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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27323?offset=1190</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/2991/illumina-reveals-first-dataset-of-long-reads</guid>
	<pubDate>Fri, 23 Aug 2013 06:29:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/2991/illumina-reveals-first-dataset-of-long-reads</link>
	<title><![CDATA[Illumina reveals first dataset of long reads]]></title>
	<description><![CDATA[<p>With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., &nbsp;<a href="http://www.illumina.com/services/long-read-sequencing-service.ilmn">FastTrack Long Reads</a>.</p><p>Average read length is around<span>&nbsp;8,500 base pairs in release dataset.</span>&nbsp;Best thing about this, there is not much effect on cost and quality of data.</p><p>You can also check following pages for publications on long reads and more:</p><p><a href="http://www.illumina.com/services/long-read-sequencing-service.ilmn">http://www.illumina.com/services/long-read-sequencing-service.ilmn</a></p><p><a href="http://blog.basespace.illumina.com/2013/07/22/first-data-set-from-fasttrack-long-reads-early-access-service/">http://blog.basespace.illumina.com/2013/07/22/first-data-set-from-fasttrack-long-reads-early-access-service/</a></p><p>&nbsp;</p><p>&nbsp;</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21930/bioinformatics-ra-at-ivri</guid>
  <pubDate>Tue, 07 Apr 2015 03:10:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics RA at IVRI]]></title>
  <description><![CDATA[
<p>A walk in interview is scheduled in the seminar hall of Veterinary Biotechnology Division of the institute on 9.04.15 at 10.30 am for the engagement of one Research associate (RA) in ICAR funded time bound project entitled “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>The engagement is purely temporary on contractual basis and co-terminus with the project. There will be no provision of absorption of absorption/reemployment in IVRI/DBT on termination of the project.</p>

<p>No TA/DA will be provided for appearing in the interview and no separate letter will be issued.</p>

<p>A. Name tile of the project: “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>B. Position/post to be filled: Research Associate (one)</p>

<p>C. Essential/Desirable qualifications:</p>

<p>•Essential: M.V.Sc./M.Tech./MSc Degree in Biotechnology/ Biochemistry/ Microbiology/Immunology/Bioinformatics/Genetics/Life Sciences or</p>

<p>Masters in Computer Application/ Masters in Computer science with first division.</p>

<p>• Desirable: Experience in cell culture, next generation sequencing, C++ and perl programming. NET/GATE qualified will be preferred.</p>

<p>• Experience : At least 2 years</p>

<p>D. Emoluments: Rs. 23000/- per month + 20% HRA</p>

<p>E. Age Limit: Maximum 40 years for men and 45 years for women</p>

<p>F. Duration of the project: Up to March 2017</p>

<p>G. Name of PI/Contact person: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Division of Veterinary Biotechnology.</p>

<p>H. Address for correspondence: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Computational Biology and Genomics facility,Division of Veterinary Biotechnology, I.V.R.I., Izatnagar – 243122</p>

<p>Advertisement: www.ivri.nic.in/jobs/WalkIn_interview_01042015.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</guid>
	<pubDate>Tue, 17 Sep 2013 16:48:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</link>
	<title><![CDATA[Tigers genome sequenced]]></title>
	<description><![CDATA[<p>Fifteen scientists led by Dr Jong Bhak of Genome Research Foundation, South Korea, decoded as many as 3 billion nucleotides (organic molecules that form the basic building blocks of nucleic acids, such as DNA). They identified 20,000 genes related to various functions of the tiger.&nbsp;</p><p>The biggest and perhaps most fearsome of the world's big cats, the tiger, shares 95.6 percent of its DNA with humans' cute and furry companions, domestic cats.</p><p>The new research showed that big cats have genetic mutations that enabled them to be carnivores. The team also identified mutations that allow snow leopards to thrive at high altitudes.</p><p>Reference:</p><p><a href="http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690">http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690</a></p><p><a href="http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms">http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms</a></p><p>Paper:</p><p><a href="http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html">http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22066/jrf-bioinformatics-national-institute-of-immunology-new-delhi-110067</guid>
  <pubDate>Fri, 17 Apr 2015 02:39:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ NATIONAL INSTITUTE OF IMMUNOLOGY  NEW DELHI-110067]]></title>
  <description><![CDATA[
<p>Applications are invited for the position of Junior Research Fellow (Project)/Senior Research Fellow (Project) for the following time-bound sponsored project as per the details given below:</p>

<p>1. “Development of bioinformatics methods for identifying novel secondary metabolites by genome mining” funded by DBT</p>

<p>JRF (P)/SRF (P) (One Position only)</p>

<p>Dr. Debasisa Mohanty Staff Scientist-VI deb@nii.res.in</p>

<p>Educational Qualifications: JRF (Project): M.Sc (Bioinformatics/ Biophysics/Biotechnology or any other stream of biological/physical sciences) or M.Tech. (Bioinformatics/Biotechnology/Computational Sciences) of M. Pharm.</p>

<p>SRF (Project): M.Sc (Bioinformatics/Biophysics/Biotechnology or any other stream of biological/physical sciences) or M.Tech. (Bioinformatics/Biotechnology/Computational Sciences) of M. Pharm with atleast 03 years of research experience.</p>

<p>Desirable Qualifications: Strong computer programming skills (in PERL/CGI/PHP or C++ or object oriented database management systems like MySQL etc or scripting languages under LINUX/UNIX environment) and sufficient experience in computational analysis of biological/biochemical data.</p>

<p>The candidates must highlight their experience in programming and database development in their CV. Job description: Computational analysis of genomes and development of bioinformatics tools and software’s for sequence and structure based analysis of biosynthetic pathways.</p>

<p>Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications &amp; experience JRF (Project): Rs. 12,000/- per month plus 30% HRA SRF (Project): Rs. 14,000/- per month plus 30% HRA (*Candidates possessing qualifications as per latest DST OM, will be given revised scales). </p>

<p>More at http://www1.nii.res.in/sites/default/files/projectappointments-Dr.DebasisaMohanty-30April2015.pdf</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5817/the-first-50-plant-genomes</guid>
	<pubDate>Mon, 21 Oct 2013 11:19:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5817/the-first-50-plant-genomes</link>
	<title><![CDATA[The First 50 Plant Genomes]]></title>
	<description><![CDATA[<p>Plant scientists can exploit available 50 plant complete genomic data for their resequencing or other related projects for understanding the genetic mechanism behind their different traits and molecular evolution. Complete information about these plant genomes given in paper link.</p>
<p><a href="https://www.crops.org/publications/tpg/articles/6/2/plantgenome2013.03.0001in">https://www.crops.org/publications/tpg/articles/6/2/plantgenome2013.03.0001in</a></p><p>Address of the bookmark: <a href="https://www.crops.org/publications/tpg/pdfs/6/2/plantgenome2013.03.0001in" rel="nofollow">https://www.crops.org/publications/tpg/pdfs/6/2/plantgenome2013.03.0001in</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22026/igib-recruitment-2015-%E2%80%93-project-scientist</guid>
  <pubDate>Tue, 14 Apr 2015 12:19:59 -0500</pubDate>
  <link></link>
  <title><![CDATA[IGIB Recruitment 2015 – Project Scientist]]></title>
  <description><![CDATA[
<p>IGIB Recruitment 2015 – Project Scientist &amp; SPF Posts: CSIR – Institute of Genomics &amp; Integrative Biology (IGIB) has issued notification for the recruitment of Project Scientist, Sr Project Fellow vacancies on temporary basis for project entitled “Setting up of CSIR(unit)-TRISUTRA (Translational research and Innovative Science through Ayurgenomics)”. Eligible candidates may apply in prescribed application format on or before 23-04-2015. Other details like age limit, educational qualification, selection process &amp; how to apply are given below…</p>

<p>IGIB Vacancy Details:<br />Total No. of Posts: 04<br />Name of the Posts:<br />1. Project Scientist (Biology): 02 Posts<br />2. Project Scientist (Bioinformatics): 01 Post<br />3. Sr Project Fellow (Ayurveda): 01 Post</p>

<p>Age Limit: Candidates age should be 35 years for post 1, 32 years for post 2</p>

<p>Educational Qualification: Candidates should have Ph.D/ Ph.D submitted in any branch of Biological Science/ Life Science for post 1, Ph.D/ Ph.D submitted in Bioinformatics for post 2, BAMS degree with one year internship for post 3.</p>

<p>Selection Process: Candidates will be selected based on their performance in interview.</p>

<p>How to Apply: Eligible candidates may send their application along with all relevant documents on or before 23-04-2015.</p>

<p>Important Dates:<br />Last Date for Receipt of Application for Post 1 &amp; 2: 23-04-2015.<br />Date of Interview for Post 3: 27-04-2015.</p>

<p>For other details like pay scale, age relaxation, educational qualification, selection process, how to apply, etc., click on the link given below…</p>

<p>http://www.freejobalert.com/wp-content/uploads/2015/03/Notification-IGIB-Project-Scientist-SPF-Posts.pdf</p>

<p>http://www.igib.res.in/sites/default/files/27042015.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</guid>
	<pubDate>Wed, 05 Jul 2017 16:47:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</link>
	<title><![CDATA[GeneProf: analysis of high-throughput sequencing experiment]]></title>
	<description><![CDATA[<div>GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data!</div>
<p>Some of GeneProf's highlights include:</p>
<ul>
<li><strong>Easy-to-use web-based interface:</strong>Access your data at any time from any computer with a working internet connection -- no need to install software! (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_introduction.jsp#section:SystemRequirements">Section 'System Requirements'</a>).</li>
<li><strong>Analysis wizards make your life easy:</strong>Step-by-step workflows make it easy to analyse high-throughput data within a minimum of hands-on time. (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#subconcept:AnalysisWizards">SubConcept 'Analysis Wizards'</a>).</li>
<li><strong>Versatile modules:</strong>Advanced users and data analysis experts benefit from GeneProf's broad range of analysis modules, which can be combined freely into sophisticated workflows (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#concept:Workflows">Concept 'Workflows'</a>).</li>
<li><strong>Integrated Analysis:</strong>Analysis of&nbsp;<em>ChIP-seq</em>&nbsp;and&nbsp;<em>RNA-seq</em>&nbsp;data in one place, plus support for the integration of other external data (e.g. from microarrays).</li>
<li><strong>Comprehensive Resource:</strong>GeneProf provides a comprehensive resource of&nbsp;<em>fully analyzed</em>&nbsp;next-generation sequencing data. Experimental results can be easily accessed and compared and the analysis procedures employed to produce the data are fully transparent (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_tutorials.jsp#tutorial:ExaminingPublicNext-GenDatausingGeneProf">Tutorial 'Examining Public Next-Gen Data..'</a>).</li>
<li><strong>Extensibility:</strong>Algorithm developers and computer programmers can develop their own modules and extend GeneProf. Existing software can be easily wrapped in the workflow framework (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:ModuleDevelopment:AddingnewFunctionalitytoGeneProf">Section 'Module Development: Adding new..'</a>) and data from GeneProf may be used externally (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:WebAPI:RetrievingDatafromGeneProf">Section 'Web API: Retrieving Data from ..'</a>).</li>
</ul>
<p>&nbsp;</p>
<p>GeneProf is academic software developed at the&nbsp;<a href="http://www.crm.ed.ac.uk/">Centre for Regenerative Medicine</a>&nbsp;/&nbsp;<a href="http://www.crm.ed.ac.uk/about/institute-stem-cell-research">Institute for Stem Cell Research</a>,&nbsp;<a href="http://www.ed.ac.uk/">University of Edinburgh</a>&nbsp;and has benefited from funding by the&nbsp;<a href="http://www.mrc.ac.uk/">Medical Research Council</a>&nbsp;and the&nbsp;<a href="http://www.eurosystemproject.eu/">EU Framework 7 Project "EuroSyStem"</a>.</p><p>Address of the bookmark: <a href="https://www.geneprof.org/GeneProf/index.jsp" rel="nofollow">https://www.geneprof.org/GeneProf/index.jsp</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/22047/binc-sample-question-paper</guid>
	<pubDate>Thu, 16 Apr 2015 09:14:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/22047/binc-sample-question-paper</link>
	<title><![CDATA[BINC Sample Question Paper !!!]]></title>
	<description><![CDATA[<p>BINC sample question paper round TWO.</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/22047" length="1621" type="text/plain" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34748/airvf-a-filtering-toolbox-for-precise-variant-calling-in-ion-torrent-sequencing</guid>
	<pubDate>Fri, 22 Dec 2017 00:31:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34748/airvf-a-filtering-toolbox-for-precise-variant-calling-in-ion-torrent-sequencing</link>
	<title><![CDATA[AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing]]></title>
	<description><![CDATA[<p><span>AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to &sim;98% reduction of false variants when combined to conventional public pipelines and &sim;48% to the in-house commercial solution, with a minimal loss of sensitivity</span></p>
<p><span><span>The program with a detailed manual is available at&nbsp;</span><a href="https://sourceforge.net/projects/airvf/" target="">https://sourceforge.net/projects/airvf/</a></span></p><p>Address of the bookmark: <a href="https://sourceforge.net/projects/airvf/" rel="nofollow">https://sourceforge.net/projects/airvf/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22072/bioinformatics-jrfrasrf-position-at-indian-institute-of-science-education-and-research-iiser-kolkata-kolkata-west-bengal</guid>
  <pubDate>Fri, 17 Apr 2015 04:11:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/RA/SRF position at Indian Institute of Science Education and Research (IISER Kolkata) - Kolkata, West Bengal]]></title>
  <description><![CDATA[
<p>Research Position in Computational Biology in the group of Shree P. Pandey Positions available in the area of NGS data analysis, bioinformatics, plant genomics</p>

<p>Project Description: Projects involves high throughput analysis of data mostly generated by massively parallel sequencing (RNA-Seq and small-RNA-Seq), microarrays and related platforms. We are looking for highly motivated and bright individuals interested in high-throughput cutting-edge data analyses methods in genomics (computational positions). Available positions: Applications are invited from suitable candidates in both, the Max Planck India Partner Program and the CRP Wheat Program for openings at the levels:</p>

<p>Post Name-Qualification-Salary:<br />Project assistant – Master’s – Rs. 14000<br />Project fellow (junior data analyst) – Masters + research experience – Rs. 16000<br />Research fellow (senior data analyst) – Masters + adequate research experience/desirable skill sets – Rs. 22000<br />Research Associated – PhD (&lt; 1yr) /&gt; 1 yr experience – Rs. 28000 / Rs. 32000<br />Essential qualification: MSc/MTech/PhD (or other suitable qualification) in discipline related to bioinformatics, computational biology, computer application (or equivalent)/ ‘Advance Post-Graduate Diploma in Bioinformatics’. Proficiency in one of the programming languages or statistics (proficient in R for example) is compulsory.<br />Desirable qualification: 1. Programming experiences in at least one low level language such as C/C++ and one scripting language such as Perl/Python/PHP and knowledge of SQL/MySQL. 2. Substantial experience in the linux or other unix environments. 3. Experience of working in projects on Bioinformatics, Genetics or Biological application areas/Computational and Statistical analysis (e.g. using R or Matlab). Experience in the field of genomics (NGS, microarrays, genome annotation), database development and management, software development, systems and network biology (or related fields) will be preferred.<br />SELECTION PROCEDURE FOR INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH (IISER KOLKATA) – RESEARCH ASSOCIATE &amp; MORE VACANCIES POST:</p>

<p>Candidates can apply on or before 30/04/2015<br />No Detailed information about the selection process is mentioned in the recruitment notification<br />HOW TO APPLY FOR RESEARCH ASSOCIATE &amp; MORE VACANCIES IN INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH (IISER KOLKATA):</p>

<p>Applications should contain CV along with brief description (maximum 1 page) of research conducted (highlighting skills and experience) till now. Applications should be sent by email to Shree P. Pandey, Department of Biological Sciences, IISER-Kolkata, Mohanpur Campus, West Bengal within 2 weeks. Interviews will be scheduled within 10 days of closing of applications. E-mail: sppiiserkol@gmail.com, sppandey@iiserkol.ac.in<br />For more details visit: http://www.iiserkol.ac.in/~sppandey</p>
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