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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27321?offset=40</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</guid>
	<pubDate>Sat, 23 Jan 2021 06:07:50 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</link>
	<title><![CDATA[Common Bioinformatics Interview Questions !]]></title>
	<description><![CDATA[<p>The possibility of an interview for a bioinformatics position in the life sciences may be very disquieting, but the same concerns emerge time and again in my experience. So, it is exceedingly worthwhile to plan for future bioinformatics interview questions. Doing this will really give you the advantage in obtaining the position.</p><p>The following 5 questions are those that I have heard many times during the job-search process. There is no reason for not planning responses in such situations.</p><p><strong>1. Tell Us About Yourself</strong><br />This is a very typical opener in interviews. It's a perfect question to ask, and getting something planned will really help you concentrate and ease in the conversation. However, you need to make sure that your response is applicable to the job you're interviewing.<br />It's probably better to keep your answer professional. Try to include these in the answer as well: where did your love of science and bioinformatics come from? How the heck did you end up in this field? Why programming and scripting ?</p><p><strong>2. What is your plan for your bioinformatics career? / How do you look at yourself in five years? / How are your personal objectives to accomplish these goals / What are the plan for your research fundings ?</strong></p><p>Your CV/resume has already impressed the selection panel if you have been invited for an interview. The questions from the bioinformatics interview team provide an incentive for you to market yourself and illustrate the work in question with the most appropriate knowledge.</p><p><strong>3. What do you understand about the job description/What would your suggested research path be if you were a successful candidate?</strong><br />Summarize the specifics of the advertised bioinformatics position in your own words. Follow on with some suggestions of how you want to extend your research and create your own projects within the community.</p><p><strong>4. Will you work as a group or do you want to work on your own?</strong><br />This requirement can vary from jobs to job, so when addressing, be alert. A company/research PI may need a bioinformatician that is able to work on a single project autonomously, or they may need a person who can help direct and organize a team. In your response, refer to the job description.</p><p><strong>5. What particular methods have you used to date with your experiments?</strong><br />You might have experience with all the laboratory techniques described in the job description, but stress the ones you highly experienced with. Highlight your professional abilities and stress that you are extremely capable of mastering new techniques with others ...</p><p>At the end of the day, remember that you're questioning the jury as well as they're interviewing you. You will ought to think of any questions you would like the interview panel to pose. This indicates that you have done your homework and serious about the position.</p><p>All the best for your future job interview.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/11611/ten-recommendations-for-creating-usable-bioinformatics-command-line-software</guid>
	<pubDate>Sun, 08 Jun 2014 10:06:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/11611/ten-recommendations-for-creating-usable-bioinformatics-command-line-software</link>
	<title><![CDATA[Ten recommendations for creating usable bioinformatics command line software]]></title>
	<description><![CDATA[<p><span>Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten recommendations for command line software author&rsquo;s tools to follow, which I believe would greatly improve the uptake and usability of their products, waste less user&rsquo;s time, and improve the quality of scientific analyses.</span></p><p>Address of the bookmark: <a href="http://www.gigasciencejournal.com/content/2/1/15?utm_content=buffer25ee0&amp;utm_medium=social&amp;utm_source=twitter.com&amp;utm_campaign=buffer" rel="nofollow">http://www.gigasciencejournal.com/content/2/1/15?utm_content=buffer25ee0&amp;utm_medium=social&amp;utm_source=twitter.com&amp;utm_campaign=buffer</a></p>]]></description>
	<dc:creator>RAJESH DETROJA</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25410/srfjrf-bioinformatics-at-ciari</guid>
  <pubDate>Fri, 04 Dec 2015 00:10:09 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF/JRF Bioinformatics at CIARI]]></title>
  <description><![CDATA[
<p>Realizing the importance of Island Agriculture to meet the requirements of local population and tourists, Indian Council of Agricultural research (ICAR) established Central Island Agricultural Research Institute, Port Blair on June 23rd, 1978 by merging different regional research stations of ICAR institutes located in Islands. The ultimate aim of CIARI is the developments of island agricultural production technologies which utilizes the strengths of the island and convert the constraints in opportunities, without causing any ill effect to the fragile ecosystem of the island.The institute has made tremendous progress in the Agriculture development of the islands during the last three decades. Keeping in view the natural resources of the islands diversity, fragile ecosystem, research program would be designed to maximize the productivity without disturbing to the islands ecosystem to provide better and decent livelihood and as a source of revenue and resource generation. Research and development in Agriculture sector should cover all disciplines in order to have a balanced progress in all disciplines for the overall benefits of the farmers of these islands.</p>

<p>Position I</p>

<p>Job Title : Junior Research Fellow</p>

<p>No. of Posts : One</p>

<p>Project : Establishment of sub distributed information centre</p>

<p>Qualification : M.Sc in Basic Science with NET or B.Sc in professional course with NET or M.Sc in professional course</p>

<p>Desired Experience : Experience in Bioinformatics and molecular biology</p>

<p>Payscale : Rs. 25000 per month</p>

<p>Age Limit : Upto 35 for men and 40 for women with 5 years relaxation to SC/ST and 3 years relaxation for OBC.</p>

<p>Position II</p>

<p>Job Title : Traineeship</p>

<p>No. of Posts : One</p>

<p>Project : Establishment of sub distributed information centre</p>

<p>Qualification : B.Sc Bioinformatics /Biotechnology / Life Science / Computer Science</p>

<p>Desired Experience : Experience in Bioinformatics and molecular biology</p>

<p>Payscale : Rs. 8000 per month</p>

<p>Age Limit : Upto 35 for men and 40 for women with 5 years relaxation to SC/ST and 3 years relaxation for OBC.</p>

<p>Position III</p>

<p>Job Title : Studentship</p>

<p>No. of Posts : Two</p>

<p>Project : Establishment of sub distributed information centre</p>

<p>Qualification : B.Sc Bioinformatics /Biotechnology / Life Science / Computer Science</p>

<p>Desired Experience : Experience in Bioinformatics and molecular biology</p>

<p>Payscale : Rs. 8000 per month</p>

<p>Age Limit : Upto 35 for men and 40 for women with 5 years relaxation to SC/ST and 3 years relaxation for OBC.</p>

<p>How to Apply : Candidates who meet the requirements can attend the walk in interview at CIARI,Port Blair on 09.12.2015 10.30AM.</p>

<p>http://icar-ciari.res.in/employment/9-12-15.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25674/post-doc-position-at-labgem-evry-france</guid>
  <pubDate>Fri, 11 Dec 2015 06:24:00 -0600</pubDate>
  <link></link>
  <title><![CDATA[Post-doc position at LABGeM - Evry, France]]></title>
  <description><![CDATA[
<p>The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is developing integrated approaches which combines bioinformatics methods based (i) on genomic and metabolic contexts, (ii) on an orignal metabolic network representation and (iii) on a structural classification of active sites for the discovery of new metabolic enzymatic activities.</p>

<p>We are hiring a post-doctoral fellow for the development of innovative bioinformatics methods to explore metabolic networks and enzyme families. These methods will be based on protein family analysis and graph approaches combining genomic and metabolic contexts.</p>

<p>For more details, please see this link : http://goo.gl/tHQOqk</p>

<p>Qualifications:<br />PhD degree in bioinformatics or computational biology<br />- Previous experience in network or protein family analysis<br />- Programming skills (C/C++, Python, Java) and in common biostatistical analyses<br />- Team player, innovative and creative thinking, good oral and written communication skills</p>

<p>24 months, Post Doctoral position<br />Start: from March 2016<br />Place: CEA, Genoscope UMR8030, LABGeM (Laboratory of Bioinformatics Analyses for Genomics and Metabolism), Evry, France<br />Contact: David Vallenet, vallenet@genoscope.cns.fr<br />Publications: https://scholar.google.com/citations?user=rJNPLSAAAAAJ<br />Remuneration per month: from 2,850 €</p>

<p>Interested candidates should send their CV, statement of research interests, and contact information of at least 2 references to David Vallenet (vallenet@genoscope.cns.fr).</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26559/microscope</guid>
	<pubDate>Fri, 04 Mar 2016 05:26:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26559/microscope</link>
	<title><![CDATA[Microscope]]></title>
	<description><![CDATA[<p>Microscope Platform user documentation.</p>
<p>The MicroScope platform is available at this URL:</p>
<p><a href="https://www.genoscope.cns.fr/agc/microscope">https://www.genoscope.cns.fr/agc/microscope</a></p><p>Address of the bookmark: <a href="http://microscope.readthedocs.org/en/latest/index.html" rel="nofollow">http://microscope.readthedocs.org/en/latest/index.html</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26500/postdoc-at-iiser-tvm</guid>
  <pubDate>Fri, 26 Feb 2016 03:53:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[PostDoc at IISER -TVM]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship/ Research Associateship</p>

<p>Eligibility : M Phil / Phd</p>

<p>Location : Thiruvananthapuram</p>

<p>Last Date : 30 Apr 2016</p>

<p>Hiring Process : Face to Face Interview<br />IISER -TVM </p>

<p>The Postdoctoral Fellowship/Research Associateship is a full-time, contractual position for highly qualified young scientists to carry out research at CCMS, IISER-TVM.</p>

<p>Research areas at the Centre</p>

<p>Quantum Chemistry/ Computational Fluid Dynamics/Condensed Matter Physics (Theory)/Genomics/Genetics/Gravitational Waves</p>

<p>Qualifications: PhD in Bioinformatics / Biophysics / Physics / Astrophysics / Chemistry / Mathematics / Engineering (Mechanical/Aerospace) Those who are in the final stages of their Ph.D. thesis submission are also eligible to apply. However, those candidates must have submitted the thesis at the time of the interview.</p>

<p>Experience: Applicants should have at least three peer reviewed publications and relevant experience in the research area they are applying for.</p>

<p>No. of positions: 5</p>

<p>Age limit: 35 yrs or below. A relaxation of 5 yrs will be applicable to candidates belonging to SC/ST/OBC and women candidates</p>

<p>Salary: The Fellowship carries a remuneration of INR Rs. 5,18,000 - Rs. 5,76,000 per annum (including HRA). The postdoctoral fellowship may not be held concurrently with any other national or international fellowships. It is also not transferable to any other fellowship<br />How to apply</p>

<p>Applications should reach the Head, CCMS, IISER Thiruvananthapuram,CET Campus, Engineering College PO,Thiruvananthapuram 695016 on or before April 30, 2016 by e-mail to ccms@iisertvm.ac.in by mentioning the research area name in the subject line. </p>

<p>More at http://www.iisertvm.ac.in/openings/read_opening/150.phpx</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26221/project-assistant-at-iiser-mohali</guid>
  <pubDate>Fri, 29 Jan 2016 11:04:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant at IISER Mohali]]></title>
  <description><![CDATA[
<p>Project Assistant Job position in Indian Institute of Science Education &amp; Research (IISER) Mohali </p>

<p>Title : In silico understanding of molecular basis of recognition, binding, and regulation of mRNA by STAR family of transcriptional regulators.</p>

<p>No. of Post : 01</p>

<p>Department : Science and Technology</p>

<p>Qualifications : M.Sc./B.Tech in computational life sciences, computational chemistry, computational natural sciences or allied areas. Working experience in MD simulations, bioinformatics, molecular modeling, and drug designing is desirable and plus</p>

<p>Emoluments : As per DST norms<br />How to apply</p>

<p>Applicants are requested to send application along with bio-data and a summary of previous projects (if any) as a PDF file with the e-mail to Dr. Monika Sharma, Email: mnsharma@iisermohali.ac.in. Last date of applications is 17:00 IST. Feb 15, 2016. Shortlisted candidates will be called for interview on Feb 22, 2016. </p>

<p>More at http://14.139.227.202/tenders/tenderinvite/index.php/iiserm-project-openings/554-applications-are-invited-to-work-as-project-assistant-in-a-dst-inspire-research-project-funded-by-department-of-science-and-technology-india</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26309/ratt</guid>
	<pubDate>Sun, 07 Feb 2016 16:09:40 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26309/ratt</link>
	<title><![CDATA[RATT]]></title>
	<description><![CDATA[<p><strong>RATT</strong> is software to transfer annotation from a reference (annotated) genome to an unannotated query genome.</p>
<p>It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species, like <em>Plasmodium chabaudi</em> onto <em> P. berghei</em>, between different Leishmania species or <em>Salmonella enterica</em> onto other Salmonella serotypes. <strong>RATT</strong> is able to transfer any entries present on a reference sequence, such as the systematic id or an annotator's notes; such information would be lost in a <em>de novo</em> annotation.</p>
<p>More at http://ratt.sourceforge.net/</p><p>Address of the bookmark: <a href="http://ratt.sourceforge.net/" rel="nofollow">http://ratt.sourceforge.net/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26332/pilon</guid>
	<pubDate>Mon, 08 Feb 2016 15:56:18 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26332/pilon</link>
	<title><![CDATA[Pilon]]></title>
	<description><![CDATA[<p>Pilon is a software tool which can be used to:</p>
<ul>
<li>Automatically improve draft assemblies</li>
<li>Find variation among strains, including large event detection</li>
</ul>
<p>Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read alignment analysis to identify inconsistencies between the input genome and the evidence in the reads. It then attempts to make improvements to the input genome, including:</p>
<ul>
<li>Single base differences</li>
<li>Small indels</li>
<li>Larger indel or block substitution events</li>
<li>Gap filling</li>
<li>Identification of local misassemblies, including optional opening of new gaps</li>
</ul>
<p>More at https://github.com/broadinstitute/pilon/wiki</p><p>Address of the bookmark: <a href="https://github.com/broadinstitute/pilon/wiki" rel="nofollow">https://github.com/broadinstitute/pilon/wiki</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26363/flo</guid>
	<pubDate>Wed, 10 Feb 2016 10:52:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26363/flo</link>
	<title><![CDATA[flo]]></title>
	<description><![CDATA[<p>flo - same species annotations lift over pipeline</p>
<p>Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimentally verified) are available on the old assembly.</p>
<p>The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver).</p>
<p>&nbsp;</p>
<p>https://github.com/wurmlab/flo</p><p>Address of the bookmark: <a href="https://github.com/wurmlab/flo" rel="nofollow">https://github.com/wurmlab/flo</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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