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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27279?offset=1300</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24462/icar-project-ra-position-institute-of-bioinformatics-iob-bangalore</guid>
  <pubDate>Tue, 22 Sep 2015 23:41:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[ICAR project RA position @ Institute of Bioinformatics (IOB) Bangalore]]></title>
  <description><![CDATA[
<p>Applications are invited for the post of Research Associate (RA) in the ICAR project on "Lactation stress associated postpartum anestrus SNP array in buffaloes". We are looking for a motivated candidate for handling Next Generation sequencing data analysis with a strong background in bioinformatics and programming.</p>

<p>The position is open for immediate appointment and available for two years and then extendable for additional one year. The applicant will be appointed as Research Associate based on qualifications as detailed below:</p>

<p>Research Associate:</p>

<p>-Master’s degree with bioinformatics with at least 2 years of research experience in Next Generation sequencing data analysis as evidence from Fellowship/ Associateship / Training / other engagements.</p>

<p>-Familiarity with bioinformatics tools, database development, programming skills</p>

<p>-Minimum 1 publication in any peer reviewed journal</p>

<p>Salary will be as per ICAR rules and guidelines. Application will be shortlisted based on CV, reference letters from mentors and telephonic interview. Candidates will be called for a personal interview at Bangalore before appointment. No travel expense will be provided for attending interview at Bangalore.</p>

<p>Interested candidates may send a Letter of Interest and CV by email to: keshav@ibioinformatics.org before September 29, 2015.</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24258/postdoctoral-fellowship-at-department-of-psychiatry-warneford-hospital-oxford</guid>
  <pubDate>Tue, 01 Sep 2015 05:24:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellowship at Department of Psychiatry, Warneford Hospital, Oxford]]></title>
  <description><![CDATA[
<p>Applications are invited for a postdoctoral research assistant to work in the Translational Neuroscience and Dementia Research Group (TNDRG) on a project using informatics approaches to understand and prevent dementia, specifically on the role of the immune system in Alzheimer’s. The post is for a fixed-term duration of 1 year.</p>

<p>Working with other members of the TNDRG you will analyse complex genomic and epidemiological datasets, evaluating which computational tools are most suitable. You will contribute to the generation of innovative tools for linking epidemiological and multilevel omics datasets, ensuring that computer programs are written in a form that other collaborators can use and expand.</p>

<p>You will have or be close to completion of a PhD in either: bioinformatics; neuroscience; machine learning; statistics; epidemiology; neurology; or other relevant field. You will have experience programming on either R, Matlab, Python, C++, Java or any other imperative, object oriented or functional language.</p>

<p>Please direct Informal enquiries to Dr Alejo Nevado-Holgado (alejo.nevado-holgado@psych.ox.ac.uk).</p>

<p>You will be required to upload a supporting statement explaining how you meet the selection criteria for the post, a CV, and details of two referees as part of your online application.</p>

<p>The closing date for applications is 12.00 midday on 2 September 2015. Interviews will be held on Tuesday 15 September 2015. </p>

<p>https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.jobspec?p_id=118696</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24328/walk-in-interview-for-srf-jrf-posts-at-junagadh-agricultural-university</guid>
  <pubDate>Tue, 08 Sep 2015 11:58:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University]]></title>
  <description><![CDATA[
<p>Job Description: Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University</p>

<p>Junagadh Agricultural University has given a recruitment notification to fill the posts of Senior, Junior Research Fellows in the establishment.</p>

<p>Name &amp; No: of Posts:</p>

<p>1. Senior Research Fellow: 05<br />2. Junior Research Fellow: 05</p>

<p>Title of the Projects under Senior Research Fellow:</p>

<p>1. Molecular mapping of important traits and their transfer through marker assisted selection in Groundnut and cotton<br />2. Aflatoxin and its management in groundnut at Saurashtra region of Gujarat.<br />3. Improvement in Agricultural Production through nanotechnological inventions at Junagadh.<br />4. Synthesis and Characterisation of chitosan based NPK-Nano fertilizers</p>

<p>Title of the Projects under Junior Research Fellow:</p>

<p>1. Improvement in Agricultural Production Through Nanotechnological Inventions at Junagadh.<br />2. Synthesis and Characterisation of chitosan based NPK-Nano fertilizers</p>

<p>Required Eligibility Criteria:</p>

<p>1. Senior Research Fellow:</p>

<p>Age Limit: Candidates age must be maximum 35 years<br />Educational Qualification: M.Sc in Nanotechnology/Biotechnology/Bioinformatics<br />Salary: Rs. 16,000/- + HRA for first and second year, Rs. 18,000/- + HRA during third year</p>

<p>2. Junior Research Fellow:</p>

<p>Age Limit: Candidates age must be maximum 30 years<br />Educational Qualification: B.Sc or M.Sc degree in the field of Nanotechnology/Biotechnology<br />Salary: Rs. 9,600/- , Rs. 14,400/- p.m</p>

<p>Eligible candidates may attend the walk-in-interview on 10-09-2015 with necessary certificates of testimonials</p>

<p>Click Here for Detailed Recruitment Notification<br />http://www.jau.in/attachments/Advt/BiotechSRFJRF.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24704/2-positions-on-the-evolutionary-analysis-of-biological-sequences-in-montpellier-france</guid>
  <pubDate>Mon, 28 Sep 2015 08:25:48 -0500</pubDate>
  <link></link>
  <title><![CDATA[2 positions on the evolutionary analysis of biological sequences in Montpellier - France]]></title>
  <description><![CDATA[
<p>The Methods and Algorithms for Bioinformatics (MAB) team at the LIRMM (computer science, robotics and microelectronics laboratory at the CNRS &amp; University of Montpellier, France) is looking for talented individuals to fill two postdoctoral positions.  We are seeking candidates with a strong background in computational evolutionary biology. The positions will start by the end of 2015.<br /> <br />The first of the positions (duration: 18-24 months), associated with the European VIROGENESIS project (http://www.kuleuven.be/english/research/EU/p/horizon2020/sc/sc1/Virogenesis), concerns the evolutionary analysis of viral sequences.  Topics include -- but are not limited to -- phylogenetic classification of metagenomic reads and the recombination history of viruses.<br /> <br />The second position (duration: 1 year), associated with the Institute for Computational Biology (IBC, http://www.ibc-montpellier.fr), concerns evolutionary analyses of large-scale genomic data -- including the inference of very large phylogenies, gene/species tree reconciliation, comparative genomics, phylogenetic network inference and verification, phylogeography, the use of phylogenies to study the evolution of characters.<br /> <br />A one thousand year old city, Montpellier is a thriving research community with a multitude of biology and biomedical research centers.  It is the fastest growing city in France where approximately one third of the population are students, and a wonderful location for outdoor activities (kite/wind surfing, sailing, river/sea kayaking, hiking and rock climbing).  The LIRMM is one of the most visible computer science laboratories in France.</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25147/pre-or-postdoctoral-research-fellowship-in-structural-bioinformatics-at-padova</guid>
  <pubDate>Thu, 05 Nov 2015 22:15:12 -0600</pubDate>
  <link></link>
  <title><![CDATA[Pre- or postdoctoral research fellowship in Structural Bioinformatics at Padova]]></title>
  <description><![CDATA[
<p>A research fellowship for a software developer is available at the BioComputing UP Laboratory, University of Padova (URL: http://protein.bio.unipd.it/).<br />A highly motivated and creative candidate is sought to work on structural bioinformatics. Specifically, the project entails the development of novel methods, tools and databases for the analysis of protein structures.</p>

<p>The BioComputing UP Laboratory, headed by Prof. Silvio Tosatto, is a dynamic group of a dozen people working on several aspects of prediction of protein structure &amp; function employing techniques at the intersection between biology, medicine, chemistry, physics &amp; computer science.<br />Our aim is to integrate the development of novel methods and their application to biologically relevant problems.</p>

<p>We are looking for candidates with a solid Bioinformatics background, programming experience (Python, C++ and/or Java) and good knowledge of molecular biology (protein structure/function). Good knowledge of statistics as well as experience in using database systems (MongoDB, MySQL and/or Postgres) is desirable. Candidates should have a degree with top marks, optionally hold a PhD, and be highly motivated to work on interdisciplinary research. Good knowledge of English, an open-minded spirit, being collaborative and creative are crucial.</p>

<p>The fellowship, which should start as soon as possible, is renewable and initially for one year. It will be commensurate to experience, can be extended depending on performance and may lead to a PhD degree. The successful candidate will be working full-time at the BioComputing UP Laboratory, University of Padova. Travel support for conferences and/or research visits abroad is provided.<br />To apply, please send your CV, with a motivation letter and brief description of your research background as well as the names of two (or more) references to: biocomp@bio.unipd.it. </p>

<p>Start date: As soon as possible</p>

<p>Duration: 1 year, renewable</p>

<p>Salary on grant: Commesurate to experience</p>

<p>Contact Person (Referent): Silvio Tosatto</p>

<p>Ref. E-Mail: biocomp@bio.unipd.it</p>

<p>Tel: +39 049 827 6269<br />Fax: +39 049 827 6260</p>

<p>Group Web Page: http://protein.bio.unipd.it/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26587/last</guid>
	<pubDate>Wed, 09 Mar 2016 14:27:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26587/last</link>
	<title><![CDATA[LAST]]></title>
	<description><![CDATA[<p style="text-align: center;"><img src="http://last.cbrc.jp/lastwebfig.png" alt="sketch of  similar regions in sequences" style="border: 0px;"></p>
<p>LAST can:</p>
<ul>
<li>Handle <strong>big</strong> sequence data, e.g:
<ul>
<li>Compare two vertebrate genomes</li>
<li>Align billions of DNA reads to a genome</li>
</ul>
</li>
<li>Indicate the <a href="http://lastweb.cbrc.jp/about.html">reliability</a> of each aligned column.</li>
<li>Use sequence quality data <a href="http://nar.oxfordjournals.org/content/38/7/e100.abstract">properly</a>.</li>
<li>Compare DNA to proteins, with frameshifts.</li>
<li>Compare PSSMs to sequences</li>
<li>Calculate the likelihood of chance similarities between random sequences.</li>
<li>Do split and spliced alignment.</li>
<li><a href="http://last.cbrc.jp/doc/last-train.html">Train</a> alignment parameters for unusual kinds of sequence (e.g. nanopore).</li>
</ul><p>Address of the bookmark: <a href="http://last.cbrc.jp/" rel="nofollow">http://last.cbrc.jp/</a></p>]]></description>
	<dc:creator>Archana Malhotra</dc:creator>
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