<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/27113?offset=1620 https://bioinformaticsonline.com/bookmarks/view/30027/dbt-india Sun, 04 Dec 2016 22:30:37 -0600 https://bioinformaticsonline.com/bookmarks/view/30027/dbt-india <![CDATA[DBT India]]> Latest announcement on DBT India. 

Calls

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Address of the bookmark: http://www.dbtindia.nic.in/out-reach/latest-announcements/

]]> Jit https://bioinformaticsonline.com/bookmarks/view/30153/e-mem-efficient-computation-of-maximal-exact-matches Thu, 15 Dec 2016 09:30:43 -0600 https://bioinformaticsonline.com/bookmarks/view/30153/e-mem-efficient-computation-of-maximal-exact-matches <![CDATA[E-MEM: Efficient computation of Maximal Exact Matches]]> E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. 

E-MEM source code

The source code can be downloaded here. 

If you use E-MEM, please cite:

  • N. Khiste, L. Ilie, E-MEM: Efficient computation of Maximal Exact Matches for very large genomes, Bioinformatics 31(4) (2015) 509 -- 514.

For any questions, please contact Lucian Ilie: ilie@uwo.ca 

Address of the bookmark: http://www.csd.uwo.ca/~ilie/E-MEM/

]]> Jit https://bioinformaticsonline.com/researchlabs/view/30245/venkatesh-lab Tue, 20 Dec 2016 04:38:01 -0600 <![CDATA[Venkatesh Lab]]> We are using a comparative genomics approach to better understand the structure, function and evolution of the human genome. Our group is one of the pioneers in the field of comparative genomics. We proposed the compact genome of the fugu (Takifugu rubripes) as a model vertebrate genome in 1993 (Nature 366: 265-268, 1993) and determined its whole genome sequence in 2002 (Science 297: 1301-1310, 2002).

More at
https://zfin.org/ZDB-LAB-110408-1
http://www.imcb.a-star.edu.sg/php/venkatesh.php

]]> https://bioinformaticsonline.com/bookmarks/view/30336/finding-patterns-in-biological-sequences Thu, 22 Dec 2016 10:30:49 -0600 https://bioinformaticsonline.com/bookmarks/view/30336/finding-patterns-in-biological-sequences <![CDATA[Finding Patterns in Biological Sequences]]> In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is available through http://genetics.uwaterloo.ca/∼tvinar/cs798g/motif.

Address of the bookmark: http://engr.case.edu/li_jing/papers/00798gpattern.pdf

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