSystems under the title:&nbsp;<em><a href="https://doi.org/10.1128/mSystems.00190-20">Bactopia: a flexible pipeline for complete analysis of bacterial genomes</a></em></p>
<p><a href="https://bactopia.github.io/latest/assets/bactopia-workflow.png"><img src="https://bactopia.github.io/latest/assets/bactopia-workflow.png" alt="Bactopia Workflow" style="border: 0px;"></a></p><p>Address of the bookmark: <a href="https://bactopia.github.io/latest/" rel="nofollow">https://bactopia.github.io/latest/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17966/internship-program-for-bioinformatics-biotechnology-professionals-no-of-vacancy-2</guid>
  <pubDate>Wed, 08 Oct 2014 01:10:08 -0500</pubDate>
  <link></link>
  <title><![CDATA[Internship Program for Bioinformatics / Biotechnology Professionals (No. Of Vacancy: 2)]]></title>
  <description><![CDATA[
<p>ArrayGen is offering an Internship Program for Post graduate Bioinformatics / Biotechnology students and professionals. ArrayGen Technologies provide an excellent opportunity to gain research experience and explore if a scientific career is right for you. Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis. Applications are accepted throughout the year. Accepted students will be listed on web with their schedules. Accepted students can attend our future workshops and trainings freely at the specified venue.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26252/recombination-detection-tool</guid>
	<pubDate>Tue, 02 Feb 2016 10:11:14 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26252/recombination-detection-tool</link>
	<title><![CDATA[Recombination detection tool]]></title>
	<description><![CDATA[<p>A program to detect recombination hotspots using population genetic data.</p>
<p>More at https://github.com/auton1/LDhot</p><p>Address of the bookmark: <a href="https://github.com/auton1/LDhot" rel="nofollow">https://github.com/auton1/LDhot</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

</channel>
</rss>