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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27113?offset=1300</link>
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	<description><![CDATA[]]></description>
	
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29842/research-assistant-bioinformatics-recruitment-in-national-institute-of-cancer-prevention-research-icmr-on-contract-basis</guid>
  <pubDate>Tue, 15 Nov 2016 17:15:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Assistant Bioinformatics recruitment in National Institute Of Cancer Prevention &amp; Research (ICMR) on Contract basis]]></title>
  <description><![CDATA[
<p>National Institute Of Cancer Prevention &amp; Research - ICMR</p>

<p>Research Assistant Bioinformatics recruitment in National Institute Of Cancer Prevention &amp; Research (ICMR) on Contract basis <br />Project entitled: “Next generation EGFR inhibitor identification using ligand based QSAR technique” </p>

<p>Essential: M.Sc. in Bioinformatics or related field. Desirable: Experience in QSAR and structure based drug designing.<br />Age: 28 years<br />No.of Post: 1</p>

<p>Pay Scale : Rs.27000</p>

<p>Application format is attached and should be sent by post to Dr. Subhash M Agarwal, Scientist D, Division of Bioinformatics, National Institute of Cancer Prevention &amp; Research (ICMR), Plot No. I-7, Sector-39, Noida 201301 (U.P).</p>

<p>More at http://www.icmr.nic.in/icmrnews/NICPR_Advertisement%20for%20RA.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29998/csir-nehru-science-postdoctoral-research-fellowship</guid>
  <pubDate>Tue, 29 Nov 2016 12:34:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[CSIR Nehru Science Postdoctoral Research Fellowship]]></title>
  <description><![CDATA[
<p>CSIR Nehru Science Postdoctoral Research Fellowship</p>

<p>About Fellowship: <br />CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows.</p>

<p>It was started to identify promising and young researchers with novel ideas and provide them research opportunities in the areas of basic science, engineering, medicine &amp; agriculture.</p>

<p>The fellowship aims at facilitating their transition from mentored to independent research career.</p>

<p>In addition, check these ICTS Research Fellowships:<br />1.) Max-Planck Partner Group Fellowships 2017-18<br />2.) ICTS-Simons Postdoctoral Fellowships 2017<br />3.) ICTS Post Doctoral Fellowships 2017<br />4.) Airbus Prize Postdoctoral Fellowship 2017-18</p>

<p>Eligibility: To be eligible for this fellowship, you:<br />1.) PhD degree (within 3 years of award of PhD degree), OR<br />2.) Those who have submitted PhD theses.<br />3.) Applicants should have research publications in good impact factor SCI journals.<br />4.) Indian nationals, Persons of Indian Origin (PIO) &amp; Overseas Citizen of India (OCI), a can also apply.<br />5.) Maximum Age Limit: 32 years.</p>

<p>Duration: <br />– 2 Years.<br />– extendable for a maximum of 1 more year based on performance.</p>

<p>Remuneration: <br />– Rs. 50,000/- per month plus House Rent Allowance (HRA)<br />– A contingency grant of Rs. 3.0 lakh per annum.<br />– 25% of the contingency grant can be used for domestic and international travel.</p>

<p>Mode of Selection: You can apply throughout the year, but selection will be made twice a year, in June and December.</p>

<p>How to Apply: <br />– Read the instructions, given at Annexure-I in this PDF file.<br />– And, application form is given as, Annexure-II.<br />– Fill the form &amp; send it to the given address in the PDF file.</p>

<p>Deadline: Rolling Deadline (Applications accepted throughout the year)</p>

<p>Also See: Research Internship/ Fellowship in India:<br />1.) IIT Bombay Research Internship Awards Programme 2016-17<br />2.) IIT Delhi Internship Program 2016-17<br />3.) DAAD WISE – International Internship in Germany<br />4.) Summer Research Fellowship Programme| JNCASR Bangalore<br />5.) Indian Academy of Sciences Summer Internships 2017<br />6.) Winter Internship – IIT Bombay NPDE-TCA<br />7.) Viterbi – India Program 2017 | Research Internship in US<br />8.) Internship – Centre for Stem Cell Research, Vellore</p>

<p>Accommodation &amp; other benefits: <br />– Accommodation may be provided by CSIR, if available.<br />– Medical benefits as per CSIR norms.</p>

<p>For more details: <br />– Check this PDF Notification of Fellowship.<br />– List of CSIR Labs &amp; their work/activities can be seen at www.csir.res.in.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30198/faculty-at-indian-institute-of-science-education-and-research-berhampur</guid>
  <pubDate>Mon, 19 Dec 2016 03:34:26 -0600</pubDate>
  <link></link>
  <title><![CDATA[Faculty at Indian Institute of Science Education and Research Berhampur]]></title>
  <description><![CDATA[
<p>Advt. No: IISERBPR/DoFA/2016/2</p>

<p>Advertisement for Faculty Positions</p>

<p>The IISER Berhampur, an Institute of national importance, established through an act of Parliament is an autonomous organization under the Ministry of HRD, Govt. of India, to promote quality education and cutting edge research in basic sciences and to provide a platform for the faculty to engage in high quality education, at undergraduate and postgraduate levels. The Institute invites applications for faculty positions at the level of Assistant Professor (C) /Assistant Professor in the following disciplines:</p>

<p>1. Biological Sciences</p>

<p>2. Chemistry</p>

<p>3. Computer Sciences</p>

<p>4. Mathematics</p>

<p>5. Physics</p>

<p>Only hard copy of application in the prescribed format, via Speed Post should be sent to the Dean, Faculty Affairs, IISER Berhampur, Industrial Training Institute (ITI) Berhampur, Engineering School Road, Berhampur - 760 010, Ganjam District, Odisha, before 1700 hrs., December 30, 2016.</p>

<p>http://www.iiserbpr.ac.in</p>

<p>More Info : http://www.iiserbpr.ac.in/vacancies/Advertisement%20for%20Faculty%20Positions%20at%20IISER%20Berhampur.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30149/mypro-a-seamless-pipeline-for-automated-prokaryotic-genome-assembly-and-annotation</guid>
	<pubDate>Thu, 15 Dec 2016 05:47:35 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30149/mypro-a-seamless-pipeline-for-automated-prokaryotic-genome-assembly-and-annotation</link>
	<title><![CDATA[MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation]]></title>
	<description><![CDATA[<p>MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces more contiguous assemblies, higher N50 values and lower number of contigs.</p>
<p>More at https://sourceforge.net/projects/sb2nhri/files/MyPro/</p><p>Address of the bookmark: <a href="http://www.sciencedirect.com/science/article/pii/S0167701215001207" rel="nofollow">http://www.sciencedirect.com/science/article/pii/S0167701215001207</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30334/postdoc-at-ubritishcolumbia-in-troutgenomics</guid>
  <pubDate>Thu, 22 Dec 2016 08:18:46 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoc at UBritishColumbia in TroutGenomics]]></title>
  <description><![CDATA[
<p>Landscape Genomics Postdoc at UBC A research team at the University of British Columbia’s Department of Zoology and Biodiversity Research Centre is seeking a postdoctoral researcher in landscape genetics of native rainbow trout (Oncorhynchus mykiss). </p>

<p>This project is part of a larger Genome Canada project on genetics and physiology of adaptation to climate change in rainbow trout, and the population genomics component is in the labs of Eric Taylor and Michael Whitlock. The landscape genomics component primarily involves whole genome sequencing approaches to understanding the genomic basis of adaptation to features of habitat, but also to provide insights into phylogeography and the influence of watershed structure on population subdivision in rainbow trout. A PhD in a related field with expertise in basic theory and bioinformatic analysis of population genomics data is required. </p>

<p>The position is available for one year with renewal for up to three additional years. Salary is $55,000 per year plus benefits. To apply, please send a brief cover letter summarizing your qualifications for the position, a CV, and the names, addresses, phone numbers and emails of three references. </p>

<p>Review of applications will begin January 16, 2017. Address application materials to etaylor@zoology.ubc.ca to whom any questions can also be addressed. etaylor@zoology.ubc.ca</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30550/genomering-alignment-visualization-based-on-supergenome-coordinates</guid>
	<pubDate>Wed, 18 Jan 2017 10:24:10 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30550/genomering-alignment-visualization-based-on-supergenome-coordinates</link>
	<title><![CDATA[GenomeRing: alignment visualization based on SuperGenome coordinates]]></title>
	<description><![CDATA[<p>The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational tools that can visualize genome alignments in a meaningful manner are needed to help researchers gain new insights into the underlying data. Such visualizations typically are either realized in a linear fashion as in genome browsers or by using a circular approach, where relationships between genomic regions are indicated by arcs. Both methods allow for the integration of additional information such as experimental data or annotations. However, providing a visualization that still allows for a quick and comprehensive interpretation of all important genomic variations together with various supplemental data, which may be highly heterogeneous, remains a challenge.</p>
<p>More at https://academic.oup.com/bioinformatics/article/28/12/i7/268598/GenomeRing-alignment-visualization-based-on</p><p>Address of the bookmark: <a href="http://it.informatik.uni-tuebingen.de/?page_id=185" rel="nofollow">http://it.informatik.uni-tuebingen.de/?page_id=185</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30658/srf-bioinformatics-at-jnu</guid>
  <pubDate>Tue, 24 Jan 2017 07:34:35 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF Bioinformatics at JNU]]></title>
  <description><![CDATA[
<p>School of Life Sciences <br />Jawaharlal Nehru University <br />New Delhi 110067</p>

<p>Positions available</p>

<p>Applications were invited from for the following posts in an industry sponsored project. The project entitled "OsHK3b technology and Know How", valid for a period upto February, 2018.</p>

<p>Post 3: Senior Research Fellow (Computational Biologist / Metabolic engineering)</p>

<p>Salary: As per DBT rule.</p>

<p>Duration: All the above posts are purely temporary and liable to be terminated at any time without prior notice or ceased/withdrawn by the funding agency.</p>

<p>Age limit: The upper age limit for SRF shall be 32 years, which is relaxed upto 5 years in the case of candidates belonging to Schedule Castes/Schedule Tribes, Women, Physically Handicapped and OBC applicants.</p>

<p>Essential Qualifications: Masters/B Tech/Mtech in Basic Sciences with at least 2yrs of research experience in Bioinformatics/Computational Biology related to Database /portal building &amp; maintenance, high throughput data handling and analysis etc. For M.Sc/B.Tech, Published paper in peer-reviewed Journal and for M.Tech, thesis submission in computational biology is a must. Selection preference will be given to candidates with a good knowledge of Python and/or R. Knowledge of JAVA will also get a special consideration.</p>

<p>Desired Skills: Will be expected to manage ongoing research activities in the project, interact with Experimental group, manage the project data analysis, prepare file reports and associated project work etc. Familiarity with plant systems biology and genomics /metabolite resources related to plant metabolomics is desirable.</p>

<p>1. The post applied for must be clearly written on the Envelope containing the application <br />2. Applications received after last date shall not be entertained, School will not be responsible for any postal delay. <br />3. No application will be accepted via hand delivery or via e-mail. Please send printed &amp; signed applications with detailed CV on or before 31st January, 2017 by post to the following address:</p>

<p>Prof. Ashwani Pareek <br />(Project Investigator) <br />Stress Physiology and Molecular Biology Laboratory (Room No-413), <br />School of Life Sciences, <br />Jawaharlal Nehru University, <br />New Delhi, India – 110067 <br />Email: ashwanipareek@gmail.com</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30698/itol-interactive-tree-of-life</guid>
	<pubDate>Tue, 31 Jan 2017 05:56:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30698/itol-interactive-tree-of-life</link>
	<title><![CDATA[iTOL: interactive Tree Of Life]]></title>
	<description><![CDATA[<p><strong>Interactive Tree Of Life</strong><span>&nbsp;is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees can be exported to several graphical formats, both bitmap and vector based.</span></p>
<p><img src="http://itol.embl.de/img/home/ex3.png" alt="image" style="border: 0px;"><br><span>There are several pre-computed trees available for display, including the main Tree Of Life, described in&nbsp;</span><a href="http://www.ncbi.nlm.nih.gov/pubmed/16513982">Ciccarelli, et al., 2006</a><span>. In addition to the precomputed trees, users can upload and display personal trees and data, using the 'Data upload' page or through a personal user account.</span></p><p>Address of the bookmark: <a href="http://itol.embl.de/" rel="nofollow">http://itol.embl.de/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30829/mercator</guid>
	<pubDate>Mon, 06 Feb 2017 04:20:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30829/mercator</link>
	<title><![CDATA[Mercator]]></title>
	<description><![CDATA[<p><span>Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows:</span></p>
<ul>
<li>For each genome, obtain a set of exon annotations. These annotations can be a combination of both exon predictions (e.g. Genscan) and annotations that have been experimentally verified (e.g. RefSeq). Ideally, we would like to have these annotations be as sensitive as possible. Specificity is not a concern, as incorrect annotations are not likely not have significant alignments with other gene annotations.</li>
<li>Compare all exons against all exons in other genomes and record significant alignments between exons. Currently, we use&nbsp;<a href="https://www.biostat.wisc.edu/~cdewey/mercator/#refBLAT">BLAT</a>&nbsp;to do this all-vs-all comparison with alignments being performed in protein space.</li>
<li>Construct a graph with each vertex corresponding to a exon and edges between vertices whose corresponding exons have significant alignments.</li>
<li>Identify cliques in this graph. These cliques are potential anchors to be used in the map.</li>
<li>Starting with the largest cliques (those that have exons in all or most of the genomes), join neighboring (adjacent in genomic coordinates, in each genome) cliques to form&nbsp;runs. Smaller cliques that are inconsistent with runs formed by larger cliques are filtered out. After the smallest cliques have been considered, cliques that are not part of a run are discarded.</li>
<li>The extents of each run in each genome are outputted as orthologous segments. The cliques from each run are used to output the exact genomic coordinates of anchors within each orthologous segment. These anchors can be used by genomic alignment programs (such as&nbsp;<a href="https://www.biostat.wisc.edu/~cdewey/mercator/#refMAVID">MAVID</a>) to do a detailed alignment of each orthologous segment.</li>
</ul>
<p>https://www.biostat.wisc.edu/~cdewey/mercator/</p><p>Address of the bookmark: <a href="https://www.biostat.wisc.edu/~cdewey/mercator/" rel="nofollow">https://www.biostat.wisc.edu/~cdewey/mercator/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30889/phd-program-in-computer-science-at-university-of-essex</guid>
  <pubDate>Sat, 11 Feb 2017 13:11:36 -0600</pubDate>
  <link></link>
  <title><![CDATA[PhD program in Computer Science at University of Essex]]></title>
  <description><![CDATA[
<p>As part of the PhD program in Computer Science at University of Essex, I am looking for a PhD student in computational and synthetic biology.<br />The ideal candidate is interested in designing new biological design automation methods for genome scale projects and/or network modelling of genomic, transcriptomic and proteomic data.<br />Candidates interested in developing optimization algorithms for biological problems are encouraged to apply as well.<br />A summary of the research work in the lab can be found on o this page.</p>

<p>Candidates interested in the position should contact me in advance by email to: g.stracquadanio@essex.ac.uk</p>

<p>The deadline for the application is 28/02/2017; info about the application can be found on the Essex CSEE website.</p>
]]></description>
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