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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27277?offset=640</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42227/two-faculty-positions-at-national-taiwan-university-taipei-taiwan</guid>
  <pubDate>Thu, 22 Oct 2020 04:53:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Two Faculty Positions at National Taiwan University, Taipei, Taiwan]]></title>
  <description><![CDATA[
<p>The Department of Agronomy at National Taiwan University, Taipei, Taiwan,<br />invites applications for two full-time faculty positions beginning August<br />1, 2021 at the rank of Assistant Professor, Associate Professor or<br />Professor in Biometry and Bioinformatics and Plant Breeding and Genetics,<br />respectively.</p>

<p>A qualified candidate should hold a Ph.D. in a relevant field including<br />Agronomy, Statistics, Bioinformatics, Plant Breeding, Plant Genetics or<br />Quantitative Genetics. For the position in Biometry and Bioinformatics, the<br />applicants capable of teaching fundamental statistics/bioinformatics<br />courses or with experience in crop science are preferable; for Plant<br />Breeding and Genetics, the applicants capable of teaching fundamental plant<br />breeding courses, with experience in crop breeding, or training in<br />quantitative genetics are preferred.</p>

<p>The application package should include two letters of reference and five<br />printed copies of the following documents (1) curriculum vitae, (2)<br />publication list, (3) undergraduate and graduate transcripts if applying<br />for the Assistant Professorship, (4) a photocopy of the Ph.D. diploma, (5)<br />teaching plan and course outline or syllabus (6) research proposal, (7) a<br />cover letter indicating the rank to apply, and one representative original<br />research article which was published by the applicant being the 1st or<br />corresponding author in an SCI peer-reviewed journal within 5 years (after<br />August 1, 2016); a copy of doctoral dissertation can be the representative<br />article if applying for the Assistant Professorship; (8) reprints of the<br />selected publications published within 7 years (after August 1, 2014).</p>

<p>The application package should mail to the Chair, Dr. Li-yu Daisy Liu<br />(lyliu@ntu.edu.tw), in the Department of Agronomy, National Taiwan<br />University, No. 1, Section 4, Roosevelt Road, Taipei 10617, Taiwan, before<br />December 15, 2020 for full consideration.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4081/csir-institute-of-genomics-integrative-biology</guid>
  <pubDate>Thu, 29 Aug 2013 05:22:03 -0500</pubDate>
  <link></link>
  <title><![CDATA[CSIR-INSTITUTE OF GENOMICS &amp; INTEGRATIVE BIOLOGY]]></title>
  <description><![CDATA[
<p>CSIR-INSTITUTE OF GENOMICS &amp; INTEGRATIVE BIOLOGY, Mall Road, Delhi 110007</p>

<p>POSITIONS OPEN FOR TEMPORARY RESEARCH PROJECT POSTS</p>

<p>(Date of interview 23rd September 2013 at 10:30 AM)</p>

<p>CSIR-Institute of Genomics &amp; Integrative Biology (IGIB), desires to engage qualified incumbents on purely temporary basis as detailed below:</p>

<p>Project Code/Title (Project Code BSC0123)</p>

<p>Genome dynamics in Cellular Organization, Differentiation and Enantiostasis (GENCODE)</p>

<p>Project Fellow<br />	<br />First Class M.Sc./M.Tech in bioinformatics/Human Genetics/Genomics</p>

<p>Rs. 16,000/- + 30 % HRA per month</p>

<p>Sr. Project Fellow	</p>

<p>First Class M.Sc./M.Tech in bioinformatics/Human Genetics/Genomics</p>

<p>With two years of experience in NGS data analysis.</p>

<p>Rs. 18,000/- + 30 % HRA per month</p>

<p>Age relaxation as per Govt. of India instructions.</p>

<p>Engagement is for the project and on behalf of the funding agency and the tenure shall be as mentioned above. The duration of the post is initially for One year or till the closing date of the project, whichever is earlier. Tenure may be extendable up to project duration. Contract may be terminated at any time by giving one-month notice by either side. The applicants will have no claim implicit or explicit for consideration against any CSIR/IGIB post.</p>

<p>How to Apply:</p>

<p>It is mandatory for eligible applicants to apply by both the processes as given below:</p>

<p>1.    Sending the resume in MS Word format directly to hrd@igib.res.in (Mentioning the Project Code-Post Code in the Subject Line of the email example:GAP0059-1)</p>

<p>2.    They also need to fill up proforma by clicking on the following link HR Online Form.</p>

<p>3.    Candidate cannot apply for more than two posts.</p>

<p>Last date of receiving application is 02-09-2013.</p>

<p>No application would be entertained with result awaited status or after due date.</p>

<p>The email will be sent to the short listed candidates.</p>

<p>No TA/DA will be paid to the candidates to attend the interview. The engagement shall be as per guidelines of CSIR/Funding agency. Candidates will have an option to give reply in Hindi.</p>

<p>Note: The shortlisted candidates, who will receive the email for interview, have to report at 09:00 AM on the day of interview along with any Photo ID card and original certificates for entry purpose. Entry will be closed by 10:00 AM.</p>

<p>More @ http://www.igib.res.in/sites/default/files/23092013.htm</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/42326/edanchin-lab</guid>
  <pubDate>Thu, 19 Nov 2020 08:00:07 -0600</pubDate>
  <link></link>
  <title><![CDATA[Edanchin Lab]]></title>
  <description><![CDATA[
<p>My main topics of interest are:</p>

<p>The impact of non tree-like evolution such as horizontal gene transfers and hybridization on species biology<br />Evolution and adaptation of animals in the absence of sexual reproduction and the underlying mechanisms<br />Genomic signatures of adaptation to a parasitic life-style</p>

<p>More at https://edanchin.org/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/3013/python-and-biopython-tutorial</guid>
	<pubDate>Fri, 23 Aug 2013 06:47:40 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/3013/python-and-biopython-tutorial</link>
	<title><![CDATA[Python and BioPython Tutorial]]></title>
	<description><![CDATA[<p>A quickstart tutorial that allows to become familiar with the Python language. The exercises expect knowledge of basic concepts of programming. A group of 2nd year computer science students with no previous Python knowledge required 60'-90' to complete the exercises. With about 3 hours time, the exercise is suitable for non-programmers as well.</p><p>Address of the bookmark: <a href="http://www.biotnet.org/training-materials/python-programmers" rel="nofollow">http://www.biotnet.org/training-materials/python-programmers</a></p>]]></description>
	<dc:creator>Manshi Raghubanshi</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42672/introduction-to-bioinformatics-and-computational-biology</guid>
	<pubDate>Mon, 25 Jan 2021 01:32:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42672/introduction-to-bioinformatics-and-computational-biology</link>
	<title><![CDATA[Introduction to Bioinformatics and Computational Biology]]></title>
	<description><![CDATA[<p><span>This is the course material for STAT115/215 BIO/BST282 at Harvard University.</span></p>
<p>Xiaole Shirley Liu (lead instructor)<br>Joshua Starmer<br>Martin Hemberg<br>Ting Wang<br>Feng Yue</p>
<p>Ming Tang<br>Yang Liu<br>Jack Kang<br>Scarlett Ge<br>Jiazhen Rong<br>Phillip Nicol<br>Maartin De Vries</p>
<p>We thank many colleagues in the community, who helped Dr.&nbsp;Liu in prepare the STAT115/215 BIO/BST282 course over the years.&nbsp;</p><p>Address of the bookmark: <a href="https://liulab-dfci.github.io/bioinfo-combio/" rel="nofollow">https://liulab-dfci.github.io/bioinfo-combio/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/3967/research-project-posts-for-csir-project-delhi</guid>
  <pubDate>Tue, 27 Aug 2013 04:31:41 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Project Posts for CSIR Project, Delhi]]></title>
  <description><![CDATA[
<p>Positions Open For Temporary Research Project Posts for CSIR Project, Delhi<br />CSIR is looking for bright young candidates to get involved in building algorithms and platforms for large biological data analyses in the areas of comparative genomics, computational workflows, disease association studies, simulating virtual organelles, etc. Anyone who fulfills the eligibility criteria mentioned below may appear for a walk-in interview on 3rd September 2013 at CSIR Headquarters, Anusandhan Bhawan, 2 Rafi Marg, Delhi – 110001.<br />you can go to link for details or download PDF</p>

<p>http://www.csir.res.in/External/Heads/aboutcsir/announcements/ProjectPost_130813.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/42809/bioinformatics-in-africa-part2-kenya</guid>
	<pubDate>Sat, 06 Feb 2021 13:23:54 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/42809/bioinformatics-in-africa-part2-kenya</link>
	<title><![CDATA[Bioinformatics in Africa: Part2 - Kenya]]></title>
	<description><![CDATA[<p>International Livestock Research Institute (ILRI):</p><p>Under&nbsp; &nbsp;a&nbsp; &nbsp;NEPAD&nbsp; &nbsp;initiative,&nbsp; &nbsp;the&nbsp; &nbsp;Biosciences&nbsp; &nbsp;Eastern&nbsp; &nbsp;and&nbsp; &nbsp;Central&nbsp; &nbsp;Africa&nbsp; &nbsp;(BECA)&nbsp; (www.biosciencesafrica.org) was established at ILRI. BECA consists of a hub, regional nodes, and&nbsp; other affiliated laboratories and partner institutes. A state of the art joint Bioinformatics Platform&nbsp; (www.becabioinfo.org), whose overall goal is to provide a coherent and powerful bioinformatics&nbsp; infrastructure for use by all scientists in East and central Africa. The Platform goal requires both&nbsp; physical and intellectual developments that together provide researchers with access to diverse&nbsp; infrastructure in a wide&shy;area network, thereby addressing four important aspects of bioinformatics:&nbsp;</p><p>1) Science: bioinformatics tools for data integration and visualization, standardization of data&nbsp; formats and data analysis strategies, and distribution of analysis tasks over local&shy; and widearea networks are in development;&nbsp;</p><p>2)&nbsp; Bioinformatics Support Facility: provides assistance and custom programming to projects&nbsp; and those unable to establish a bioinformatics support function intrinsic to their project due&nbsp; to shortage of qualified personnel or lack of funding;&nbsp;</p><p>3) Hardware Platform: provide a powerful high performance computing platform capable of&nbsp; handling the largest analysis needs for projects;&nbsp;</p><p>4) Bioinformatics Training for East and central African scientists: While many Web&shy;based&nbsp; tools are available to the wet&shy;lab researcher, the Web is not well suited for tasks beyond&nbsp; single&shy;sequence annotation. Researchers need to become productive in a server&shy;based Unix&nbsp; environment with its wealth of scripting and automation tools. Even at an entry&shy;level, this&nbsp; can be an intimidating task if proper guidance is not available.</p><p>International&nbsp;Centre&nbsp;of&nbsp;Insect&nbsp;Physiology&nbsp;and&nbsp;Ecology&nbsp;(ICIPE): ICIPE&rsquo;s&nbsp;research&nbsp;focus&nbsp;is&nbsp;on&nbsp;insect&nbsp;biology,&nbsp;in&nbsp;order&nbsp;to&nbsp;improve&nbsp;the&nbsp;wellbeing&nbsp;of&nbsp;the&nbsp;peoples&nbsp;of&nbsp;the&nbsp; tropics&nbsp;through&nbsp;insect&nbsp;science.&nbsp;There&nbsp;is&nbsp;a&nbsp;commitment&nbsp;to&nbsp;utilise&nbsp;contemporary&nbsp;science&nbsp;in&nbsp;order&nbsp;to&nbsp; limit&nbsp;the&nbsp;impact&nbsp;of&nbsp;disease&nbsp;vectors,&nbsp;and&nbsp;agricultural&nbsp;pests.&nbsp;The&nbsp;understanding&nbsp;of&nbsp;the&nbsp;mechanisms&nbsp; associated&nbsp;with&nbsp;behaviour&nbsp;(e.g.&nbsp;attraction&nbsp;and&nbsp;repellency)&nbsp;is&nbsp;crucial.&nbsp;ICIPE&nbsp;seeks&nbsp;to&nbsp;enhance&nbsp;its&nbsp; bioinformatics&nbsp;capacity&nbsp;in&nbsp;order&nbsp;to&nbsp;support&nbsp;data&nbsp;from&nbsp;various&nbsp;EST&nbsp;projects&nbsp;designed&nbsp;to&nbsp;gain&nbsp;insights&nbsp; into&nbsp;the&nbsp;insect&nbsp;ecology&nbsp;and&nbsp;plant&nbsp;pathogen&nbsp;interactions&nbsp;though&nbsp;studies&nbsp;of&nbsp;metabolic&nbsp;pathways&nbsp; associated&nbsp;with&nbsp;production&nbsp;of&nbsp;all&nbsp;elochemicals.&nbsp;</p><p>Long&shy;term training activities:</p><p>Kenyatta University: An introductory course in Bioinformatics is offers to MSc Biotechnology&nbsp; students. This comprises of 35 hours of lectures and practicals.</p><p>University of Nairobi: A centre for Biotechnology and Bioinformatics (CEBIB), which will offer&nbsp; postgraduate training (diplomas, MSc and PhD) in areas of biotechnology and bioinformatics has&nbsp; recently been launched. Other universities in Kenya, including Egerton, Maseno and the Jomo Kenyatta University of&nbsp; Agriculture and Technology offer introductory courses to undergraduates in biomedical sciences. In addition, under the BECA platform MSc and PhD fellowships are being made available for&nbsp; Bioinformatics students. ILRI is forging links with Universities in South Africa and the United&nbsp; Kingdom to provide access to courses and training material.&nbsp;</p><p>Research Interest and Activities:</p><p>The following are the present areas of research interest: 1. EST clustering 2. Genome sequencing and annotation 3. Functional genomics and proteomics (including key tropical pathogens) 4. Structural bioinformatics 5. Development of Bioinformatics Data Management Systems 6. Gene Mining 7. High Throughput Genotyping 8. Microarray data management and analysis 9. Metagenomics 10. Immunoinformatics 11. Host&shy;pathogen interaction 12. High performance computing and grid development 13. Parasite transfection technologies 14. Cell cycle regulation 15. Population genetics 16. Vector genomics 17. Drug, vaccine and diagnostic target discovery</p><p>More at&nbsp;Web&nbsp;site&nbsp;and&nbsp;links:</p><p>http://www.ilri.cgiar.org/</p><p>http://www.icipe.org/ &nbsp; &nbsp;</p><p>http://www.uonbi.ac.ke/cebib</p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials</guid>
	<pubDate>Thu, 29 Aug 2013 09:23:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials</link>
	<title><![CDATA[Bioinformatics Algorithm Demonstrations and Tutorials]]></title>
	<description><![CDATA[<p>Abstract</p>
<p>This project presents demonstrations of selected computer science algorithms important in&nbsp;bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsheets provide an&nbsp;interesting platform for demonstration of algorithms, since various steps of the calculations can be&nbsp;exposed in a manner that is easily comprehensible to users with little programming experience. The&nbsp;algorithms demonstrated include two approaches to approximate string matching (dynamic programming&nbsp;and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogenetic studies&nbsp;and microarray analysis of gene expression), a Naive Bayes Classifier for simulated microarray gene&nbsp;expression data, and a simple Neural Network. These demonstrations are designed to serve as&nbsp;instructional aids in bioinformatics courses.</p>
<p>Tutorial @&nbsp;http://www.cybertory.org/downloads/bae/BioinformaticsAlgorithmsInExcel.zip</p>
<p>One of the best resource for online bioinformatics learning is https://stepic.org/Bioinformatics-Algorithms-2 Enjoy the online learning.</p>
<p>Reference :&nbsp;cybertory</p>
<blockquote>
<p><span>" Please add your favourite bioinformatics algorithms and tutorial links below in the comment section, for the benefit of bioinformatics and computational biology community ".&nbsp;</span></p>
</blockquote><p>Address of the bookmark: <a href="http://www.cybertory.org/downloads/bae/BioinformaticsAlgorithmsExcelDoc.pdf" rel="nofollow">http://www.cybertory.org/downloads/bae/BioinformaticsAlgorithmsExcelDoc.pdf</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/42815/bioinformatics-in-africa-part7-tunisia</guid>
	<pubDate>Sat, 06 Feb 2021 21:25:09 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/42815/bioinformatics-in-africa-part7-tunisia</link>
	<title><![CDATA[Bioinformatics in Africa: Part7 - Tunisia]]></title>
	<description><![CDATA[<p>Institut Pasteur de Tunis (IPT):<br />The IPT is a research institution founded in 1883. IPT is under the supervision of the Ministry of &nbsp;Health and is part of the Universit&eacute; El Manar of Tunis (Ministry of high Education). The missions &nbsp;of the institute are: Public Health Laboratory activities (PHL), Research on infectious diseases, and &nbsp;R/D on vaccines. Research programs are mainly oriented towards local health problems such as &nbsp;leishmaniais, viral hepatitis, and scorpion venoms. The &nbsp; group &nbsp; of &nbsp; Bioinformatics &nbsp; and &nbsp; Modelling &nbsp; of &nbsp; the &nbsp; IPT &nbsp; is &nbsp; hosted &nbsp; by &nbsp; the &nbsp;Laboratoire &nbsp;d&rsquo;Immunopathologie Vaccinologie et G&eacute;n&eacute;tique Mol&eacute;culaire &nbsp;(LIVGM), and exists since the &nbsp;beginning of 2005. Its present research activities include: genome annotation, EST clustering and &nbsp;modelling of the host/parasite response to Leishmania infection. It consists of two senior scientists, &nbsp;two PhD students and one MSc student</p><p>Centre&nbsp;de&nbsp;Biotechnology&nbsp;de&nbsp;Sfax&nbsp;(CBS):<br />Bioinformatics&nbsp;activity&nbsp;started&nbsp;at&nbsp;CBS&nbsp;in&nbsp;2001&nbsp;with&nbsp;the&nbsp;setting&shy;up&nbsp;of&nbsp;a&nbsp;research&nbsp;and&nbsp;service&nbsp;unit&nbsp;of&nbsp; bioinformatics.&nbsp;This&nbsp;unit&nbsp;currently&nbsp;includes&nbsp;one&nbsp;senior&nbsp;researcher,&nbsp;one&nbsp;engineer&nbsp;and&nbsp;four&nbsp;Phd&nbsp; students.&nbsp;Activities&nbsp;include&nbsp;sequence&nbsp;annotation&nbsp;(service)&nbsp;and&nbsp;three&nbsp;research&nbsp;programs:&nbsp;ab&nbsp;initio&nbsp; prediction&nbsp;of&nbsp;short&nbsp;eukaryote&nbsp;genes,&nbsp;statistical&nbsp;modelling&nbsp;by&nbsp;Bayesian&nbsp;networks&nbsp;approach&nbsp;of&nbsp;signal&nbsp; transduction&nbsp;pathways&nbsp;and&nbsp;statistical&nbsp;analysis&nbsp;of&nbsp;human&nbsp;sequence&nbsp;variation&nbsp;data&nbsp;(haplotype&nbsp; reconstruction&nbsp;and&nbsp;linkage&nbsp;disequilibrium).&nbsp;Activities&nbsp;of&nbsp;the&nbsp;Bioinformatics&nbsp;unit&nbsp;could&nbsp;be&nbsp;found&nbsp;at&nbsp; the&nbsp;website:&nbsp;http://www.cbs.rnrt.tn/&nbsp;and&nbsp;the&nbsp;research&nbsp;activity&nbsp;report&nbsp;is&nbsp;available&nbsp;under&nbsp;request&nbsp;to&nbsp; Bioinformatics@cbs.rnrt.tn.&nbsp;Although&nbsp;the&nbsp;computing&nbsp;facilities&nbsp;are&nbsp;good,&nbsp;there&nbsp;is&nbsp;still&nbsp;a&nbsp;need&nbsp;for&nbsp; trained&nbsp;human&nbsp;resources&nbsp;to&nbsp;strengthen&nbsp;bioinformatics&nbsp;capacities&nbsp;at&nbsp;CBS,&nbsp;particularly&nbsp;in&nbsp;structural&nbsp; bioinformatics.</p><p>Web site and links: http://www.cbs.rnrt.tn</p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4162/4273%CF%80-bioinformatics-education-on-low-cost-arm-hardware</guid>
	<pubDate>Mon, 02 Sep 2013 07:02:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4162/4273%CF%80-bioinformatics-education-on-low-cost-arm-hardware</link>
	<title><![CDATA[4273π: Bioinformatics education on low cost ARM hardware]]></title>
	<description><![CDATA[<p>Are you teaching bioinformatics at universities and found it complicated by typical computer classroom settings. As well as running software locally and online, students should gain experience of systems administration. Hmm don't worry there is one new OS for the rescue. 4273<em>&pi;</em>, an operating system image for Raspberry Pi based on Raspbian Linux. It provides an attractive, general-purpose computing environment, within which the course 4273&pi; Bioinformatics for Biologists is embedded.<br /><br />Though far slower than current desktop and laptop computers, the Raspberry Pi is notably faster than the Cray 1 supercomputer, a marvel of computer speed in its day. The Raspberry Pi approach includes all the benefits of the laptop approach, above, but at lower cost. In addition, the Raspberry Pi is a new and exciting computer system, which in itself can add interest to the course.<br /><br />As the Raspbian operating system, Raspberry Pi firmware and hardware and 4273&pi; Bioinformatics for Biologists teaching material develop, further releases of 4273&pi; will be made available. It is anticipated that there will be a minimum of two releases per year during the next four years.</p><p>4273<em>&pi;</em> is a means to teach bioinformatics, including systems administration tasks, to undergraduates at low cost.</p><p>Descriptive paper @ http://www.biomedcentral.com/1471-2105/14/243</p><p>Image source: BMC Bioinformatics</p><p><img src="http://www.biomedcentral.com/content/download/figures/1471-2105-14-243-1.png" alt="image" style="border: 0px; border: 0px;"></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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