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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27113?offset=1150</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27685/biodbnet</guid>
	<pubDate>Thu, 02 Jun 2016 11:11:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27685/biodbnet</link>
	<title><![CDATA[BioDBnet]]></title>
	<description><![CDATA[<p><span>Database to Database Conversions</span> </p>
<p>db2db allows for conversions of identifiers from one database to other database identifiers or annotations. To use db2db select the input type of your data, changing the input type automatically changes the output options to the ones specific for the input selected. Then select one or more output types and add your identifiers in the ID list box. Set the remove duplicate values to 'No' if you do not want duplicates to be removed. Clicking on submit then returns a table of your inputs matched against all the outputs selected in the exact order as entered. Results can be limited to a particular taxon by entering it's <a href="https://biodbnet-abcc.ncifcrf.gov/tools/orgTaxon.php">Taxon ID</a>. The performance will vary widely depending on the number of outputs and the options selected. Conversions to a single output with the default options should complete in a few seconds</p><p>Address of the bookmark: <a href="https://biodbnet-abcc.ncifcrf.gov/db/db2db.php" rel="nofollow">https://biodbnet-abcc.ncifcrf.gov/db/db2db.php</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27701/assistant-professor-bioinformatics-teaching-assistant-at-gujarat-university</guid>
  <pubDate>Sat, 04 Jun 2016 16:04:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor Bioinformatics / Teaching Assistant at Gujarat University]]></title>
  <description><![CDATA[
<p>Assistant Professor Bioinformatics / Teaching Assistant Jobs recruitment in Gujarat University<br />Departments :</p>

<p>M.Sc. Bioinformatics Climate Change and Impacts Management<br />M.Sc. Biotechnology and Clinical Research</p>

<p>Department of Computer Science (Rollwala Computer Centre)<br />Appointment will be on purely contract basis for 11 months on consolidated salary. Reservation as per rules<br /> <br />How to apply<br />All the candidate are here by required to fill up the application form and given to concern Department, Gujarat University, Ahmedabad (Form can be submitted personally or thorough post/courier.) Candidates are supposed to attach the self attested photocopies of their required testimonials along with application form. Last date of receipt of application is 10/06/2016.</p>

<p>More http://www.gujaratuniversity.org.in/web/NWD/NewsEvents/1700_Recruitments%20at%20Gujarat%20University.asp</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27821/blobsplorer</guid>
	<pubDate>Tue, 14 Jun 2016 10:28:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27821/blobsplorer</link>
	<title><![CDATA[Blobsplorer]]></title>
	<description><![CDATA[<p>Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of contigs with a view to separating out those belonging to different taxa.</p>
<p>Blobsplorer is unlikely to be of use on its own as it requires contig data to be supplied in a format that involves considerable preprocessing (see below for a description). The easiest way to use Blobsplorer is as part of a workflow using scripts from <a href="https://github.com/blaxterlab/blobology">here</a>.</p><p>Address of the bookmark: <a href="http://nematodes.org/martin/blobsplorer/blobsplorer.html" rel="nofollow">http://nematodes.org/martin/blobsplorer/blobsplorer.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28164/greengenes-database</guid>
	<pubDate>Wed, 29 Jun 2016 10:03:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28164/greengenes-database</link>
	<title><![CDATA[Greengenes database]]></title>
	<description><![CDATA[<p>The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and tools presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpreting microarray results, and aligning/annotating novel sequences. If you are an ARB user, you can use greengenes to keep your own local database current.</p><p>Address of the bookmark: <a href="http://greengenes.lbl.gov/cgi-bin/nph-index.cgi" rel="nofollow">http://greengenes.lbl.gov/cgi-bin/nph-index.cgi</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27945/srf-project-assistant-bioinformatics-at-nirrh</guid>
  <pubDate>Sun, 19 Jun 2016 09:11:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF/ Project Assistant Bioinformatics at NIRRH]]></title>
  <description><![CDATA[
<p>SRF/ Project Assistant Bioinformatics recruitment in National Institute for Research in Reproductive Health (NIRRH)</p>

<p>Title of Project : 1. “Analysis Of The Structures Of Known Antimicrobial Peptides Using Machine Learning Algoitms And Molecular Dynamics Simulations”</p>

<p>Senior Research Fellow /1 Post</p>

<p>Qualification: First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience and CSIR/UGC/ICMR net qualified OR First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience Research experience in bioinformatics and wetlab methods. </p>

<p>Age: Not exceeding 35 Years</p>

<p>Pay Scale : Rs.18,000/- + 30% HRA Rs.14,000/- + 30% HRA </p>

<p>Project Assistant (Level-II) /1 Post</p>

<p>Qualification:  First class M.Sc. in Bioinformatics/ Biological Sciences/Computer Sciences Training experience in bioinformatics and wetlab methods .</p>

<p>Age: Not exceeding 28 Years </p>

<p>Pay Scale : Rs.8,000<br />How to apply<br />Candidates must bring along with them all the relevant documents in original and one set of attested photocopies of the same and one passport size recent colour photograph. </p>

<p>Walk-in-Interview on 28.06.2016 between 09:00 hrs. to 12:00 hrs.</p>

<p>More at http://www.nirrh.res.in/links/job_oppotunities.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28141/csbb-v10</guid>
	<pubDate>Wed, 29 Jun 2016 07:33:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28141/csbb-v10</link>
	<title><![CDATA[CSBB-v1.0]]></title>
	<description><![CDATA[<p>CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX, MAC OS and Windows platforms.</p>
<p>Currently CSBB provides 13 modules focused on analytical tasks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-scores when comparing expression data from different platforms.</p>
<p>More at&nbsp;https://github.com/skygenomics/CSBB-v1.0</p><p>Address of the bookmark: <a href="https://github.com/skygenomics/CSBB-v1.0" rel="nofollow">https://github.com/skygenomics/CSBB-v1.0</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28286/nipgr-hires-research-associate-jrf-laboratory-assistant</guid>
  <pubDate>Mon, 04 Jul 2016 20:12:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[NIPGR Hires Research Associate, JRF, Laboratory Assistant]]></title>
  <description><![CDATA[
<p>National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg - Delhi, Delhi <br />₹15,000 a month<br />National Institute of Plant Genome Research (NIPGR) invites applications to recruit on vacant posts of Research Associate (RA), Junior Research Fellow (JRF) and Laboratory Assistant. Applications against these Sarkari Naukri can be submitted on or before 16 July 2016. <br />NIPGR Vacancy 2016 Details <br />1. Research Associate (RA) <br />Qualification: Ph.D. degree (awarded) in Molecular Biology/Biotechnolgy/Biochemistry/Plant Science/ Life Sciences/Bioinformatics or related field with 03 years post-doctoral research experience or 02 research papers in the journals of International repute are eligible to apply. Experience in the area of functional genomics, proteomics, metabolomics, multiomics and system biology will be preferred. <br />Age Limit: As Per Rules <br />2. Junior Research Fellow (JRF) <br />Qualification: M.Sc. degree or equivalent in Biotechnolgy/Biochemistry/Plant Science or Botany/ Life Sciences/Bioinformatics/ Molecular Biology or any other related field. Experience in advanced multiomics, big data analysis, molecular and system biology techniques will be given preference. <br />Age Limit: As Per Rules <br />3. Laboratory Assistant <br />Qualification: B.Sc. degree with 05 years working experience in government R&amp;D Laboratory assisting in the field of molecular biology and genomis. <br />Pay Scale: Rs.15000/- Per Month <br />Age Limit: As Per Rules <br />How to Apply : Duly filled-in applications in prescribed application format along with copies of required documents should be reach to: Dr. Subhra Chakraborty, Staff Scientist-VII, National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, P.O. Box NO. 10531, New Delhi – 110067 . The Last Date to submit application is 16 July 2016</p>

<p>Source: http://www.nipgr.res.in/careers/vacancies_latest.php#<br />Form at http://www.nipgr.res.in/files/careers/format_RA_JRF_LA.doc</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28425/advertisement-for-junior-research-fellowjrf-at-school-of-computational-and-integrative-sciences-jawaharlal-nehru-university</guid>
  <pubDate>Thu, 14 Jul 2016 07:24:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Advertisement for Junior Research Fellow(JRF)  at School of Computational and Integrative Sciences  Jawaharlal Nehru University]]></title>
  <description><![CDATA[
<p>Advertisement for Junior Research Fellow(JRF) - (1)</p>

<p>Applications are invited for a post in DST, India funded Project entitled: "Positive and negative impacts of macromolecular crowding agents during target site location by DNA binding proteins – origin of optimal search at physiological ionic concentration (Reference Number: ECR/2016/000188) ''. The selected candidate will be appointed purely on temporary basis, initially for two years as a JRF that may be extended to one year of SRF based on the performance.</p>

<p>Position: Junior Research Fellow (1)</p>

<p>Qualifications &amp; Experience: Candidate must have a consistently good academic record with at least 60% marks in all throughout and must have qualified NET/GATE.</p>

<p>Desirable: Basic knowledge in the field of biophysics, molecular simulations and computational biology are desirable.</p>

<p>Salary: Consolidated Rs. 25,000 per month.</p>

<p>Tenure: The project duration is for three years and the selected candidate would be appointed after an interview. Appointment will be purely on temporary basis as stipulated by the existing rules of the University.</p>

<p>Interested candidates need to send an application to the address mentioned below mentioning the name of the project and post applied for (on the cover of the envelope).</p>

<p>The applications along with CV should be mailed at the address given below. Name, address, contact number and e. mail address of two referees must be enclosed with the application. The last date for the application is July 31st 2016.</p>

<p>Dr. Arnab Bhattacharjee (Principal Investigator) <br />Assistant Professor <br />School of Computational and Integrative Sciences <br />Jawaharlal Nehru University <br />New Delhi-110067 <br />E-mail: arnab@jnu.ac.in</p>

<p>Note: 1. Only shortlisted candidates will be communicated to appear in the interview at SCIS, JNU and no other communications in this regard will be entertained.</p>

<p>2. No TA/DA will be paid for appearing in interview.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34246/unicycler-hybrid-assembly-pipeline-for-bacterial-genomes</guid>
	<pubDate>Fri, 10 Nov 2017 03:58:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34246/unicycler-hybrid-assembly-pipeline-for-bacterial-genomes</link>
	<title><![CDATA[Unicycler: Hybrid assembly pipeline for bacterial genomes]]></title>
	<description><![CDATA[<p><span>Unicycler is an assembly pipeline for bacterial genomes. It can assemble&nbsp;</span><a href="http://www.illumina.com/">Illumina</a><span>-only read sets where it functions as a&nbsp;</span><a href="http://cab.spbu.ru/software/spades/">SPAdes</a><span>-optimiser. It can also assembly long-read-only sets (</span><a href="http://www.pacb.com/">PacBio</a><span>&nbsp;or&nbsp;</span><a href="https://nanoporetech.com/">Nanopore</a><span>) where it runs a&nbsp;</span><a href="https://github.com/lh3/miniasm">miniasm</a><span>+</span><a href="https://github.com/isovic/racon">Racon</a><span>&nbsp;pipeline. For the best possible assemblies, give it both Illumina reads&nbsp;</span><em>and</em><span>&nbsp;long reads, and it will conduct a hybrid assembly.</span></p><p>Address of the bookmark: <a href="https://github.com/rrwick/Unicycler" rel="nofollow">https://github.com/rrwick/Unicycler</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28547/jrf-bioinformatics-at-iit-delhi</guid>
  <pubDate>Mon, 25 Jul 2016 03:26:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at IIT, Delhi]]></title>
  <description><![CDATA[
<p>No. IITD/IRD/RP03017/4254/Advertisement No.: IITD/IRD/093/2016<br />JRF Bioinformatics  job vacancies in Indian Institute of Technology Delhi (IIT Delhi)<br />Title : Elucidation of Pathologically Relevant miRNAs Responsible for Disease Progression and Resistance to Chemotherapy in Chronic Lymphocytic Leukemia (CLL) (RP03017)<br />Qualification : Candidates having first class B. Tech. / M.Sc. Degree or equivalent in Bioinformatics or Biotechnology with NET qualification. Desirable: Candidates having computer programming skills (C++, Python, Java, Web designing using Materialize frameworks, database management, offline software GUI development) with knowledge of Linux server environment and / or experience in next generation sequencing (NGS) data analysis, MD simulations will be preferred.<br />No. of Post : 01<br />Pay Scale : Rs.25,000/-<br />How to apply<br />Walk-in test / interview will be held on 04/08/2016, 03.00 p.m. at Committee Room No. 230, Block-I, Department of Biochemical Engineering &amp; Biotechnology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi-110016.</p>

<p>More at http://ird.iitd.ac.in/sites/default/files/jobs/project/IITD-IRD-093-2016.pdf</p>
]]></description>
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