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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27216?offset=450</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29217/bioinformatics-openings-at-sri-venkateswara-college-university-of-delhi</guid>
  <pubDate>Tue, 20 Sep 2016 05:43:24 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics openings at Sri Venkateswara College, University of Delhi]]></title>
  <description><![CDATA[
<p>Bioinformatics center</p>

<p>Sri Venkateswara College (University of Delhi)</p>

<p>New Delhi- 110021</p>

<p>1. Junior Research Fellow (1 Post)</p>

<p>Applications are invited for the post of Junior Research Fellow (JRF) under DST funded project which is purely temporary and is strictly for project duration only.</p>

<p>Title of project</p>

<p>No. of post</p>

<p>Remuneration (Rs.)</p>

<p>“Computational assisted Design and Synthesis of Novel Antimalarial Agents Embodying Structural Diversity Suitable for Protease Inhibitors”</p>

<p>(One)</p>

<p>Fellowship and HRA as per DST guidelines</p>

<p>Qualification</p>

<p>Post Graduate Degree in Basic Science (M.Sc./M.Tech in Bioinformatics/Biophysics) from a recognized University in India or abroad with at least 55% marks with NET qualification or Graduate Degree in Professional Course with NET Qualification or Post Graduate Degree in Professional Course.</p>

<p>Desirable</p>

<p>Fair knowledge of Computer Aided Drug Designing (CADD), Protein Structure modeling, molecular docking, and simulations are preferable.</p>

<p>2. Traineeship (1 Post)</p>

<p>Applications are invited for the position of traineeship in DBT-BTISnet funded Bioinformatics Infrastructure Facility (BIF) to carry out project work in the area of Bioinformatics.</p>

<p>Qualification</p>

<p>Applicant should be possess PG degree/PG diploma in Bioinformatics for traineeship. The traineeship is awarded for a period of six months from the date of joining and is not extendable. The selected candidates are entitled to receive a stipend of Rs. 8000/- per month (consolidate) for a period of 6 months.</p>

<p>=====================================================================</p>

<p>3. Studentship (1 Post)</p>

<p>Applications are invited for the position of Studentship in DBT-BTISnet funded Bioinformatics Infrastructure Facility (BIF) to carry out project work in the area of Bioinformatics.</p>

<p>Qualification</p>

<p>Candidates pursuing the Final Year of Post Graduate Degree in Basic Science (M.Sc.) or Post Graduate/ Graduate Degree in Professional Course (M.Tech/B.Tech) in Bioinformatics from a recognized University in India or abroad. The selected candidates are entitled to receive a stipend of Rs. 8000/- per month (consolidate) for a period of 6 months.</p>

<p>How to Apply?</p>

<p>Applicants are required to send applications on plain paper, stating the name, address, date of birth, educational qualification, experience and Institute, along with attested photocopies of mark sheets and certificates etc. by September 20, 2016 to:</p>

<p>The Coordinator</p>

<p>Bioinformatics Center, Sri Venkateswara College</p>

<p>Benito Juarez Road, Dhaula Kuan, New Delhi- 110021</p>

<p>Applications may also be sent by email to contact@bic-svc.ac.in. Strictly mention "Application for JRF, Traineeship or Studentship" in the subject line as the case may be.</p>

<p>Short listed candidates will be called for an interview. Canvassing in any form will be a disqualification. No TA/DA will be paid either for attending the interview or joining the post.</p>

<p>For more details visit our lab webpage: http://www.bic-svc.ac.in</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</guid>
	<pubDate>Sat, 01 Oct 2016 15:04:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</link>
	<title><![CDATA[COSMIC]]></title>
	<description><![CDATA[<p>The accurate description and annotation of structural variants can be complex. &nbsp;This is due to the different resolution that variants are reported from traditional&nbsp;cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple&nbsp;rearrangements in a single area of the genome can make cataloguing and interpreting&nbsp;their effects challenging.&nbsp;</p>
<p>The Rearrangement Overview page describes the one or more breakpoints which make up a structural&nbsp;variant. A breakpoint is defined as a region or point where the sample sequence has altered&nbsp;from the reference sequence. Minimum interpretation is made of this data. One variant event&nbsp;can consist of one or multiple breakpoints. The Syntax (shown above the table) gives a detailed description of the variant and its location &nbsp;(e.g. chr11:g.36585230_76606619del, a deletion of&nbsp;roughly 40Mb on chromosome 11). Syntax is based on HGVS mutation nomenclature recommendations&nbsp;[http://www.hgvs.org/rec.html].&nbsp;</p>
<p>http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</p><p>Address of the bookmark: <a href="http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview" rel="nofollow">http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/29652/bioistats-ppt</guid>
	<pubDate>Tue, 08 Nov 2016 07:09:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/file/view/29652/bioistats-ppt</link>
	<title><![CDATA[Bioistats PPT]]></title>
	<description><![CDATA[<p>Basics concepts of&nbsp;Probability: The Study of Randomness</p><p>Biostatistics is the application of statistics to a wide range of topics in biology. The science of biostatistics encompasses the design of biological experiments, especially in medicine, pharmacy, agriculture and fishery; the collection, summarization, and analysis of data from those experiments; and the interpretation of, and inference from, the results. A major branch of this is medical biostatistics, which is exclusively concerned with medicine and health.</p>]]></description>
	<dc:creator>Jit</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/29652" length="1663809" type="application/pdf" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</guid>
	<pubDate>Wed, 09 Nov 2016 16:23:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</link>
	<title><![CDATA[Comparative genomics educational material and papers bookmarks]]></title>
	<description><![CDATA[<p><span>Alignment of the porcine genome against seven other mammalian genomes (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Information</a><span>) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The number of porcine EBRs </span><span>is comparable to the number of bovine-lineage-specific EBRs (100) reported earlier using a slightly lower resolution (500</span><span><span>&thinsp;</span></span><span>kilobases (kb)), indicating that both lineages evolved with an average rate of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl ancestor ~60</span><span><span>&thinsp;</span></span><span>Myr ago</span><sup><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#ref2" title="Meredith, R. W. et al. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 334, 521-524 (2011)">2</a></sup><span>. This rate compares to ~1.9 rearrangements per million years within the primate lineage (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Table 11</a><span>). A total of 20 and 18 cetartiodactyl EBRs (shared by pigs and cattle) were detected using the pig and human genomes as a reference, respectively.</span></p><p>Address of the bookmark: <a href="http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html" rel="nofollow">http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29849/ra-bioinformatics-at-national-institute-of-cancer-prevention-research-icmr</guid>
  <pubDate>Thu, 17 Nov 2016 04:11:09 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NATIONAL INSTITUTE OF CANCER PREVENTION &amp; RESEARCH (ICMR)]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF CANCER PREVENTION &amp; RESEARCH (ICMR)</p>

<p>Noida 201301 (U.P)</p>

<p>Applications are invited upto 21.11.2016 from interested candidates as per details available on NICPR website (www.nicpr.res.in)/ ICMR website (www.icmr.nic.in) to fill up following temporary position in the time bound DHR Project entitled “Next generation EGFR inhibitor identification using ligand based QSAR technique” under Dr. Subhash M. Agarwal, Scientist-D, Division of Bioinformatics.</p>

<p>Research Assistant (One)</p>

<p>Rs.27000/- p.m. (Fixed/temporary)</p>

<p>Essential: M.Sc. in Bioinformatics or related field.</p>

<p>Desirable: Experience in QSAR and structure based drug designing.</p>

<p>More Info : www.icmr.nic.in/icmrnews/NICPR_Advertisement%20for%20RA.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30198/faculty-at-indian-institute-of-science-education-and-research-berhampur</guid>
  <pubDate>Mon, 19 Dec 2016 03:34:26 -0600</pubDate>
  <link></link>
  <title><![CDATA[Faculty at Indian Institute of Science Education and Research Berhampur]]></title>
  <description><![CDATA[
<p>Advt. No: IISERBPR/DoFA/2016/2</p>

<p>Advertisement for Faculty Positions</p>

<p>The IISER Berhampur, an Institute of national importance, established through an act of Parliament is an autonomous organization under the Ministry of HRD, Govt. of India, to promote quality education and cutting edge research in basic sciences and to provide a platform for the faculty to engage in high quality education, at undergraduate and postgraduate levels. The Institute invites applications for faculty positions at the level of Assistant Professor (C) /Assistant Professor in the following disciplines:</p>

<p>1. Biological Sciences</p>

<p>2. Chemistry</p>

<p>3. Computer Sciences</p>

<p>4. Mathematics</p>

<p>5. Physics</p>

<p>Only hard copy of application in the prescribed format, via Speed Post should be sent to the Dean, Faculty Affairs, IISER Berhampur, Industrial Training Institute (ITI) Berhampur, Engineering School Road, Berhampur - 760 010, Ganjam District, Odisha, before 1700 hrs., December 30, 2016.</p>

<p>http://www.iiserbpr.ac.in</p>

<p>More Info : http://www.iiserbpr.ac.in/vacancies/Advertisement%20for%20Faculty%20Positions%20at%20IISER%20Berhampur.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2791/ncbi-psi-blast-tutorial</guid>
	<pubDate>Fri, 23 Aug 2013 02:25:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2791/ncbi-psi-blast-tutorial</link>
	<title><![CDATA[NCBI PSI-BLAST Tutorial]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/T3kHEieyylk" frameborder="0" allowfullscreen></iframe>http:--www.biotechnology.jhu.edu-
Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the
Basic Local Alignment Search tool and will protein and DNA sequences that
are related to a sequence that the user provides.]]></description>
	
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30336/finding-patterns-in-biological-sequences</guid>
	<pubDate>Thu, 22 Dec 2016 10:30:49 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30336/finding-patterns-in-biological-sequences</link>
	<title><![CDATA[Finding Patterns in Biological Sequences]]></title>
	<description><![CDATA[<p>In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is available through http://genetics.uwaterloo.ca/&sim;tvinar/cs798g/motif.</p><p>Address of the bookmark: <a href="http://engr.case.edu/li_jing/papers/00798gpattern.pdf" rel="nofollow">http://engr.case.edu/li_jing/papers/00798gpattern.pdf</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30459/prodigal-prokaryotic-dynamic-programming-genefinding-algorithm</guid>
	<pubDate>Thu, 29 Dec 2016 03:26:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30459/prodigal-prokaryotic-dynamic-programming-genefinding-algorithm</link>
	<title><![CDATA[Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)]]></title>
	<description><![CDATA[<p><span>Prodigal (</span><strong>Pro</strong><span>karyotic&nbsp;</span><strong>Dy</strong><span>namic Programming&nbsp;</span><strong>G</strong><span>enefinding&nbsp;</span><strong>Al</strong><span>gorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include:</span></p>
<ul>
<li><strong>Speed</strong>: Prodigal is an extremely fast gene recognition tool (written in very vanilla C). It can analyze an entire microbial genome in 30 seconds or less.</li>
<li><strong>Accuracy</strong>: Prodigal is a highly accurate gene finder. It correctly locates the 3' end of every gene in the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enables it to locate the translation initiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly).</li>
<li><strong>Specificity</strong>: Prodigal's false positive rate compares favorably with other gene identification programs, and usually falls under 5%.</li>
<li><strong>GC-Content Indifferent</strong>: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the&nbsp;<em>Pseudomonas aeruginosa</em>&nbsp;curated annotations.</li>
<li><strong>Metagenomic Version</strong>: Prodigal can run in metagenomic mode and analyze sequences even when the organism is unknown.</li>
<li><strong>Ease of Use</strong>: Prodigal can be run in one step on a single genomic sequence or on a draft genome containing many sequences. It does not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own.</li>
<li><strong>Open Source</strong>: Prodigal source code is freely available under the General Public License.</li>
</ul>
<p>&nbsp;</p>
<div style="text-align: center;"><strong>Download the latest version of Prodigal at&nbsp;<a href="http://github.com/hyattpd/prodigal/releases/">the Prodigal github page.</a></strong>&nbsp;<br>or&nbsp;<br><strong>Browse the&nbsp;<a href="http://github.com/hyattpd/prodigal/wiki">wiki documenation.</a></strong>&nbsp;</div><p>Address of the bookmark: <a href="http://prodigal.ornl.gov/" rel="nofollow">http://prodigal.ornl.gov/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30680/easybuild</guid>
	<pubDate>Fri, 27 Jan 2017 16:00:43 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30680/easybuild</link>
	<title><![CDATA[EasyBuild]]></title>
	<description><![CDATA[<p><a href="https://github.com/hpcugent/easybuild">EasyBuild</a><span>&nbsp;is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.</span><br><span>A full list of supported software packages is available&nbsp;</span><a href="http://easybuild.readthedocs.io/en/latest/version-specific/Supported_software.html">here</a><span>.</span></p><p>Address of the bookmark: <a href="https://hpcugent.github.io/easybuild/" rel="nofollow">https://hpcugent.github.io/easybuild/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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